FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12412 contig Ccv1_Contig12412:102..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2156_BRUA2 (Putative metalloprotease BAB1_2156 OS=Brucella abortus (strain 2308) GN=BAB1_2156 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDIVI+ ET  R+A+E G  + + +  L+VHG LHLLG+DHE  E+AE
Sbjct:   46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2129_BRUAB (Putative metalloprotease BruAb1_2129 OS=Brucella abortus GN=BruAb1_2129 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDIVI+ ET  R+A+E G  + + +  L+VHG LHLLG+DHE  E+AE
Sbjct:   46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1993_BRUSI (Putative metalloprotease BSUIS_A1993 OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=BSUIS_A1993 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDIVI+ ET  R+A+E G  + + +  L+VHG LHLLG+DHE  E+AE
Sbjct:   46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1974_BRUME (Putative metalloprotease BMEI1974 OS=Brucella melitensis GN=BMEI1974 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDIVI+ ET  R+A+E G  + + +  L+VHG LHLLG+DHE  E+AE
Sbjct:   46 ELSVVFTDDASIQLLNGEWRGKDKPTNVLSFPAFPVKAGSQPGPMLGDIVIARETVEREAKEEGKPIENHLSHLVVHGFLHLLGYDHETDEEAE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1839_CALS8 (Putative metalloprotease Csac_1839 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=Csac_1839 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 50/120 (41.67%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH------------VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            ++DS   T    ++D    E+ E+S++  +N+FI++LNK +R  D  TDVLS                + E ++P   LGDIVIS+E A  QA+E GHS+  EI  L VH +LHLLGFDH
Sbjct:   22 IEDSVLNTLKIFMDD----ENYEISVMIVDNQFIKELNKHYRSIDKETDVLSFPIFEFKNGELQEDIAIVEEEIP---LGDIVISIEKAYEQAKEFGHSVEREIAYLTVHSVLHLLGFDH 134          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1274_ANATD (Putative metalloprotease Athe_1274 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=Athe_1274 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 48/100 (48.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILM-----------LGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            E+ E+S+L  +N FI++LN+ +R+ +  TDVLS    + E K   L+           LGDIVIS+E AA+QA+E GHSL  EI  L VH +LHLLGFDH
Sbjct:   37 ENFEISVLIVDNSFIKELNRNYRNVNKETDVLSFP--IFEFKNGKLLEDIVIMEDEIPLGDIVISIEKAAQQAKEFGHSLEREIAYLTVHSVLHLLGFDH 134          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1192_STACT (Putative metalloprotease Sca_1192 OS=Staphylococcus carnosus (strain TM300) GN=Sca_1192 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.615e-15
Identity = 46/118 (38.98%), Postives = 71/118 (60.17%), Query Frame = 3
Query:  477 TYKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            T+  ++  +ED       ELS+ F N + I+++N+++R++D  TDV+S +    E  +  L    +LGDI+I  + A  QAEE GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   26 TFAKKEEKIED-----DAELSVTFVNKQEIQEINRDYRNKDKVTDVISFALEEDEPDIEGLDMPRVLGDIIICADVAKEQAEEYGHSFERELGFLALHGFLHLLGYDH-MNEADEKEM 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y736_LACRD (Putative metalloprotease Lreu_0736 OS=Lactobacillus reuteri (strain DSM 20016) GN=Lreu_0736 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  498 AVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILM-----------LGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAE 815
            A +++   E+ E+S+ F NN  I+KLN ++R+ D ATDVLS +      + PI+M           LGD+ IS++  A QA+  GHS+  E+  L VHG LHL G+DHE  E A+ E
Sbjct:   28 AAKELSLSENTEMSLTFVNNPEIKKLNAQYRNVDRATDVLSFAAEEAGDETPIIMDPEMAAEIPVNLGDLFISIDKVAEQAKFLGHSVDRELGFLAVHGFLHLNGYDHE--EPADEE 142          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y707_LACRJ (Putative metalloprotease LAR_0707 OS=Lactobacillus reuteri (strain JCM 1112) GN=LAR_0707 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 48/117 (41.03%), Postives = 69/117 (58.97%), Query Frame = 3
Query:  498 AVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILM-----------LGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAE 815
            A +++   E+ E+S+ F NN  I+KLN ++R+ D ATDVLS +      + PI+M           LGD+ IS++  A QA+  GHS+  E+  L VHG LHL G+DHE  E A+ E
Sbjct:   28 AAKELSLSENTEMSLTFVNNPEIKKLNAQYRNVDRATDVLSFAAEEAGDETPIIMDPEMAAEIPVNLGDLFISIDKVAEQAKFLGHSVDRELGFLAVHGFLHLNGYDHE--EPADEE 142          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2362_BACA2 (Putative metalloprotease RBAM_023620 OS=Bacillus amyloliquefaciens (strain FZB42) GN=RBAM_023620 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 45/111 (40.54%), Postives = 67/111 (60.36%), Query Frame = 3
Query:  498 AVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMS-QHVPELKLPIL------MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            A E  G  +  E+S+    NE IR++N+++R +D  TDV+S + +   E ++ I+      +LGDI+IS +    QAEE GHS + E+  L VHG LHLLG+DH   E+ E
Sbjct:   29 AAEKEGVQDQAEVSVTIVTNEEIREINRDYRGKDTPTDVISFALEEEGEDEVEIVGADMPPVLGDIIISADRTKEQAEEYGHSFMRELGFLAVHGFLHLLGYDHMTKEEEE 139          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y2156_BRUA25.615e-1547.87Putative metalloprotease BAB1_2156 OS=Brucella abo... [more]
Y2129_BRUAB5.615e-1547.87Putative metalloprotease BruAb1_2129 OS=Brucella a... [more]
Y1993_BRUSI5.615e-1547.87Putative metalloprotease BSUIS_A1993 OS=Brucella s... [more]
Y1974_BRUME5.615e-1547.87Putative metalloprotease BMEI1974 OS=Brucella meli... [more]
Y1839_CALS85.615e-1541.67Putative metalloprotease Csac_1839 OS=Caldicellulo... [more]
Y1274_ANATD5.615e-1548.00Putative metalloprotease Athe_1274 OS=Anaerocellum... [more]
Y1192_STACT5.615e-1538.98Putative metalloprotease Sca_1192 OS=Staphylococcu... [more]
Y736_LACRD7.333e-1541.03Putative metalloprotease Lreu_0736 OS=Lactobacillu... [more]
Y707_LACRJ7.333e-1541.03Putative metalloprotease LAR_0707 OS=Lactobacillus... [more]
Y2362_BACA27.333e-1540.54Putative metalloprotease RBAM_023620 OS=Bacillus a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
back to top