FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RALEJ (Ornithine carbamoyltransferase OS=Ralstonia eutropha (strain JMP134) GN=argF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.791e-35
Identity = 78/182 (42.86%), Postives = 109/182 (59.89%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +L  SD        +LDRA  +KA  K+ + ++ P   +T++MIF K S RTR+SFE G   LGGHA++L   D Q+G+ E   DAA+V+ R  DIIM R FG   I   A  + VPVINGLT+  HPCQ++AD  T IE  G + G  V ++GD NN+ ++W+  A  + F F  + P G+
Sbjct:    9 YLQFSDLTPDEYEYLLDRARILKAKFKNYE-TWHPLHDRTLAMIFEKNSTRTRLSFEAGIHQLGGHAVFLNTRDSQLGRGEPIEDAAQVISRMVDIIMIRTFGQDIIERFAAHSRVPVINGLTNEYHPCQVLADVFTYIEQRGSIRGKTVAWIGDANNMAYTWIQAAERLGFTFHFSAPPGY 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_DECAR (Ornithine carbamoyltransferase OS=Dechloromonas aromatica (strain RCB) GN=argF PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.791e-35
Identity = 78/182 (42.86%), Postives = 108/182 (59.34%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL   DF +  +  + +R + +K   KS  + + P   +T+ MIF K S RTR+SFE G   LGG AIYL   D Q+G+ E   DAA+V+ R +DI+M R F  + I   A  + VPVINGLT+  HPCQI+AD  T IEH G ++G  V +VGD NN+ ++WL  A V+ F    + P  +
Sbjct:    6 FLQFKDFTREELEYVFERTSWIKNQFKSYQK-YWPLSDRTLVMIFEKASTRTRLSFEAGMQQLGGSAIYLNTRDSQLGRGEPVEDAAQVISRMSDIVMIRTFEQEIIERFAANSRVPVINGLTNEYHPCQILADIYTYIEHRGCIQGKTVAWVGDANNMCNTWLQAAEVLDFKVHVSTPPAY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RHOBA (Ornithine carbamoyltransferase OS=Rhodopirellula baltica GN=argF PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.258e-35
Identity = 77/181 (42.54%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  265 LHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            L + D     + +IL  A  +KA LK G+R  +  +  T++++F KPS+RTRVSFETG + LGG +++LG DD+  GKRE   D  RVL ++ D +  R   H+ +  LA++  VP+IN LTD  HPCQ +AD LT++E+ G ++G  +V+VGDGNNV  S  L  +++   F  A P G+
Sbjct:    6 LTLFDLTPQELRQILATAQTLKAKLKQGERPAI-LERYTLALLFEKPSLRTRVSFETGMNHLGGSSLFLG-DDVGWGKRESPSDFTRVLGQFVDAVACRAKSHERVEQLAEYNAVPIINSLTDLCHPCQAIADVLTLLENFGEVKGRHMVFVGDGNNVSRSLALACAMLNIQFTLARPDGY 184          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_AZOSB (Ornithine carbamoyltransferase OS=Azoarcus sp. (strain BH72) GN=arcB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 6.258e-35
Identity = 80/183 (43.72%), Postives = 110/183 (60.11%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILD-LAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +L  SDF  A    +  R   +K   K  +  + P   +T+ MIF K S RTR+SFE G   LGG AIYL   D Q+G+ E   DAA+V+ R +D++M R F  QDI++  A ++ VPVINGLT+  HPCQI+AD  T IEH G ++G  V +VGD NN+ ++WL  A V+ F    + P G+
Sbjct:    7 YLQFSDFTAAEYDHVFQRTRWIKEKFKQYE-PYHPLFDRTLVMIFEKASTRTRLSFEAGMQQLGGSAIYLNTRDSQLGRGEPVEDAAQVISRMSDLVMIRTF-EQDIIERFAAYSRVPVINGLTNEYHPCQILADIYTFIEHRGSIKGKTVAWVGDSNNMCNTWLQAAEVLDFKVRVSTPPGY 187          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC1_PSESH (Ornithine carbamoyltransferase 1, phaseolotoxin-sensitive OS=Pseudomonas syringae pv. phaseolicola GN=argF PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 6.258e-35
Identity = 74/182 (40.66%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D+    ++ ++ R  E+K L   G+  F P K + + MIF K S RTR+SFE G   LGG AI+L   D Q+G+ E   D+A+V+ R  D +M R + H ++ + A  + VPVINGL+D  HPCQ++AD  T +EH G ++G  V ++GDGNN+ +S++  A    F    ACP G+
Sbjct:    6 FLSMMDYTPDELLGLIRRGVELKDLRIRGEL-FEPLKNRVLGMIFEKSSTRTRLSFEAGMIQLGGQAIFLSHRDTQLGRGEPIADSAKVMSRMLDAVMIRTYAHSNLTEFAANSRVPVINGLSDDLHPCQLLADMQTFLEHRGSIKGKTVAWIGDGNNMCNSYIEAAIQFDFQLRVACPAGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_STAMF (Ornithine carbamoyltransferase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=arcB PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 8.173e-35
Identity = 77/185 (41.62%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGR-LEGTKVVYVGD-GNNVVHSWLLMASVIPFHFVCACPKGF 807
            DFL ++D+ +  ++ +L+ A  +K    +G+R      G+ ++MIF K S RTR+SFET    LGG A+YLG  ++Q+G+ E   D ARV+ RY D IMARV+ H+ +  LA+++ VPVINGL+D  HP Q + D  TI+E  G  L   K+V++GD G+NV+HS +L   ++    + + PKG+
Sbjct:    9 DFLTLADYSREELLFVLETAKHLKQRYLAGERVIPLLPGRHLAMIFEKSSTRTRISFETAMRELGGDALYLGWKELQLGRGETIEDTARVVSRYVDGIMARVYEHEKLEKLAQYSRVPVINGLSDLLHPAQALTDIYTIMEKKGSDLSKLKIVFIGDGGDNVLHSLMLGIGILGGKIIISSPKGY 193          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PSESM (Ornithine carbamoyltransferase OS=Pseudomonas syringae pv. tomato GN=argF PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 74/182 (40.66%), Postives = 109/182 (59.89%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D+    ++ ++ R  E+K L   G   F P K + + MIF K S RTR+SFE G   LGG AI+L   D Q+G+ E   D+A+V+ R  D +M R + H ++ + A  + VPVINGL+D  HPCQ++AD  T +EH G ++G  V ++GDGNN+ +S++  A    F    ACP G+
Sbjct:    6 FLSMMDYTPDELLGLIRRGVELKDLRNRGVL-FEPLKNRVLGMIFEKSSTRTRLSFEAGMIQLGGQAIFLSHRDTQLGRGEPIADSAKVISRMLDAVMIRTYAHDNLTEFAANSRVPVINGLSDDLHPCQLLADMQTFLEHRGSIKGKTVAWIGDGNNMCNSYIEAAIQFDFQLRVACPAGY 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METJA (Ornithine carbamoyltransferase OS=Methanocaldococcus jannaschii GN=argF PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 70/184 (38.04%), Postives = 121/184 (65.76%), Query Frame = 1
Query:  265 LHISDFD---KATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +H+ D D   +  ++KI++     K   +  ++     +GK+++++F KPS RTR+SF+     LGGH + +  ++I +GK+E  +D A+V+ RY D I+ARV+ H+ + ++AK+++VPVIN L+D  HPCQI+AD +TI E+ G+ +G K+ Y+GDGNNV +S +L ++++        PKG+
Sbjct:    1 MHLLDLDVLSREDVLKIIEYGIYFKKNRRKHEKIL---EGKSVAILFEKPSTRTRMSFDIAVYELGGHPLIMNQNEIHLGKKESIKDTAKVMGRYVDTIVARVYKHRHLEEMAKYSSVPVINALSDLAHPCQILADLMTIKEYKGKFKGLKIAYLGDGNNVCNSLILGSALVGMDTYVGTPKGY 181          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTCC_THEAC (Ornithine carbamoyltransferase, catabolic OS=Thermoplasma acidophilum GN=arcB PE=3 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.067e-34
Identity = 75/183 (40.98%), Postives = 111/183 (60.66%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + D +K  + +I+D + E+K   K+  RS+   + K + +IF KPS RTR S E     LGGHA+YL P ++Q+G+ E   D   VL R+ D I  R + H+++++LA+  ++PVIN L D  HP QI+AD +TI E  GR    K  Y+GDGNN+ +S +L A+++      A PKGF
Sbjct:    5 DILSVLDMEK-DLSEIIDLSIELK---KNRYRSYESLRNKVLGLIFEKPSTRTRTSLEVAIDQLGGHAVYLNPSEMQLGRGETISDTGHVLSRFLDAIAYRAYDHRNVVELARSTSIPVINALDDVEHPLQIVADFMTIKEKKGRFTNLKFSYIGDGNNMANSLMLGAAILGTDMYVASPKGF 183          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PTC_ENTFA (Putrescine carbamoyltransferase OS=Enterococcus faecalis GN=ptcA PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.394e-34
Identity = 81/186 (43.55%), Postives = 113/186 (60.75%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D++    + K  +  ++D + ++K  +K+G    L  K K++ MIF + S RTRVSFET    LGGH  YL P  IQ+G  E   D +RVL R  DI+MARV  H  I+DLA  AT+PVING++DYNHP Q + D  T++EH+    +LE  KVV+VGD   V  S  L+ + +  +FV   P+GF
Sbjct:    4 DYVTTETYTKEEMHYLVDLSLKIKEAIKNGYYPQL-LKNKSLGMIFQQSSTRTRVSFETAMEQLGGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVEHLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGF 188          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_RALEJ4.791e-3542.86Ornithine carbamoyltransferase OS=Ralstonia eutrop... [more]
OTC_DECAR4.791e-3542.86Ornithine carbamoyltransferase OS=Dechloromonas ar... [more]
OTC_RHOBA6.258e-3542.54Ornithine carbamoyltransferase OS=Rhodopirellula b... [more]
OTC_AZOSB6.258e-3543.72Ornithine carbamoyltransferase OS=Azoarcus sp. (st... [more]
OTC1_PSESH6.258e-3540.66Ornithine carbamoyltransferase 1, phaseolotoxin-se... [more]
OTC_STAMF8.173e-3541.62Ornithine carbamoyltransferase OS=Staphylothermus ... [more]
OTC_PSESM1.067e-3440.66Ornithine carbamoyltransferase OS=Pseudomonas syri... [more]
OTC_METJA1.067e-3438.04Ornithine carbamoyltransferase OS=Methanocaldococc... [more]
OTCC_THEAC1.067e-3440.98Ornithine carbamoyltransferase, catabolic OS=Therm... [more]
PTC_ENTFA1.394e-3443.55Putrescine carbamoyltransferase OS=Enterococcus fa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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