FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METCA (Ornithine carbamoyltransferase OS=Methylococcus capsulatus GN=argF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.151e-35
Identity = 75/182 (41.21%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            F+ + D   A    ++ RA ++KA  +     + P K K + M+F K S RTRVSFE G +  GG +I+L P D Q+G+ E   D+ARVL R  D IM R   H+ +   A+++ VPVINGLTD  HPCQ++AD  T  EH G + G  V ++GDGNN+  +++  A ++ F    ACP G+
Sbjct:    6 FVTLRDLSSAEFRALIARAIDLKARKEP----YEPLKNKVLGMVFEKSSTRTRVSFEVGMAQFGGSSIFLSPRDTQLGRGEPIEDSARVLSRMVDCIMLRTHAHRTVEIFAEYSRVPVINGLTDRFHPCQLLADMQTYFEHRGDIAGKTVAWIGDGNNMCQTYVHAAGLLDFRLRIACPPGY 183          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CHRVO (Ornithine carbamoyltransferase OS=Chromobacterium violaceum GN=argF PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.151e-35
Identity = 80/182 (43.96%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +L  SD        + +R+  +K    +G+    P  GK MSM+F K S RTRVSFE G + LGGHA++L     Q+G+ E   D ARVL R +DIIM R F    +  LA  + VPVINGLT+  HPCQ++AD  T +E  G ++G  V +VGDGNNV  +WL  A+V+ F    A P G+
Sbjct:    7 YLQFSDLSPDEYHHLFERSRVLKRRQSAGELH-RPLVGKVMSMVFEKNSTRTRVSFEAGMAQLGGHAMFLDTKSSQIGRGEPIEDTARVLSRMSDIIMIRTFEQGLVQRLAAHSRVPVINGLTNEYHPCQVLADIFTYVERHGSIKGKTVAWVGDGNNVCRTWLQAAAVLGFKLKVASPLGY 187          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PSEAE (Ornithine carbamoyltransferase OS=Pseudomonas aeruginosa GN=argF PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.809e-35
Identity = 75/182 (41.21%), Postives = 109/182 (59.89%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL   D+    ++ ++ R +E+K L   G   + P K + + M+F K S RTR+SFE G   LGG AI+L P D Q+G+ E   D+ARV+ R  D +M R F H  + + A  + VPVINGL+D  HPCQ++AD  T  EH G ++G  V ++GDGNN+ +S++  A    F    ACP+G+
Sbjct:    6 FLSFMDYSPEELIGLIRRGSELKDLRNRGVL-YEPLKSRVLGMVFEKASTRTRLSFEAGMIQLGGQAIFLSPRDTQLGRGEPIGDSARVMSRMLDGVMIRTFAHATLTEFAAHSKVPVINGLSDDLHPCQLLADMQTFHEHRGSIQGKTVAWIGDGNNMCNSYIEAALKFDFQLRVACPEGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METFK (Ornithine carbamoyltransferase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=argF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.809e-35
Identity = 78/182 (42.86%), Postives = 109/182 (59.89%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL  +D +   +  I +R   +K   K+  + + P   +T+ MIF K S RTR+SFE G   LGG AIYL   D Q+G+ E   DAA+V+ R +DI+M R F  + I   A  + VPVINGLT+  HPCQI+AD  T IEH G ++G  V ++GD NNV ++WL  A V+ F+   + P G+
Sbjct:    6 FLQFNDLNADELAHIFERTRWIKEQFKAYQQ-YWPLTDRTLVMIFEKASTRTRLSFEAGMQQLGGSAIYLNTRDSQLGRGEPVEDAAQVISRMSDIVMIRTFEQEIIERFAANSRVPVINGLTNEYHPCQILADIFTYIEHRGSIKGKTVAWIGDSNNVCNTWLQAAEVLDFNVHVSTPPGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_ARCFU (Ornithine carbamoyltransferase OS=Archaeoglobus fulgidus GN=argF PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.809e-35
Identity = 78/181 (43.09%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            L ++D +K  + +IL  A ++K     G  +    K K+++MIF  PS RTRVSFE   + LGGHA+YLG D++Q+G+ E  +D ARVL RY   +M RV  H  I + A+++TVPVINGL++  HPCQ++AD LTI E+ G  +   + +VGDGNNV +S +L A++     V + P+ +
Sbjct:    5 LSMADLEKDELFEILKLAEKLKEERYKGVVTDY-LKNKSLAMIFELPSTRTRVSFEVAMTDLGGHALYLGWDELQLGRGEPIKDTARVLSRYVHAVMMRVREHSTIEEFARYSTVPVINGLSNLEHPCQVIADLLTIYEYRGDFKDVTLAWVGDGNNVCNSMILAAALTGMKMVISTPENY 184          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SILPO (Ornithine carbamoyltransferase OS=Silicibacter pomeroyi GN=argF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 82/186 (44.09%), Postives = 109/186 (58.60%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALL----KSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL I   D A +  ++D+A  +K       K+      P K + +++IF KPS RTRVSF+ G   +GG  + L  +D+Q+G  E   D ARVL RY D+IM R F    + ++A++A VPVINGLTD +HPCQIMAD LT  EH G + G KVV+ GDGNNV  S+L  A    F    + P  F
Sbjct:    4 FLDIHKTDAADLRAMIDQAGAMKQARLGRPKAAPDDEQPLKDRMVALIFEKPSTRTRVSFDVGVRQMGGQTMVLSGNDMQLGHGETIADTARVLSRYVDMIMIRTFDESVLAEMAEYADVPVINGLTDRSHPCQIMADVLTYEEHRGPIAGKKVVWTGDGNNVCSSFLHAAGQFGFDLTFSGPAQF 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PSEPK (Ornithine carbamoyltransferase OS=Pseudomonas putida (strain KT2440) GN=argF PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 76/182 (41.76%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + DF    ++ ++    E+K L K G   F P K + + MIF K S RTRVSFE G   LGG AI+L P D Q+G+ E   D+A VL    D++M R   H  + + A  + VPVINGL+D +HPCQ++AD  T +EH G ++G  V ++GDG N+ +S++  A    F    ACP+G+
Sbjct:    6 FLSLLDFTTDELLGVIRHGIELKDLRKRGVL-FEPLKNRVLGMIFEKSSTRTRVSFEAGMIQLGGQAIFLSPRDTQLGRGEPIGDSAIVLSSMVDVVMIRTHAHSTLTEFAAKSRVPVINGLSDESHPCQLLADMQTFVEHRGSIQGKTVTWIGDGFNMCNSYIEAARQFDFQLRIACPEGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METTH (Ornithine carbamoyltransferase OS=Methanobacterium thermoautotrophicum GN=argF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 81/179 (45.25%), Postives = 108/179 (60.34%), Query Frame = 1
Query:  271 ISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +S  D   ++ +LD A + K     G       +GKT++MIF K S RTRVSFE G   +G   +YL   D+Q+G+ E   D AR L RY D IM R   H D+++LA  A+VPVINGLTD  HPCQ +AD  TI E +G  +G ++V+VGDGNNV HS LL+ + +      ACP G+
Sbjct:    5 LSVCDMDNVVDLLDLADDYK----EGKIREKILRGKTLAMIFEKSSTRTRVSFEVGAFQMGAQPLYLSASDLQLGRGEPIADTARTLSRYVDGIMIRAISHSDVVELAGEASVPVINGLTDLEHPCQALADMQTIREKLGGFDG-RLVFVGDGNNVCHSLLLITATLGMDMDVACPPGY 178          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_DESVV (Ornithine carbamoyltransferase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=argF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 76/182 (41.76%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            F  I D       K+L+RA E+K    +G R     +GK  ++IF K S RTR+SFE     LGG  I++ P + Q+G+ E  RD ARV+ RY D ++ R FG   I +LA F ++PV+N LTD  HPCQ+M+D LT+ E    L   +V ++GDGNN+ +SW+  A   PF    A P+G+
Sbjct:    5 FTRIRDLGFEGAWKVLERAKEMK---DTGYRG-RTLEGKVATLIFEKASTRTRISFEVAVRHLGGTTIFMTPAESQLGRSEPLRDTARVISRYTDCMIVRTFGQAKIDELASFGSIPVVNALTDEGHPCQVMSDVLTMYERTPDLSQVRVAWIGDGNNMANSWIEAAMYFPFELFMAFPEGY 182          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_DESVH (Ornithine carbamoyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=argF PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.669e-35
Identity = 76/182 (41.76%), Postives = 107/182 (58.79%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            F  I D       K+L+RA E+K    +G R     +GK  ++IF K S RTR+SFE     LGG  I++ P + Q+G+ E  RD ARV+ RY D ++ R FG   I +LA F ++PV+N LTD  HPCQ+M+D LT+ E    L   +V ++GDGNN+ +SW+  A   PF    A P+G+
Sbjct:    5 FTRIRDLGFEGAWKVLERAKEMK---DTGYRG-RTLEGKVATLIFEKASTRTRISFEVAVRHLGGTTIFMTPAESQLGRSEPLRDTARVISRYTDCMIVRTFGQAKIDELASFGSIPVVNALTDEGHPCQVMSDVLTMYERTPDLSQVRVAWIGDGNNMANSWIEAAMYFPFELFMAFPEGY 182          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_METCA2.151e-3541.21Ornithine carbamoyltransferase OS=Methylococcus ca... [more]
OTC_CHRVO2.151e-3543.96Ornithine carbamoyltransferase OS=Chromobacterium ... [more]
OTC_PSEAE2.809e-3541.21Ornithine carbamoyltransferase OS=Pseudomonas aeru... [more]
OTC_METFK2.809e-3542.86Ornithine carbamoyltransferase OS=Methylobacillus ... [more]
OTC_ARCFU2.809e-3543.09Ornithine carbamoyltransferase OS=Archaeoglobus fu... [more]
OTC_SILPO3.669e-3544.09Ornithine carbamoyltransferase OS=Silicibacter pom... [more]
OTC_PSEPK3.669e-3541.76Ornithine carbamoyltransferase OS=Pseudomonas puti... [more]
OTC_METTH3.669e-3545.25Ornithine carbamoyltransferase OS=Methanobacterium... [more]
OTC_DESVV3.669e-3541.76Ornithine carbamoyltransferase OS=Desulfovibrio vu... [more]
OTC_DESVH3.669e-3541.76Ornithine carbamoyltransferase OS=Desulfovibrio vu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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