FC878129

Overview
NameFC878129
Unique NameFC878129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13022 contig Ccv1_Contig13022:372..1162. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_MYCTU (GTP-binding protein engA OS=Mycobacterium tuberculosis GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGG 720
            P VA+VGRPNVGKS L NR++G   A+V D PGVTRDR+   + W    F++ DTGG
Sbjct:   27 PVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGG 83          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_MYCTA (GTP-binding protein engA OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGG 720
            P VA+VGRPNVGKS L NR++G   A+V D PGVTRDR+   + W    F++ DTGG
Sbjct:   27 PVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGG 83          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_MYCMM (GTP-binding protein engA OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGG 720
            P +AIVGRPNVGKS L NR++G   A+V D PGVTRDR+   + W    F++ DTGG
Sbjct:   30 PVLAIVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVSYDALWNGRRFVVQDTGG 86          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_MYCBT (GTP-binding protein engA OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGG 720
            P VA+VGRPNVGKS L NR++G   A+V D PGVTRDR+   + W    F++ DTGG
Sbjct:   27 PVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGG 83          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_MYCBP (GTP-binding protein engA OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGG 720
            P VA+VGRPNVGKS L NR++G   A+V D PGVTRDR+   + W    F++ DTGG
Sbjct:   27 PVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGG 83          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_MYCBO (GTP-binding protein engA OS=Mycobacterium bovis GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 32/57 (56.14%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  550 PRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGG 720
            P VA+VGRPNVGKS L NR++G   A+V D PGVTRDR+   + W    F++ DTGG
Sbjct:   27 PVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGG 83          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_DESVV (GTP-binding protein engA OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG-RSFWGEHEFMLVDTGGV 723
            +  ++A+VGRPNVGKS LFNRL+  NRAI  D PGVTRDRM G      +  F ++DTGG+
Sbjct:    1 MFAKIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGI 61          
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_DESVH (GTP-binding protein engA OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=engA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.909e-11
Identity = 34/61 (55.74%), Postives = 43/61 (70.49%), Query Frame = 1
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYG-RSFWGEHEFMLVDTGGV 723
            +  ++A+VGRPNVGKS LFNRL+  NRAI  D PGVTRDRM G      +  F ++DTGG+
Sbjct:    1 MFAKIALVGRPNVGKSTLFNRLIRSNRAITHDMPGVTRDRMEGIVRGRNKRPFGIIDTGGI 61          
The following BLAST results are available for this feature:
BLAST of FC878129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
ENGA_MYCTU7.909e-1156.14GTP-binding protein engA OS=Mycobacterium tubercul... [more]
ENGA_MYCTA7.909e-1156.14GTP-binding protein engA OS=Mycobacterium tubercul... [more]
ENGA_MYCMM7.909e-1156.14GTP-binding protein engA OS=Mycobacterium marinum ... [more]
ENGA_MYCBT7.909e-1156.14GTP-binding protein engA OS=Mycobacterium bovis (s... [more]
ENGA_MYCBP7.909e-1156.14GTP-binding protein engA OS=Mycobacterium bovis (s... [more]
ENGA_MYCBO7.909e-1156.14GTP-binding protein engA OS=Mycobacterium bovis GN... [more]
ENGA_DESVV7.909e-1155.74GTP-binding protein engA OS=Desulfovibrio vulgaris... [more]
ENGA_DESVH7.909e-1155.74GTP-binding protein engA OS=Desulfovibrio vulgaris... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA64AE06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878129 ID=FC878129; Name=FC878129; organism=Citrus clementina; type=EST; length=791bp
CCAAAAATCTTCAATTTCCATTTTCCATTTCCGTTTCTGAAAACACTCGC
AAAAACAAAAATGCCATCTGCAGCTGCAGCTCACACGCTTTCTTCTTCAA
TTTCTCTCATCTCTGCAATTCCGAAACTGCCCTTCTCGTCTTCCTTCTCC
TCTTCATTTCCAATCCTTCGCTCATTCTCTCCTCAATTACTCTCCCTTTC
TCTCCACAAACACTATCCTCTCCCTCTCCCTCTCACTCGCCACCTCCGGT
CTCTATCTCCCTCCAACGACGCCGTTTCGTCCTCAAACGACGACGCCTTC
GAAGATTCGCCGTTTGAGGACGAGGACGACGACGCCGAGTATGAAGACGT
CGATGATGAGTCTGACGGTCAGGATTTCGGCATTGACGTCGACGCGCTTG
AGCGAGAAGCCAAAGACGCTGTTCGCGAGTACTCTTCTTTGTTATCTCGC
CAACTAATAATACAAGATGAGACGGATGATCGAAAGGATTCTGGCAAAAA
GCAGAAAAAGCGTAAAACTACTATAGGAAATGTCCCTGAACATCTTCTGC
CAAGAGTTGCTATTGTTGGAAGGCCGAATGTTGGTAAATCAGCACTATTT
AACCGTCTTGTTGGGGGTAACAGGGCTATTGTGGTGGATGAACCTGGGGT
TACTAGGGATCGAATGTATGGCAGATCATTTTGGGGAGAGCATGAATTTA
TGCTGGTGGATACTGGTGGTGTGCTAAATGTTTCAAAGTCCCAGCCTAAT
ATTATGGAAGATTTGGCTATCACAACGACTATTGGAATGGA
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