FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12412 contig Ccv1_Contig12412:102..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2719_ANADE (Putative metalloprotease Adeh_2719 OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=Adeh_2719 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 47/99 (47.47%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  516 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEA 812
            G E  ELSIL   +  IR LN+EWR +D ATDVLS    + E      +LGD+VIS++TAAR+A   G  +  E+   + HG+LHLLG+DHE    A A
Sbjct:   31 GREDAELSILLVTDRRIRTLNREWRQKDQATDVLSFP--ISEPPGAGALLGDVVISLDTAARRARSDGRRVGAELDRYLAHGILHLLGYDHERPADARA 127          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1484_LISMF (Putative metalloprotease LMOf2365_1484 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=LMOf2365_1484 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP------------ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +  ELS+ F  NE IR++N+E+RD+D ATDV+S +                +L+ P  MLGDI+IS E A  QA++ GH+   E+  L VHGLLHLLG+DH
Sbjct:   38 QGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETP-RMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDH 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1475_LISMC (Putative metalloprotease Lm4b_01475 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=Lm4b_01475 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP------------ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +  ELS+ F  NE IR++N+E+RD+D ATDV+S +                +L+ P  MLGDI+IS E A  QA++ GH+   E+  L VHGLLHLLG+DH
Sbjct:   38 QGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETP-RMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDH 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1465_LISMO (Putative metalloprotease lmo1465 OS=Listeria monocytogenes GN=lmo1465 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP------------ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +  ELS+ F  NE IR++N+E+RD+D ATDV+S +                +L+ P  MLGDI+IS E A  QA++ GH+   E+  L VHGLLHLLG+DH
Sbjct:   38 QGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETP-RMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDH 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1105_LISMH (Putative metalloprotease LMHCC_1105 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=LMHCC_1105 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.478e-15
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP------------ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +  ELS+ F  NE IR++N+E+RD+D ATDV+S +                +L+ P  MLGDI+IS E A  QA++ GH+   E+  L VHGLLHLLG+DH
Sbjct:   38 QGTELSLTFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETP-RMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDH 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3029_BACCN (Putative metalloprotease Bcer98_3029 OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=Bcer98_3029 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.930e-15
Identity = 47/116 (40.52%), Postives = 74/116 (63.79%), Query Frame = 3
Query:  492 DTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-QHVPELKLPIL------MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            + A +  G  +  ELS+ F +NE IR++N+++R +D  TDV+S + + + E ++ I+      MLGD++IS+     QAEE GHS   E+  L +HG LHLLG+DH ++E+ E EM
Sbjct:   27 EKAAQMEGVEDGTELSVTFVDNERIREINRDYRGKDQPTDVISFALEDMGEGEVEIIGADMPRMLGDLIISIPRTKEQAEEYGHSFDRELGFLALHGFLHLLGYDH-MTEEDEKEM 141          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y972_THETN (Putative metalloprotease TTE0972 OS=Thermoanaerobacter tengcongensis GN=TTE0972 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS----QHVPELKLP------ILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEK 803
            + +E+S+ F +NE IRKLNK +R  D +TDVLS      + + E +        I  +GDIVIS+E A  QAEE GHS   E+  L VH +LHLLG+DHE  E+
Sbjct:   36 DEVEVSVSFVDNEEIRKLNKYYRGIDSSTDVLSFPLMEFEEIEEGEEDEKDAEEIYPIGDIVISLEKAKEQAEEYGHSFEREVAYLTVHSMLHLLGYDHETEEE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2711_ANADF (Putative metalloprotease Anae109_2711 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2711 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  483 KTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHE 791
            +TR  A     G    E+SIL   +  IR LN+EWR +D ATDVLS     P    P+L  GD+VIS++TAAR+A +   ++  E+   + HGLLHLLG+DHE
Sbjct:   20 RTRAAAYLAALGRADAEISILLVGDRRIRALNREWRGKDAATDVLSFPLSEPPGSGPLL--GDVVISLDTAARRARQERRAVGAELDRYLAHGLLHLLGYDHE 120          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2313_SYNPX (Putative metalloprotease SYNW2313 OS=Synechococcus sp. (strain WH8102) GN=SYNW2313 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 46/100 (46.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS--QHVPELK-LPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEA 812
            + + L + F ++  I  LN  WR  + ATDVLS +  +  P L  +  + LGDIVIS++TA RQA E GH+L  E+R L+ HGLLHLLG+DH   E   A
Sbjct:   54 DEVSLGLRFTDDATITALNSTWRQRNQATDVLSFAALEEAPGLPDVSCVELGDIVISLDTARRQASEHGHNLTRELRWLVSHGLLHLLGWDHPDEESLVA 153          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2264_BACP2 (Putative metalloprotease BPUM_2264 OS=Bacillus pumilus (strain SAFR-032) GN=BPUM_2264 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-QHVPELKLPIL-------MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +  E+S+   +NE I ++NKE+R +D  TDV+S + +   E ++ I+       +LGDI+ISV+    QAEE GHS + E+  L +HG LHLLGFDH ++E+ E EM
Sbjct:   37 DQAEVSVTIVSNEEIHQINKEYRGKDAPTDVISFALEEEGEGEIEIIGADDIPPVLGDIIISVDRTKEQAEEYGHSFMRELGFLTIHGFLHLLGFDH-MTEEDEKEM 142          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y2719_ANADE1.478e-1547.47Putative metalloprotease Adeh_2719 OS=Anaeromyxoba... [more]
Y1484_LISMF1.478e-1545.54Putative metalloprotease LMOf2365_1484 OS=Listeria... [more]
Y1475_LISMC1.478e-1545.54Putative metalloprotease Lm4b_01475 OS=Listeria mo... [more]
Y1465_LISMO1.478e-1545.54Putative metalloprotease lmo1465 OS=Listeria monoc... [more]
Y1105_LISMH1.478e-1545.54Putative metalloprotease LMHCC_1105 OS=Listeria mo... [more]
Y3029_BACCN1.930e-1540.52Putative metalloprotease Bcer98_3029 OS=Bacillus c... [more]
Y972_THETN2.520e-1546.15Putative metalloprotease TTE0972 OS=Thermoanaeroba... [more]
Y2711_ANADF2.520e-1545.63Putative metalloprotease Anae109_2711 OS=Anaeromyx... [more]
Y2313_SYNPX2.520e-1546.00Putative metalloprotease SYNW2313 OS=Synechococcus... [more]
Y2264_BACP22.520e-1542.99Putative metalloprotease BPUM_2264 OS=Bacillus pum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
back to top