FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NITEU (Ornithine carbamoyltransferase OS=Nitrosomonas europaea GN=argF PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 5.660e-36
Identity = 82/182 (45.05%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL   DFD+     + DR   +K   K   R + P   +T++MIF K S RTR+SFE G   LGG AIYL   D Q+G+ E   DAARV+ R  DII  R   H  I   A+ + VPVINGLTD  HPCQI+AD  T +EH G + G  V ++GD NNV ++WL  A V  F+   + P G+
Sbjct:    6 FLQFKDFDRQEYEYLFDRTRWIKNEFKQY-RRYWPLTDRTLAMIFEKHSTRTRLSFEAGMHQLGGSAIYLSTRDTQLGRGEPVEDAARVISRMVDIITLRTHEHGVIERFAENSRVPVINGLTDEYHPCQILADIFTFMEHRGSIAGKTVAWIGDSNNVCNTWLQAAEVFDFNVHVSTPPGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHOS4 (Ornithine carbamoyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=argF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.392e-36
Identity = 83/183 (45.36%), Postives = 109/183 (59.56%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFL----PFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            FL I   D A + +++D A  +KA  K   +  L    P  G+ +++IF KPS RTRVSF+ G   +GG  + L   ++Q+G  E   D ARVL RY D+IM R F    +L++A+ ATVPVINGLT+  HPCQIMAD +T  EH G + G KVV+ GDGNNV  S+L  A    F F    P
Sbjct:    4 FLDIHKTDTAELRQMMDSAHAMKAARKGRPKGQLDEDQPLAGRMVALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGKEMQLGHGETIADTARVLSRYVDLIMIRTFEEATLLEMAEHATVPVINGLTNRTHPCQIMADVMTYEEHRGPIAGRKVVWAGDGNNVCASFLHAAGQFGFDFTFTGP 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHOS1 (Ornithine carbamoyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=argF PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.392e-36
Identity = 83/183 (45.36%), Postives = 109/183 (59.56%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFL----PFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            FL I   D A + +++D A  +KA  K   +  L    P  G+ +++IF KPS RTRVSF+ G   +GG  + L   ++Q+G  E   D ARVL RY D+IM R F    +L++A+ ATVPVINGLT+  HPCQIMAD +T  EH G + G KVV+ GDGNNV  S+L  A    F F    P
Sbjct:    4 FLDIHKTDTAELRQMMDSAHAMKAARKGRPKGQLDEDQPLAGRMVALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGKEMQLGHGETIADTARVLSRYVDLIMIRTFEEATLLEMAEHATVPVINGLTNRTHPCQIMADVMTYEEHRGPIAGRKVVWAGDGNNVCASFLHAAGQFGFDFTFTGP 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_GLOVI (Ornithine carbamoyltransferase OS=Gloeobacter violaceus GN=argF PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.392e-36
Identity = 82/183 (44.81%), Postives = 108/183 (59.02%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + D D+A +  +L  A +    LK G+R      GK + ++F K S RTRVSF      LGG  I L P + Q+G+ E  RD ARVL RY D +  R F   ++ + A +A +PVIN LTD+ HPCQ++AD LTI E+ GRL G K+ YVGDGNNV HS LL  + +      A P+GF
Sbjct:   13 DLLSLDDLDEAQLHALLTLAHQ----LKRGER-VANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGF 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHOPA (Ornithine carbamoyltransferase OS=Rhodopseudomonas palustris GN=argF PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 79/179 (44.13%), Postives = 109/179 (60.89%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            FL +++   + +  +L  A  +KA  K+      P  GKT++MIF KPS RTRVSF+ G   LGG +I L   ++Q+G+ E   D ARVL R+ DIIM R+  H+ +L+LA  ATVPVINGLT  +HPCQ+MAD +T  EH G ++G  + + GD NNV+ S+   A    F    A P
Sbjct:   10 FLDLTELPTSELRNMLSAAVAMKAKRKANADGEKPLAGKTLAMIFDKPSTRTRVSFDVGMRQLGGESIMLTGAEMQLGRGETIADTARVLSRFVDIIMIRILNHEALLELAANATVPVINGLTRKSHPCQVMADVMTFEEHRGPIKGRTIAWTGDDNNVLASFAHAAQRFEFKLNIATP 188          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_HERAR (Ornithine carbamoyltransferase OS=Herminiimonas arsenicoxydans GN=argF PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.654e-36
Identity = 79/182 (43.41%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL  SD        +++R   +K   K+ +    P   +T+ M+F K S RTR+SFE G   LGG AI+L   D Q+G+ E   DAA+V+ R  DIIM R FG   I   A  + VPVINGLT+ +HPCQ++AD  T IEH G ++G  V ++GD NN+++SWL  A V  FH   + PKG+
Sbjct:    6 FLQFSDLTLDEFEYVIERTRIIKRKFKNYEPHH-PLVDRTLVMVFEKNSTRTRLSFEAGMHQLGGAAIHLATRDSQLGRGEPVEDAAQVMSRMCDIIMIRTFGQDIIERFAANSRVPVINGLTNEHHPCQVLADVFTFIEHRGSIKGKTVAWIGDANNMLYSWLQAAQVFDFHVNVSTPKGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHIL3 (Ornithine carbamoyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=argF PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.261e-35
Identity = 81/181 (44.75%), Postives = 108/181 (59.67%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            FL +S    A +  I++ A   K   K+G     P  GK ++MIF KPS RTRVSF+ G   LGG  ++L   ++Q+G+ E   D A+VL RY D IM R   H  +L+LA+ ATVPVIN LTD  HPCQIMAD +T  EH G ++G  + + GDGNNV+HS +  A+   +    A P G
Sbjct:    6 FLDLSAVTSADLRTIMNDALARKQAFKAGTGD-KPLAGKMLAMIFEKPSTRTRVSFDVGMRQLGGETLFLSGTEMQLGRAETIGDTAKVLSRYVDAIMIRTTEHSRLLELAQHATVPVINALTDDTHPCQIMADIMTFEEHRGPIKGKTIAWTGDGNNVLHSLVEGAARFGYRMNMAVPLG 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METLZ (Ornithine carbamoyltransferase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=argF PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.647e-35
Identity = 84/184 (45.65%), Postives = 113/184 (61.41%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASV-IPFHFVCACPKGF 807
            DFL I+D        IL  AA +K    +G    L   GKT++MIF K S RTR+SF+ G   LGG+A+YL   D Q+G+ E   D ARV+ RY    + R + H+ I + AK+A++PVIN L+D  HPCQIMAD+LT+ E  G L+G K+ ++GDGNNV +S L+MASV          PKG+
Sbjct:    4 DFLSITDLSAEEYEDILTLAARLKRQRYAGVPHPL-LAGKTLAMIFEKASTRTRMSFDVGMYDLGGYALYLNAKDTQLGRGETVADTARVMSRYVHGAIMRTYKHETITEFAKYASIPVINALSDKEHPCQIMADSLTLKEKFGELDGLKIAWIGDGNNVCNS-LIMASVQTGMEIAVGTPKGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHOSK (Ornithine carbamoyltransferase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=arcB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.151e-35
Identity = 82/183 (44.81%), Postives = 108/183 (59.02%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFL----PFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACP 798
            FL I   D A + +++D A  +KA  K   +       P  G+ +++IF KPS RTRVSF+ G   +GG  + L   ++Q+G  E   D ARVL RY D+IM R F    +L++A+ ATVPVINGLT+  HPCQIMAD +T  EH G + G KVV+ GDGNNV  S+L  A    F F    P
Sbjct:    4 FLDIHKTDTAELRQMMDSAHAMKAARKGRPKGQFDEDQPLAGRMVALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGKEMQLGHGETIADTARVLSRYVDLIMIRTFEEATLLEMAEHATVPVINGLTNRTHPCQIMADVMTYEEHRGPIAGRKVVWAGDGNNVCASFLHAAGQFGFDFTFTGP 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NITOC (Ornithine carbamoyltransferase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=argF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.151e-35
Identity = 76/182 (41.76%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D     I +++ RA ++KAL + G + + P K + + M+F K S RTRVSFE G   LGG+A++L P D Q+G+ E   D ARVL R  D +M R F H  +   + ++ VPVIN LTD  HPCQ++AD  T  EH G ++G  V ++GDGNN+  S++  A    F    A P G+
Sbjct:    6 FLTLFDLPADEIRQLVRRAIDLKALQRQG-KIYEPLKNQVLGMLFEKSSTRTRVSFEVGMIQLGGNAVFLSPRDTQLGRGEPLEDTARVLSRMVDCLMVRTFSHSMLEHFSAYSQVPVINALTDSYHPCQLLADIQTYFEHRGDIQGRTVAWIGDGNNMCQSYINAACQFDFQLHIATPAGY 186          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_NITEU5.660e-3645.05Ornithine carbamoyltransferase OS=Nitrosomonas eur... [more]
OTC_RHOS47.392e-3645.36Ornithine carbamoyltransferase OS=Rhodobacter spha... [more]
OTC_RHOS17.392e-3645.36Ornithine carbamoyltransferase OS=Rhodobacter spha... [more]
OTC_GLOVI7.392e-3644.81Ornithine carbamoyltransferase OS=Gloeobacter viol... [more]
OTC_RHOPA9.654e-3644.13Ornithine carbamoyltransferase OS=Rhodopseudomonas... [more]
OTC_HERAR9.654e-3643.41Ornithine carbamoyltransferase OS=Herminiimonas ar... [more]
OTC_RHIL31.261e-3544.75Ornithine carbamoyltransferase OS=Rhizobium legumi... [more]
OTC_METLZ1.647e-3545.65Ornithine carbamoyltransferase OS=Methanocorpuscul... [more]
OTC_RHOSK2.151e-3544.81Ornithine carbamoyltransferase OS=Rhodobacter spha... [more]
OTC_NITOC2.151e-3541.76Ornithine carbamoyltransferase OS=Nitrosococcus oc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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