FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y477_CAMFF (Putative metalloprotease CFF8240_0477 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=CFF8240_0477 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHE 791
            E+ ++F +NE +R++N++ R  D  TDVLS     P   +P   +G IVI+ + A+ +A E GHS  DEI +L  HGLLH+LGFDHE
Sbjct:   23 EVELVFVSNEEMREINRDKRGMDKTTDVLSF----PLTYVPHFPIGSIVINTDLASSKALELGHSTDDEIALLFTHGLLHILGFDHE 105          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3781_PSEMY (Putative metalloprotease Pmen_3781 OS=Pseudomonas mendocina (strain ymp) GN=Pmen_3781 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            EL+I   + E  R+LN+ WR +D+AT+VLS    +P+  L I +LGD+VI V    R+A E+G +L      L++HG LHLLG+DH I E    EM
Sbjct:   36 ELTIRLVDEEEGRELNRTWRHKDYATNVLSFPAEIPDGILDIPLLGDLVICVPVLEREAAEQGKTLEAHWAHLVIHGCLHLLGYDH-IEEDEALEM 130          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y374_RHIEC (Putative metalloprotease RHE_CH00374 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=RHE_CH00374 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            E+S++F ++  I+ +N EWR +D  T+VLS     V   K+P  MLGDI+I+ ET  R+A+E   S  D +  L+VHG LHLLG+DH  + +AE
Sbjct:   50 EVSLVFTDDASIQDINAEWRGKDKPTNVLSFPAFPVQRGKVPGPMLGDIIIARETVEREAQELEKSFDDHLTHLLVHGFLHLLGYDHMNNAEAE 143          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1647_STAAR (Putative metalloprotease SAR1647 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1647 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  P++    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1442_STAAB (Putative metalloprotease SAB1442c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1442c PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  P++    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPDIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1363_BACHD (Putative metalloprotease BH1363 OS=Bacillus halodurans GN=BH1363 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 45/105 (42.86%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHV---------PELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            ELS+ F ++E I++LN+++R +D  TDV+S + +          PE   P L LGDI++S+     QAE  GHS   E+  L+VHG LHLLG+DH +SE  E +M
Sbjct:   41 ELSLSFVSDEEIQELNRDYRGKDQPTDVISFALNEVGEGEQPVEPEAGTPNL-LGDIIVSIPRCQEQAEAYGHSFERELAFLIVHGFLHLLGYDH-MSEDEEKKM 143          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y042_SINMW (Putative metalloprotease Smed_0042 OS=Sinorhizobium medicae (strain WSM419) GN=Smed_0042 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.059e-13
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            E+ ELS++F +++ I+ +N EWR +D  T+VLS     V   K+P LMLGDIV++ ET  R+A E        +  L+VHG LHL G+DH   ++AE
Sbjct:   47 EAAELSLVFTDDQSIKAINAEWRGQDKPTNVLSFPAFPVTPGKMPGLMLGDIVVAHETLRREAAELEKPFDAHLTHLLVHGFLHLFGYDHIEDDEAE 143          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: YQFG_BACSU (Putative metalloprotease yqfG OS=Bacillus subtilis GN=yqfG PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  498 AVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-QHVPELKLPIL------MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            A E  G  +  E+S+   +N+ I ++NKE+R +D  TDV+S + +   E ++ I+      +LGDI+IS +    QAEE  HS   E+  L VHG LHLLG+DH   E+ E
Sbjct:   29 AAEREGVQDQAEVSVTIVSNDDIHQINKEYRGKDAPTDVISFALEEEGEGEIEIVGAEMPPVLGDIIISADRTREQAEEYNHSFKRELGFLAVHGFLHLLGYDHMTKEEEE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2440_CLOD6 (Putative metalloprotease CD2440 OS=Clostridium difficile (strain 630) GN=CD2440 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 44/115 (38.26%), Postives = 69/115 (60.00%), Query Frame = 3
Query:  483 KTRDTAVE--DVGGFE-SIELSILFCNNEFIRKLNKEWRDEDHATDVLS---MSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            K +D  +E  D  G++ + E+S+ F +N+ I +LN+E+R  D  TDVLS   +S    +++L    LGDIV+S+E A  Q+ E  HS   E+  L+ H + HLLG+DH+  E  +
Sbjct:   21 KIKDIIIECLDYEGYDDNYEVSLSFVDNKEIHELNREYRGVDRVTDVLSFPLLSDDFEDVELEEESLGDIVVSLERALEQSIEYNHSFEREVCFLICHSMFHLLGYDHDTDENTK 135          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1585_THEEB (Putative metalloprotease tlr1585 OS=Thermosynechococcus elongatus (strain BP-1) GN=tlr1585 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.383e-13
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  480 YKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPI---LMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            ++T    VE   G +  EL++    +  I+ LN+++RD D  TDVL+ +     L LP+     LGDI+IS +TA RQA E GH+L  EI  L  HGLLHLLG+DH
Sbjct:   27 FRTWMAMVEPTQG-KVYELTLRLTTDAAIQALNQQYRDRDTPTDVLAFATRDGALPLPLGEPEYLGDIIISGDTARRQAAESGHTLSIEIAWLACHGLLHLLGWDH 131          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y477_CAMFF1.059e-1345.98Putative metalloprotease CFF8240_0477 OS=Campyloba... [more]
Y3781_PSEMY1.059e-1344.79Putative metalloprotease Pmen_3781 OS=Pseudomonas ... [more]
Y374_RHIEC1.059e-1344.68Putative metalloprotease RHE_CH00374 OS=Rhizobium ... [more]
Y1647_STAAR1.059e-1337.50Putative metalloprotease SAR1647 OS=Staphylococcus... [more]
Y1442_STAAB1.059e-1337.50Putative metalloprotease SAB1442c OS=Staphylococcu... [more]
Y1363_BACHD1.059e-1342.86Putative metalloprotease BH1363 OS=Bacillus halodu... [more]
Y042_SINMW1.059e-1343.30Putative metalloprotease Smed_0042 OS=Sinorhizobiu... [more]
YQFG_BACSU1.383e-1339.64Putative metalloprotease yqfG OS=Bacillus subtilis... [more]
Y2440_CLOD61.383e-1338.26Putative metalloprotease CD2440 OS=Clostridium dif... [more]
Y1585_THEEB1.383e-1344.34Putative metalloprotease tlr1585 OS=Thermosynechoc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
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