FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12412 contig Ccv1_Contig12412:102..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1480_LISW6 (Putative metalloprotease lwe1480 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=lwe1480 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 46/101 (45.54%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP------------ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            E  ELS+ F  NE IR++N+E+R++D ATDV+S +                +L+ P  MLGDI+IS E A  QA++ GH+   E+  L VHGLLHLLG+DH
Sbjct:   38 EGTELSLTFTTNEGIREINREYRNKDQATDVISFALEEMGEGETEIDWADFDLETP-KMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDH 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1265_SULNB (Putative metalloprotease SUN_1265 OS=Sulfurovum sp. (strain NBC37-1) GN=SUN_1265 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.520e-15
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPI--LMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISE 800
            E+ ++  +NE I++LN+E+RD D+ TDVLS     P  +  +  + LG IVIS +    +A+  GH+  DE+++L +HGLLHLLG+DHE  E
Sbjct:   31 EIELIITDNENIQELNREYRDRDNPTDVLSFPLETPFTEQSVFDIPLGTIVISADFVRERAKTYGHTEQDELKLLFIHGLLHLLGYDHETDE 122          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2246_SYNR3 (Putative metalloprotease SynRCC307_2246 OS=Synechococcus sp. (strain RCC307) GN=SynRCC307_2246 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 47/93 (50.54%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS--QHVPELK--LPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            ++  L + FC++  I +LN +WR +   TDVLS +  +  PE    LPI  LGDIVIS+ TA RQA E GHSL  E+  L  HGLLHLLG+DH
Sbjct:   46 DAYSLGLQFCDDAAIAELNGQWRQQPKPTDVLSFAAQEDAPEPLEGLPI-ELGDIVISIPTAERQAPEHGHSLQQELLFLASHGLLHLLGWDH 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1367_THEP3 (Putative metalloprotease Teth39_1367 OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=Teth39_1367 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  462 SLKDSTYKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-----------QHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEK 803
            +L++   K   T +E     +++E+S+ F +NE IRKLNK +R  D  TDVLS             + + E    +  +GDIVIS+E A  Q+ E GHS   E+  L  H +LHLLG+DHE  E+
Sbjct:   16 NLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEDTYGEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHETEEE 140          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1342_THEPX (Putative metalloprotease Teth514_1342 OS=Thermoanaerobacter sp. (strain X514) GN=Teth514_1342 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 3
Query:  462 SLKDSTYKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-----------QHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEK 803
            +L++   K   T +E     +++E+S+ F +NE IRKLNK +R  D  TDVLS             + + E    +  +GDIVIS+E A  Q+ E GHS   E+  L  H +LHLLG+DHE  E+
Sbjct:   16 NLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVLSFPLAEFEDTYGEVEEIEEDSEEVQPIGDIVISLEKALEQSMEYGHSFEREVAYLTAHSMLHLLGYDHETEEE 140          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1057_BEII9 (Putative metalloprotease Bind_1057 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=Bind_1057 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.299e-15
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSM--SQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            E+S+LFC++ FIR LN +WR  D  T+VLS    + + + +L    LGDI+I+ ET+A +A+    SL   +  L+VHG LHL+G+DHE +E+AE
Sbjct:   51 EVSLLFCDDAFIRGLNHQWRGLDKPTNVLSFPSDEDLEDARL----LGDIIIAFETSAGEAKAEAKSLAAHVSHLVVHGFLHLIGYDHEEAEEAE 141          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y8505_ERYLH (Putative metalloprotease ELI_08505 OS=Erythrobacter litoralis (strain HTCC2594) GN=ELI_08505 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 51/117 (43.59%), Postives = 66/117 (56.41%), Query Frame = 3
Query:  486 TRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQ------HVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            TRD  VE       +E S+LF ++E +  LN+EWR+ D  T+VLS            E + P  MLGDI ++ ET AR+AEE+G SL      L+VHGLLHL G DH  S+    EM
Sbjct:   26 TRD--VEPALAHARLETSVLFTSDEQVHVLNREWRERDKPTNVLSFPMLDRDRLRALEPEGPPEMLGDIALAYETCAREAEEKGISLEAHATHLIVHGLLHLAGHDHVDSDAQAEEM 140          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2215_BRUMB (Putative metalloprotease BMEA_A2215 OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=BMEA_A2215 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDIVI+ ET  R+A+E G  + + +  L+VHG LHLLG+DHE  E+AE
Sbjct:   46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2198_BRUC2 (Putative metalloprotease BCAN_A2198 OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=BCAN_A2198 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDIVI+ ET  R+A+E G  + + +  L+VHG LHLLG+DHE  E+AE
Sbjct:   46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2156_BRUSU (Putative metalloprotease BR2156 OS=Brucella suis GN=BR2156 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDIVI+ ET  R+A+E G  + + +  L+VHG LHLLG+DHE  E+AE
Sbjct:   46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAE 139          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y1480_LISW62.520e-1545.54Putative metalloprotease lwe1480 OS=Listeria welsh... [more]
Y1265_SULNB2.520e-1543.48Putative metalloprotease SUN_1265 OS=Sulfurovum sp... [more]
Y2246_SYNR34.299e-1550.54Putative metalloprotease SynRCC307_2246 OS=Synecho... [more]
Y1367_THEP34.299e-1538.40Putative metalloprotease Teth39_1367 OS=Thermoanae... [more]
Y1342_THEPX4.299e-1538.40Putative metalloprotease Teth514_1342 OS=Thermoana... [more]
Y1057_BEII94.299e-1545.26Putative metalloprotease Bind_1057 OS=Beijerinckia... [more]
Y8505_ERYLH5.615e-1543.59Putative metalloprotease ELI_08505 OS=Erythrobacte... [more]
Y2215_BRUMB5.615e-1547.87Putative metalloprotease BMEA_A2215 OS=Brucella me... [more]
Y2198_BRUC25.615e-1547.87Putative metalloprotease BCAN_A2198 OS=Brucella ca... [more]
Y2156_BRUSU5.615e-1547.87Putative metalloprotease BR2156 OS=Brucella suis G... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
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