FC878129

Overview
NameFC878129
Unique NameFC878129
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13022 contig Ccv1_Contig13022:372..1162. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHESR (GTP-binding protein engA OS=Shewanella sp. (strain MR-7) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHESM (GTP-binding protein engA OS=Shewanella sp. (strain MR-4) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHESH (GTP-binding protein engA OS=Shewanella sediminis (strain HAW-EB3) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHESA (GTP-binding protein engA OS=Shewanella sp. (strain ANA-3) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHEPC (GTP-binding protein engA OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHEON (GTP-binding protein engA OS=Shewanella oneidensis GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHEFN (GTP-binding protein engA OS=Shewanella frigidimarina (strain NCIMB 400) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLAGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHEDO (GTP-binding protein engA OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHEB9 (GTP-binding protein engA OS=Shewanella baltica (strain OS195) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
[Close]
BLAST of FC878129 vs. ExPASy Swiss-Prot
Match: ENGA_SHEB8 (GTP-binding protein engA OS=Shewanella baltica (strain OS185) GN=engA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.179e-14
Identity = 37/60 (61.67%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:  544 LLPRVAIVGRPNVGKSALFNRLVGGNRAIVVDEPGVTRDRMYGRSFWGEHEFMLVDTGGV 723
            ++P VA+VGRPNVGKS LFNRL     A+V D PG+TRDR YGR+F   +EF++VDTGG+
Sbjct:    1 MIPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGRAFLSGYEFIVVDTGGI 60
The following BLAST results are available for this feature:
BLAST of FC878129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 478
Match NameE-valueIdentityDescription
ENGA_SHESR1.179e-1461.67GTP-binding protein engA OS=Shewanella sp. (strain... [more]
ENGA_SHESM1.179e-1461.67GTP-binding protein engA OS=Shewanella sp. (strain... [more]
ENGA_SHESH1.179e-1461.67GTP-binding protein engA OS=Shewanella sediminis (... [more]
ENGA_SHESA1.179e-1461.67GTP-binding protein engA OS=Shewanella sp. (strain... [more]
ENGA_SHEPC1.179e-1461.67GTP-binding protein engA OS=Shewanella putrefacien... [more]
ENGA_SHEON1.179e-1461.67GTP-binding protein engA OS=Shewanella oneidensis ... [more]
ENGA_SHEFN1.179e-1461.67GTP-binding protein engA OS=Shewanella frigidimari... [more]
ENGA_SHEDO1.179e-1461.67GTP-binding protein engA OS=Shewanella denitrifica... [more]
ENGA_SHEB91.179e-1461.67GTP-binding protein engA OS=Shewanella baltica (st... [more]
ENGA_SHEB81.179e-1461.67GTP-binding protein engA OS=Shewanella baltica (st... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA64AE06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878129 ID=FC878129; Name=FC878129; organism=Citrus clementina; type=EST; length=791bp
CCAAAAATCTTCAATTTCCATTTTCCATTTCCGTTTCTGAAAACACTCGC
AAAAACAAAAATGCCATCTGCAGCTGCAGCTCACACGCTTTCTTCTTCAA
TTTCTCTCATCTCTGCAATTCCGAAACTGCCCTTCTCGTCTTCCTTCTCC
TCTTCATTTCCAATCCTTCGCTCATTCTCTCCTCAATTACTCTCCCTTTC
TCTCCACAAACACTATCCTCTCCCTCTCCCTCTCACTCGCCACCTCCGGT
CTCTATCTCCCTCCAACGACGCCGTTTCGTCCTCAAACGACGACGCCTTC
GAAGATTCGCCGTTTGAGGACGAGGACGACGACGCCGAGTATGAAGACGT
CGATGATGAGTCTGACGGTCAGGATTTCGGCATTGACGTCGACGCGCTTG
AGCGAGAAGCCAAAGACGCTGTTCGCGAGTACTCTTCTTTGTTATCTCGC
CAACTAATAATACAAGATGAGACGGATGATCGAAAGGATTCTGGCAAAAA
GCAGAAAAAGCGTAAAACTACTATAGGAAATGTCCCTGAACATCTTCTGC
CAAGAGTTGCTATTGTTGGAAGGCCGAATGTTGGTAAATCAGCACTATTT
AACCGTCTTGTTGGGGGTAACAGGGCTATTGTGGTGGATGAACCTGGGGT
TACTAGGGATCGAATGTATGGCAGATCATTTTGGGGAGAGCATGAATTTA
TGCTGGTGGATACTGGTGGTGTGCTAAATGTTTCAAAGTCCCAGCCTAAT
ATTATGGAAGATTTGGCTATCACAACGACTATTGGAATGGA
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