FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_METBF (Ornithine carbamoyltransferase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=argF PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.439e-39
Identity = 83/183 (45.36%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L I+D  K  I ++L+ A ++K   K+G+ +    K K++ MIF K S RTRVSFE   +  GGH++YL   DIQ+G+ E   D AR L  Y   IMARV  H+ +  LAK++T+PVIN L+D  HPCQI+ D +TI+E+  + E  K  +VGDGNNV +S LL ++++   F  ACPKG+
Sbjct:    4 DVLSITDLSKEEIYELLESAMDLKEKRKAGEPTEY-LKNKSLGMIFEKASTRTRVSFEVAMTDFGGHSLYLNSRDIQIGRGETIEDTARTLSGYLHGIMARVMSHETVEKLAKYSTIPVINALSDREHPCQILGDFMTIMEYKDKFEDLKFAWVGDGNNVCNSALLGSAIVGMEFAVACPKGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_NITSB (Ornithine carbamoyltransferase OS=Nitratiruptor sp. (strain SB155-2) GN=argF PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.455e-39
Identity = 85/183 (46.45%), Postives = 121/183 (66.12%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + DF K  I+++++ A  +KA  K   R F+P+ + KT++MIF K S RTRVSFE G   LGG  ++L  +DIQ+G+ E  +D ARV+ R  D++M R +    + + A F+ VPVINGLT+  HP Q+MAD LT+IE+ G+ +   V YVGDGNN+ HSWL++AS + F    A PKG+
Sbjct:    4 FLTLKDFTKEEILEMIELARSIKAQTKR--REFVPYMENKTLAMIFEKSSTRTRVSFEVGIYQLGGIGLFLSKNDIQLGRGEPMKDTARVVSRICDMVMIRTYEQSKLEEFAAFSQVPVINGLTNEYHPVQLMADYLTMIEY-GKADSPVVAYVGDGNNMTHSWLMLASKLGFTLRIATPKGY 183          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_DESPS (Ornithine carbamoyltransferase OS=Desulfotalea psychrophila GN=argF PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 79/179 (44.13%), Postives = 117/179 (65.36%), Query Frame = 1
Query:  271 ISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            + DF    I  ++ RA E+K     G R      GK++++IF KPS RTRVSFE+    LGG  ++L   D Q+ + E  +D ARV+ RY D I+ R FG + + +LA++ATVPVIN LTD +HPCQI++D +T+IE  G ++  K+V+VGDGNN+ +SW+  A+ + F  + ACP+G+
Sbjct:    8 LGDFTGEEIASLIARAIELKEERSRGIRH-QQLAGKSVALIFEKPSTRTRVSFESAMYGLGGQVLFLSGRDTQLSRSEPLKDMARVMSRYVDGIVVRTFGQEVVNELAQYATVPVINALTDLHHPCQILSDIMTVIEKKGAIQDLKIVWVGDGNNMANSWIQAAAKLGFELILACPEGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACST (Ornithine carbamoyltransferase OS=Bacillus stearothermophilus GN=argF PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.188e-39
Identity = 87/183 (47.54%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DFL + DF    I+ +L  AA++KA  K+G  S+ P  GKTM+MIF KPS  TRVSFE G   LGG A+YL  + +Q+G+ E   D ARVL +Y  +IM R F HQ + +LA++A+    NGLTD +HPCQ +AD LTI E     +G K+ YVGDGNNV ++ L+ A+ +      ACP G+
Sbjct:   11 DFLTLLDFSTEEILDLLALAADLKAKQKAGV-SYTPLSGKTMAMIFEKPS-GTRVSFEVGMIQLGGQAMYLNGNHLQLGRGETIADTARVLSQYVRVIMIRTFAHQKVEELAEYASFRSSNGLTDDDHPCQALADLLTIYEVKKTFQGVKLAYVGDGNNVANALLVAAAKVGMDVAIACPPGY 191          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_RALSO (Ornithine carbamoyltransferase OS=Ralstonia solanacearum GN=argF PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.143e-39
Identity = 81/189 (42.86%), Postives = 117/189 (61.90%), Query Frame = 1
Query:  241 PKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            P ++   +L   DF       +LDR+  +KA  K+ + ++ P   +T++MIF K S RTR+SFE G   LGGHA++L   D Q+G+ E   DAA+V+ R  DIIM R FG + I   A  + VPVINGLT+  HPCQ++AD  T IEH G ++G  V +VGD NN+ ++W+  A ++ F F  + PKG+
Sbjct:    3 PPSKIKHYLQFKDFSLEEYAYLLDRSRILKAKFKNYE-TWHPLHDRTLAMIFEKNSTRTRLSFEAGIHQLGGHAVFLNTRDSQLGRGEPIEDAAQVISRMTDIIMIRTFGQEIIERFATHSRVPVINGLTNEYHPCQVLADIFTFIEHRGPIQGKTVTWVGDANNMAYTWIQAAEILGFRFHFSAPKGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BRUSU (Ornithine carbamoyltransferase OS=Brucella suis GN=argF PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.143e-39
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF KPS RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA++ATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGNNV+HS +  A+   F+   A PKG
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKPSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSEAIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGNNVLHSLVEAAARFDFNVNIATPKG 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BRUO2 (Ornithine carbamoyltransferase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=argF PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 7.143e-39
Identity = 86/181 (47.51%), Postives = 114/181 (62.98%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            F+ +S      +  IL+ A   KA LK+G+    P+ GK ++MIF KPS RTRVSF+ G   LGG  I L   ++Q+G+ E   D A+VL RY D IM R   H+ +L+LA++ATVPVIN LTD  HPCQIMAD LT  EH G ++G    ++GDGNNV+HS +  A+   F+   A PKG
Sbjct:   10 FIDLSTVPATELRAILEDAKARKARLKAGEVE-RPYAGKVLAMIFEKPSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGNNVLHSLVEAAARFDFNVNIATPKG 189          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_GEOMG (Ornithine carbamoyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=argF PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.329e-39
Identity = 76/182 (41.76%), Postives = 116/182 (63.74%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL ++ + K  +  +     E+K   K G    +  +GK++++IF K S RTR+SFE G   LG H +++     QMG+ E  RD ARV+ RY D +M R +G + + + A++++VPVINGLTD  HPCQIMAD  T+IEH G+ +G K  +VGDGNN+ ++W+  A+++ F    ACP+G+
Sbjct:    5 FLALNQYTKEALDALFALTRELKEEQKKGIPHRI-LEGKSVALIFEKSSTRTRISFEVGVHQLGAHPLFISSATSQMGRGEPVRDTARVMARYCDGVMIRTYGQEIVEEFARYSSVPVINGLTDLFHPCQIMADLFTVIEHKGKYDGLKFAWVGDGNNMANTWIEAAAILGFDLALACPEGY 185          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CAMC1 (Ornithine carbamoyltransferase OS=Campylobacter concisus (strain 13826) GN=arcB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.329e-39
Identity = 86/183 (46.99%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL ++DF K  I ++++ A ++K   K+  R F P+ K + ++MIF K S RTRVSF+ G   LGG+A++L  +DIQ+G+ E  RD ARV+ R  D+ M RV  H+ + + AKF++VPVINGL+D  HP Q+MAD LT++E      G KV YVGDGNN+ HSWL++AS +      A PKG+
Sbjct:    4 FLTLNDFSKDEIEQMINLARKIKKEAKT--REFKPYLKDQKLAMIFEKSSTRTRVSFDVGMHELGGYALFLSKNDIQIGRGEPIRDTARVISRMCDMAMLRVDKHETLEEFAKFSSVPVINGLSDKFHPVQLMADYLTMLEFSA---GEKVAYVGDGNNMTHSWLMLASKLGLELRVATPKGY 181          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BACSU (Ornithine carbamoyltransferase OS=Bacillus subtilis GN=argF PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.329e-39
Identity = 90/200 (45.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:  211 TSAPNSIHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLP-FKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            T    S++GK      D L + D  +  I  +L  A E+K           P F GKT++MIF K S RTRVSFE G + LGG A++L   D+Q+G+ E   D A+VL  Y D IM R F H+ + +LAK A +PVINGLTD  HPCQ +AD LTI E  G+L+G KV Y+GDGNNV HS ++  + +      A PKG+
Sbjct:    3 TVTQTSLYGK------DLLTLKDLSEEDINALLAEAGELK------QNKIQPIFHGKTLAMIFEKSSTRTRVSFEAGMAQLGGSALFLSQKDLQLGRGETVADTAKVLSGYVDAIMIRTFEHEKVEELAKEADIPVINGLTDKYHPCQALADLLTIKEIKGKLKGVKVAYIGDGNNVAHSLMIGCAKMGCDISIASPKGY 190          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_METBF1.439e-3945.36Ornithine carbamoyltransferase OS=Methanosarcina b... [more]
OTC_NITSB2.455e-3946.45Ornithine carbamoyltransferase OS=Nitratiruptor sp... [more]
OTC_DESPS4.188e-3944.13Ornithine carbamoyltransferase OS=Desulfotalea psy... [more]
OTC_BACST4.188e-3947.54Ornithine carbamoyltransferase OS=Bacillus stearot... [more]
OTC_RALSO7.143e-3942.86Ornithine carbamoyltransferase OS=Ralstonia solana... [more]
OTC_BRUSU7.143e-3947.51Ornithine carbamoyltransferase OS=Brucella suis GN... [more]
OTC_BRUO27.143e-3947.51Ornithine carbamoyltransferase OS=Brucella ovis (s... [more]
OTC_GEOMG9.329e-3941.76Ornithine carbamoyltransferase OS=Geobacter metall... [more]
OTC_CAMC19.329e-3946.99Ornithine carbamoyltransferase OS=Campylobacter co... [more]
OTC_BACSU9.329e-3945.00Ornithine carbamoyltransferase OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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