FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y590_PSYCK (Putative metalloprotease Pcryo_0590 OS=Psychrobacter cryohalolentis (strain K5) GN=Pcryo_0590 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  567 RKLNKEWRDEDHATDVLSMSQHVPEL---KLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            R+LN E R +D+AT++LS    +P      +P L LG+++I      R+A E+    +  I  L++HG+LHLLGFDHE+ +  + EM
Sbjct:   51 RELNLEARQKDYATNILSYPSDLPAAIIGLMPTLPLGELIICHAVMIREAAEQNKEAVQHISHLLIHGVLHLLGFDHELGQAEQDEM 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3584_CHLSY (Putative metalloprotease Chy400_3584 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=Chy400_3584 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            E  E+ I    ++ + +LN+++R  D  TDVLS +    + +  +       LGDI IS +    QA E GHS   E+  L VHG+LHLLG+DHE      A M
Sbjct:   35 EGCEVGIRITTDDELHRLNRDFRGVDAPTDVLSFADDGHDSRFVVAPDQPRYLGDIAISYQRVLAQAAEYGHSPARELAYLTVHGVLHLLGYDHEQGPAEAARM 138          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3518_MYCSK (Putative metalloprotease Mkms_3518 OS=Mycobacterium sp. (strain KMS) GN=Mkms_3518 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  501 VEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHV------PELKLP-ILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +E +    + ELS++  +   +  L+  W D    TDV+S           P+   P   MLGDIV+  E AA+QAE  GHSL  E+ +L VHG+LHLLG+DH
Sbjct:   26 IEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGVLHLLGYDH 128          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3466_MYCSJ (Putative metalloprotease Mjls_3466 OS=Mycobacterium sp. (strain JLS) GN=Mjls_3466 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  501 VEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHV------PELKLP-ILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +E +    + ELS++  +   +  L+  W D    TDV+S           P+   P   MLGDIV+  E AA+QAE  GHSL  E+ +L VHG+LHLLG+DH
Sbjct:   26 IEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGVLHLLGYDH 128          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3455_MYCSS (Putative metalloprotease Mmcs_3455 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_3455 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 3
Query:  501 VEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHV------PELKLP-ILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +E +    + ELS++  +   +  L+  W D    TDV+S           P+   P   MLGDIV+  E AA+QAE  GHSL  E+ +L VHG+LHLLG+DH
Sbjct:   26 IEKMNVNPAAELSMVLLDTSSMADLHMRWMDLPGPTDVMSFPMDELEPGGRPDAPEPGPAMLGDIVLCPEFAAKQAETAGHSLGHELALLTVHGVLHLLGYDH 128          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3323_CHLAA (Putative metalloprotease Caur_3323 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=Caur_3323 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            E  E+ I    ++ + +LN+++R  D  TDVLS +    + +  +       LGDI IS +    QA E GHS   E+  L VHG+LHLLG+DHE      A M
Sbjct:   35 EGCEVGIRITTDDELHRLNRDFRGVDAPTDVLSFADDGHDSRFVVAPDQPRYLGDIAISYQRVLAQAAEYGHSPARELAYLTVHGVLHLLGYDHEQGPAEAARM 138          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1126_PSEA7 (Putative metalloprotease PSPA7_1126 OS=Pseudomonas aeruginosa (strain PA7) GN=PSPA7_1126 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.390e-11
Identity = 41/95 (43.16%), Postives = 56/95 (58.95%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAE 815
            EL+I   +     +LN  +R +D+AT+VLS    VPE  L I +LGD+VI     AR+A E+   L      L++HG LHLLG+DH   + AEAE
Sbjct:   37 ELTIRLVDEAEGLELNSTYRHKDYATNVLSFPADVPEEFLDIPLLGDLVICAPVVAREAREQHKPLQAHWAHLVIHGCLHLLGYDH--IDDAEAE 129          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y590_PSYCK8.390e-1139.08Putative metalloprotease Pcryo_0590 OS=Psychrobact... [more]
Y3584_CHLSY8.390e-1137.50Putative metalloprotease Chy400_3584 OS=Chloroflex... [more]
Y3518_MYCSK8.390e-1139.81Putative metalloprotease Mkms_3518 OS=Mycobacteriu... [more]
Y3466_MYCSJ8.390e-1139.81Putative metalloprotease Mjls_3466 OS=Mycobacteriu... [more]
Y3455_MYCSS8.390e-1139.81Putative metalloprotease Mmcs_3455 OS=Mycobacteriu... [more]
Y3323_CHLAA8.390e-1137.50Putative metalloprotease Caur_3323 OS=Chloroflexus... [more]
Y1126_PSEA78.390e-1143.16Putative metalloprotease PSPA7_1126 OS=Pseudomonas... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
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