FC878130

Overview
NameFC878130
Unique NameFC878130
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length809
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_HALHL (Ornithine carbamoyltransferase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=argF PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 2.298e-37
Identity = 77/182 (42.31%), Postives = 110/182 (60.44%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + D     I ++L RA E++ + ++G     P +G+ + M+F K S RTRVSFE G + LGGHA++L P D Q+G+ E   D ARV+ R  D +M R FGH  +   A  +  PVINGL+D  HPCQ++AD  T  EH G +   +V ++GDGNN+ HSW+  A ++ F    A P G+
Sbjct:    4 FLTLRDCSVDEIHQLLRRATELRDMHRAG-HLHQPLQGRVLGMVFEKSSTRTRVSFEAGMAQLGGHALFLSPRDTQLGRGEPVEDTARVVSRMVDAVMIRTFGHDMLERFAGHSAAPVINGLSDLCHPCQLLADLQTFTEHRGPITDRRVAWIGDGNNMCHSWIEAAGLLGFDLHIAAPPGY 184          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SPHWW (Ornithine carbamoyltransferase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=argF PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.001e-37
Identity = 85/186 (45.70%), Postives = 111/186 (59.68%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVK----ALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL ++D   A +  +LD A   K     L K       P  G T++MIF K S RTRVSF+     LGG  I +    +Q+G+ E   D ARVL RY D IM R   H+  +DLA++A VPVINGLTD +HPCQIMAD  TI+EH GR+EG    ++GDGNNV+HS +   S++ F     CP+G+
Sbjct:    5 FLDLADAGAAGVRLMLDEAVSRKKARAGLPKGAPDRDAPLAGHTLAMIFEKNSTRTRVSFDMAMRQLGGTTIVMDAGSMQLGRGETIADTARVLSRYVDAIMIRTDDHRKAVDLARYADVPVINGLTDRSHPCQIMADLQTILEHKGRVEGLGWAWLGDGNNVLHSIVEAGSLLGFPVRIGCPEGY 190          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_MOUSE (Ornithine carbamoyltransferase, mitochondrial OS=Mus musculus GN=Otc PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.001e-37
Identity = 82/196 (41.84%), Postives = 117/196 (59.69%), Query Frame = 1
Query:  235 GKPKAEQT-----DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            GKP   Q      D L + +F    I  +L  +A++K  +K         +GK++ MIF K S RTR+S ETGF+LLGGH  +L   DI +G  E   D ARVL    D ++ARV+   D+  LAK A++P++NGL+D  HP QI+AD LT+ EH G L+G  + ++GDGNN++HS ++ A+    H   A PKG+
Sbjct:   28 GKPVQSQVQLKGRDLLTLKNFTGEEIQYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPSFLTTQDIHLGVNESLTDTARVLSSMTDAVLARVYKQSDLDTLAKEASIPIVNGLSDLYHPIQILADYLTLQEHYGSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGY 223          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_BOVIN (Ornithine carbamoyltransferase, mitochondrial OS=Bos taurus GN=OTC PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.001e-37
Identity = 80/193 (41.45%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  229 IHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +  K + +  D L + +F    I  +L  +A++K  +K         +GK++ MIF K S RTR+S ETGF+LLGGH  +L  DDI +G  E   D ARVL    D ++ARV+   D+  LAK A++P++NGL+D  HP QI+AD LT+ EH G L+G  + ++GDGNN++HS ++ A+    H   A PKG+
Sbjct:   31 LQDKVQLKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTDDIHLGVNESLTDTARVLSSMTDAVLARVYKQSDLDLLAKEASIPIVNGLSDLYHPIQILADYLTLQEHYGSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQVATPKGY 223          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: PTC_LACLA (Putrescine carbamoyltransferase OS=Lactococcus lactis subsp. lactis GN=ptcA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.920e-37
Identity = 86/186 (46.24%), Postives = 116/186 (62.37%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHV---GRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            DF+   D+ K  I+ I+    ++KA +K+G    L  K K++ MIF + S RTRVSFET  + LGGHA YL P  IQ+G  E   D + VL R  DIIMARV  H+ + +LAK  T+PV+NG++DYNHP Q + D  T+IEH+    +LE  KVV+VGD   V  S  L+A+ +  HFV   PKG+
Sbjct:    8 DFITTEDYTKEEILDIVTLGLKIKAAIKNGYYPPL-LKNKSLGMIFQQTSTRTRVSFETAMTQLGGHAEYLAPGQIQLGGHETIEDTSTVLSRLLDIIMARVDRHESVNNLAKHTTIPVLNGMSDYNHPTQEVGDLTTMIEHLPAGKKLEDCKVVFVGDATQVCFSLGLIATKMGMHFVHFGPKGY 192          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_SULNB (Ornithine carbamoyltransferase OS=Sulfurovum sp. (strain NBC37-1) GN=argF PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.920e-37
Identity = 80/183 (43.72%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  262 FLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPF-KGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            FL + DF+K  +++++  A ++KA  K   + F+P+ + +T+ MIF K S RTRVSFETG   LGG  ++L  +DIQ+G+ E  +D +RV+ R  D++M R F    + + A ++ VPVINGLTD  HP Q+M D LT+IE  G+ +     YVGDGNN+ HSWL++A+ + F    A PKG+
Sbjct:    4 FLTLKDFNKEELLEMIALAQKIKAQTKQ--KQFVPYLERQTLGMIFEKSSTRTRVSFETGIYQLGGIGLFLSANDIQLGRGEPMKDTSRVISRMVDMVMIRTFEQSKLEEFAAYSKVPVINGLTDSYHPVQLMTDYLTMIE-FGKADDPICAYVGDGNNMTHSWLMLAAKLGFELRVATPKGY 183          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PIG (Ornithine carbamoyltransferase, mitochondrial (Fragment) OS=Sus scrofa GN=OTC PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.920e-37
Identity = 80/193 (41.45%), Postives = 118/193 (61.14%), Query Frame = 1
Query:  229 IHGKPKAEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            +  K + +  D L + +F    I  IL  +A++K  +K         +GK++ MIF K S RTR+S ETGF+LLGGH  +L   DI +G  E  +D ARVL    D ++ARV+   D+  LA+ A++P+INGL+D  HP QI+AD LT+ EH G L+G  + ++GDGNN++HS ++ A+    H   A PKG+
Sbjct:    5 LQNKVQLKGRDLLTLKNFTGEEIKYILWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQDIHLGVNESLKDTARVLSSMTDAVLARVYKQSDLDILAQEASIPIINGLSDLYHPIQILADYLTLQEHYGALKGLTLSWIGDGNNILHSIMMSAAKFGMHLQVATPKGY 197          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_CHICK (Ornithine carbamoyltransferase, mitochondrial OS=Gallus gallus GN=OTC PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.920e-37
Identity = 80/183 (43.72%), Postives = 114/183 (62.30%), Query Frame = 1
Query:  259 DFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            D L + ++    +  +L  A+++K  +K         +GK+++MIF K S RTR+S ETGF+LLGGH+ +L   DI +G  E   D ARVL    + I+ARV+ H D+  + K AT+PVINGL+D  HP QI+AD LT+ EH G L G  + ++GDGNNV+HS +  A+ +  H   A PKGF
Sbjct:   41 DLLTLQNYTADELKYLLWVASDLKQRIKDKGEYLPLMQGKSLAMIFEKRSTRTRLSAETGFALLGGHSSFLTKQDIHLGTNESLTDTARVLSSMTNAILARVYKHNDLDLMTKEATIPVINGLSDLYHPLQILADYLTLQEHYGGLNGLTIAWIGDGNNVLHSIMTSAAKLGMHLRIATPKGF 223          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_AGRT5 (Ornithine carbamoyltransferase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=argF PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.920e-37
Identity = 83/186 (44.62%), Postives = 110/186 (59.14%), Query Frame = 1
Query:  247 AEQTDFLHISDFDKATIMKILDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKG 804
            A    FL +S      +  ILD A   K   K+G     P  GK ++MIF KPS RTRVSF+ G   LGG  ++L   ++Q+G+ E   D A+VL RY D IM R   H  +L+LA+ ATVPVINGLTD  HPCQIMAD +T  EH G ++G  + + GDGNNV+HS++  ++   +    A P G
Sbjct:    2 ASPKHFLDLSAVGPQDLRTILDDARARKVATKAGTAE-KPLAGKMLAMIFEKPSTRTRVSFDVGMRQLGGETLFLSGTEMQLGRAETIGDTAKVLSRYVDAIMIRTTDHSRLLELAEHATVPVINGLTDDTHPCQIMADIMTFEEHRGPVKGKTIAWTGDGNNVLHSFVEGSARFGYRMTMAVPMG 186          
BLAST of FC878130 vs. ExPASy Swiss-Prot
Match: OTC_PICTO (Ornithine carbamoyltransferase OS=Picrophilus torridus GN=argF PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.119e-37
Identity = 80/167 (47.90%), Postives = 108/167 (64.67%), Query Frame = 1
Query:  307 LDRAAEVKALLKSGDRSFLPFKGKTMSMIFAKPSMRTRVSFETGFSLLGGHAIYLGPDDIQMGKREETRDAARVLCRYNDIIMARVFGHQDILDLAKFATVPVINGLTDYNHPCQIMADALTIIEHVGRLEGTKVVYVGDGNNVVHSWLLMASVIPFHFVCACPKGF 807
            L+   E+   LK  DR+    + K ++MIF KPS RTR S E     L GHAIYL P+D+Q+G+ E   D ARVL R+ DII  R F H D+++LA+ ATVPV+N L +  HP QI+AD +T+ E   RL+G K+ Y+GDGNN+ +S LL +S++      ACPKGF
Sbjct:   15 LEDIIELSIKLKK-DRTIKFSEKKILAMIFEKPSTRTRNSLEVAMEQLNGHAIYLNPNDMQIGRGETIADTARVLSRFVDIISYRAFNHDDVVELARHATVPVLNALDNLEHPMQIVADFMTVYEKKHRLKGLKLAYIGDGNNMANSLLLGSSILGVDISIACPKGF 180          
The following BLAST results are available for this feature:
BLAST of FC878130 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
OTC_HALHL2.298e-3742.31Ornithine carbamoyltransferase OS=Halorhodospira h... [more]
OTC_SPHWW3.001e-3745.70Ornithine carbamoyltransferase OS=Sphingomonas wit... [more]
OTC_MOUSE3.001e-3741.84Ornithine carbamoyltransferase, mitochondrial OS=M... [more]
OTC_BOVIN3.001e-3741.45Ornithine carbamoyltransferase, mitochondrial OS=B... [more]
PTC_LACLA3.920e-3746.24Putrescine carbamoyltransferase OS=Lactococcus lac... [more]
OTC_SULNB3.920e-3743.72Ornithine carbamoyltransferase OS=Sulfurovum sp. (... [more]
OTC_PIG3.920e-3741.45Ornithine carbamoyltransferase, mitochondrial (Fra... [more]
OTC_CHICK3.920e-3743.72Ornithine carbamoyltransferase, mitochondrial OS=G... [more]
OTC_AGRT53.920e-3744.62Ornithine carbamoyltransferase OS=Agrobacterium tu... [more]
OTC_PICTO5.119e-3747.90Ornithine carbamoyltransferase OS=Picrophilus torr... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAQ12YE24RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ12YE24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878130 ID=FC878130; Name=FC878130; organism=Citrus clementina; type=EST; length=809bp
GCTTGTTACCAGTTCCCACCAAAATCAATGGCGGCGATTTCAAGTTGCTG
TACATATCGATCGGGCAAAATGCCTCTATCCGCTTCTTCTTCTTCTTCTT
TCTCCGGAAAGTTTCTCCCGAAACAATCGCGATTTCCTGCCACGTCGGCG
TCTGCTGCCCTGACATTTCCGGTCCTCCGAAGAAGCATCACGTGCCAGGC
ATCCTCGGCCACGTCAGCTCCTAATTCCATCCACGGCAAACCAAAAGCAG
AGCAGACGGATTTTCTGCACATCAGCGATTTTGACAAAGCTACCATAATG
AAGATTTTAGACCGAGCTGCTGAGGTCAAGGCACTACTTAAGTCAGGGGA
TAGGTCATTTTTGCCGTTTAAAGGGAAGACAATGTCTATGATCTTTGCAA
AGCCATCCATGAGAACTCGGGTTTCATTTGAAACAGGGTTTTCCTTGTTG
GGAGGCCATGCTATATACTTAGGACCTGATGATATCCAGATGGGAAAGAG
AGAGGAAACACGTGACGCTGCTCGTGTTCTATGTCGCTACAATGATATTA
TTATGGCACGTGTTTTTGGTCATCAGGACATTCTTGATCTCGCTAAATTT
GCAACTGTACCAGTTATCAATGGCTTGACAGACTACAACCATCCTTGCCA
AATAATGGCTGATGCCCTCACCATTATTGAACACGTTGGTCGTCTGGAAG
GAACCAAGGTTGTCTATGTTGGAGATGGAAATAACGTAGTGCACTCTTGG
CTTTTGATGGCATCAGTTATTCCTTTCCACTTTGTTTGTGCCTGCCCCAA
AGGTTTTGA
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