FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1460_LEIXX (Putative metalloprotease Lxx14600 OS=Leifsonia xyli subsp. xyli GN=Lxx14600 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.081e-13
Identity = 42/98 (42.86%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-----VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            EL+IL  +   + +L+ +W DE   TDVLS           +   P  +LGD+V+  + A  QAE  GH+L+DE+ +LM HG+LHLLGFDH  +E AE
Sbjct:   36 ELAILLVDEAAMEQLHVQWMDEPGPTDVLSFPMDELRPGTEDEPSPAGLLGDVVLCPQVAQVQAETTGHTLMDELLLLMTHGILHLLGFDH--AEPAE 131          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y407_RHIME (Putative metalloprotease R00407 OS=Rhizobium meliloti GN=R00407 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ++ ELS++F +++ IR +N EWR +D AT+VLS     V   ++P  MLGDIV++ ET  R+A E        +  L+VHG LHL G+DH   ++AE
Sbjct:   47 QAAELSLVFTDDQSIRAINAEWRGQDKATNVLSFPAFPVTPGRMPGPMLGDIVVAHETLRREAAELEKPFDAHLTHLLVHGFLHLFGYDHIEDDEAE 143          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3031_ALKMQ (Putative metalloprotease Amet_3031 OS=Alkaliphilus metalliredigens (strain QYMF) GN=Amet_3031 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPI---LMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAE 815
            E+S+ F +N+ I+ LN+ +R +D+ATDVLS          P+    +LGD+VISVE A  QA+E  HS   E+  LMVH L HL+G+DH   E+ EA+
Sbjct:   42 EVSLSFVSNKEIQNLNRTYRGKDYATDVLSFPLVDDTDGFPMGEEKLLGDVVISVEKAVEQAKEYQHSFEREMGFLMVHSLFHLMGYDH--LEETEAQ 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2126_SYNS9 (Putative metalloprotease Syncc9902_2126 OS=Synechococcus sp. (strain CC9902) GN=Syncc9902_2126 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 41/90 (45.56%), Postives = 58/90 (64.44%), Query Frame = 3
Query:  528 IELSILFCNNEFIRKLNKEWRDEDHATDVLSMS--QHVPE-LKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            + L + F N+  I +LN +WR +   TDVLS +     P+ L+   + LGDI++SV+TA RQA+   HSL  E+  L+ HGLLHLLG+DH
Sbjct:   57 VSLGLHFTNDAGIAELNSQWRQKSGPTDVLSFAALDDTPDWLEGEAVELGDIIVSVDTAQRQAQNHNHSLGYELHWLISHGLLHLLGWDH 146          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y200_PROM4 (Putative metalloprotease P9211_02001 OS=Prochlorococcus marinus (strain MIT 9211) GN=P9211_02001 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 39/91 (42.86%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  528 IELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLP----ILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            + + + F +++ I K+N++WR ++  TDVLS      +   P     L LGDI++SV+TA +QA+E  HSL  E+  L+ HGLLHLLG+DH
Sbjct:   66 LSIGLQFTDDKSIMKINQQWRAKEEPTDVLSFPVIDQDSIAPPPNHFLELGDIIVSVQTAQKQADENNHSLDKELCWLVSHGLLHLLGWDH 156          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1613_STRSV (Putative metalloprotease SSA_1613 OS=Streptococcus sanguinis (strain SK36) GN=SSA_1613 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 3
Query:  516 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPI-------------------LMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            G E+ E+++ F +NE   +LN E+RD D  TDV+S+ ++ PEL + +                     +G++ ISV+ A  QAEE GHS   E+  L VHG LH+ G+DH   E+ EAEM
Sbjct:   32 GKENKEMAVTFVSNERSHELNLEYRDTDRPTDVISL-EYKPELDIAVDEEDLLDHPELAEMLEDFDAYIGELFISVDKAREQAEEYGHSFEREMGFLAVHGFLHINGYDHYTPEE-EAEM 149          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1273_DEIGD (Putative metalloprotease Dgeo_1273 OS=Deinococcus geothermalis (strain DSM 11300) GN=Dgeo_1273 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 42/95 (44.21%), Postives = 55/95 (57.89%), Query Frame = 3
Query:  516 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISE 800
            G E  E++++   +  IR L +E   ED  TDVLS     P        LGDI+IS++TA RQA  RGHSL  E+ +L  HGL HL+G DH  +E
Sbjct:   30 GVEDREVTVVLVGDRTIRALKREHWGEDAPTDVLSFPTWEPGDPFMPPHLGDIIISLDTAGRQAAARGHSLTREVALLASHGLTHLVGHDHPHAE 124          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1087_HELPJ (Putative metalloprotease jhp_1087 OS=Helicobacter pylori J99 GN=jhp_1087 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  534 LSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHE 791
            + ++  ++E +R++N++ RD D+ATDVLS     P   +P   LG +VI+   A   A + GHSL DEI +L +HG+LHLLG+DHE
Sbjct:   30 IELVLVSDETMREINRDLRDCDYATDVLSF----PLEAIPHTPLGSVVINAPLAQENALKLGHSLEDEIALLFIHGVLHLLGYDHE 111          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y053_SYNY3 (Putative metalloprotease slr0053 OS=Synechocystis sp. (strain PCC 6803) GN=slr0053 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.024e-13
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 3
Query:  525 SIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKL-------PILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            S EL++LF  +  I++LN+++R +D  TDVL+ +    +  L         L LGDIVIS+E A  QA ERGHS   E+  L  HGLLHLLG+DH
Sbjct:   57 SYELTLLFTGDRRIQELNRKFRHQDKPTDVLAFAALEGDFPLIESEETEEPLYLGDIVISLERADHQARERGHSAKLEVVWLTAHGLLHLLGWDH 151          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y265_MESFL (Putative metalloprotease Mfl265 OS=Mesoplasma florum GN=Mfl265 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.255e-13
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 3
Query:  528 IELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL---MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            I LSI F ++E  +K+N+E+R+  +  DV S    +   ++  L    +GDI I +E A R++ +  HSL +E+  L  HG LHL+G+DHE +EK E EM
Sbjct:   38 INLSITFLDSEPAQKINQEYRNHSYIPDVTSFPIEMSPQEIKALGYQEIGDIFICIEEAERKSIKYDHSLKEEMGFLFTHGFLHLMGYDHETNEKDEEEM 137          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y1460_LEIXX3.081e-1342.86Putative metalloprotease Lxx14600 OS=Leifsonia xyl... [more]
Y407_RHIME4.024e-1342.27Putative metalloprotease R00407 OS=Rhizobium melil... [more]
Y3031_ALKMQ4.024e-1344.90Putative metalloprotease Amet_3031 OS=Alkaliphilus... [more]
Y2126_SYNS94.024e-1345.56Putative metalloprotease Syncc9902_2126 OS=Synecho... [more]
Y200_PROM44.024e-1342.86Putative metalloprotease P9211_02001 OS=Prochloroc... [more]
Y1613_STRSV4.024e-1338.33Putative metalloprotease SSA_1613 OS=Streptococcus... [more]
Y1273_DEIGD4.024e-1344.21Putative metalloprotease Dgeo_1273 OS=Deinococcus ... [more]
Y1087_HELPJ4.024e-1344.19Putative metalloprotease jhp_1087 OS=Helicobacter ... [more]
Y053_SYNY34.024e-1346.32Putative metalloprotease slr0053 OS=Synechocystis ... [more]
Y265_MESFL5.255e-1340.00Putative metalloprotease Mfl265 OS=Mesoplasma flor... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
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