FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12412 contig Ccv1_Contig12412:102..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1502_LISIN (Putative metalloprotease lin1502 OS=Listeria innocua GN=lin1502 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 45/101 (44.55%), Postives = 63/101 (62.38%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP------------ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            E  ELS+ F  NE I+++N+E+R++D ATDV+S +                +L+ P  MLGDI+IS E A  QA++ GH+   E+  L VHGLLHLLG+DH
Sbjct:   38 EGTELSLTFTTNEGIQEINREYRNKDQATDVISFALEEMGDGETEIDWGDFDLETP-RMLGDIIISTEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDH 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1248_ALKOO (Putative metalloprotease Clos_1248 OS=Alkaliphilus oremlandii (strain OhILAs) GN=Clos_1248 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.333e-15
Identity = 54/138 (39.13%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  444 MKLAFDSLKDSTYKTRDTAVEDVG----------GFE-SIELSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            M+L  D+ +D  Y+  D  +E +           G+E   E+S+ F +N+ I+ LN  +R +D+ATDVLS  + +    L L   +LGDIVISVE AA QA+E  HS   E+  L+VH + HL+G+DH+  ++A A+M
Sbjct:    1 MELLIDNRQDR-YEITDALIELINKAVEACLIYEGWEIDYEVSLSFVDNQEIQALNHTYRGKDYATDVLSFPLIEENQGLDLEEKLLGDIVISVEKAAEQAKEYNHSFEREMGFLVVHSMFHLMGYDHD-HDEATADM 136          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y892_PELTS (Putative metalloprotease PTH_0892 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=PTH_0892 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPI------LMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEK 803
            E  E+S++F ++ +I  LN+++R  D  TDVLS +    E   P+      L+LGD+VIS++ A RQA E GHSL  E   L VHG+LHLLG+DH+  E+
Sbjct:   37 EEAEVSLVFVDDAYIHGLNRQYRGVDAPTDVLSFAMQEGE---PLAGGEEELILGDVVISLQAAERQAGEYGHSLQREAAYLAVHGVLHLLGYDHQGEEE 133          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2370_GEOMG (Putative metalloprotease Gmet_2370 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=Gmet_2370 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  516 GFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPEL-KLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEA 812
            G+   ELS++   +  IR++N+E+  +D  T+V+S +    E   L   MLGD++IS +TAAR+AEE G S    +  L++HG+LH+ G+DHE S +AEA
Sbjct:   31 GYPDSELSVVITGDLGIRRVNREYLHKDRPTNVISFAMAEGEFGALNPAMLGDVIISADTAAREAEEGGVSFWSRLCFLLLHGILHITGYDHERSGEAEA 130          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1764_SYNP2 (Putative metalloprotease SYNPCC7002_A1764 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A1764 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.578e-15
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPI-----LMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            +  EL++ F  +  I  LN ++R +D  TDVLS +        P+     L LGDI++SVETA RQA+ER HSL  E+  L+ HGLLHLLG+DH
Sbjct:   46 DGYELTLRFTTDAEIHNLNHQYRHKDQPTDVLSFAALEDNFASPLPPGEPLYLGDIIVSVETAQRQAQERQHSLQTELGWLVSHGLLHLLGWDH 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y4736_MYXXD (Putative metalloprotease MXAN_4736 OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_4736 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 43/89 (48.31%), Postives = 60/89 (67.42%), Query Frame = 3
Query:  528 IELSILFCNNEFIRKLNKEWRDEDHATDVLSM-SQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHE 791
            +ELS+   ++  IR+LN+ WR +D ATDVLS  +  +P+       LGD+VIS++TA RQA+E G +L  E+   + HGLLHLLG DHE
Sbjct:  167 VELSLSLVDDRAIRRLNRTWRKKDKATDVLSFPAGDLPKGTPGPRPLGDVVISLDTAKRQAKEYGRTLESEMARYLAHGLLHLLGHDHE 255          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y4465_MAGSA (Putative metalloprotease amb4465 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=amb4465 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 41/101 (40.59%), Postives = 67/101 (66.34%), Query Frame = 3
Query:  528 IELSILFCNNEFIRKLNKEWRDEDHATDVLSMS----QHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +ELSI+  ++  ++ LN++WR +D  T+VLS +    +  P +    L+LGD++++ ET A +A ++G +L D    L+VHG+LHLLG+DH   E+A AEM
Sbjct:   45 VELSIVLADDATVQGLNRDWRGKDQPTNVLSFASLDDEDAPVVPGAPLLLGDVILAFETCAAEAHDQGKTLADHFSHLVVHGVLHLLGYDHMDDEEA-AEM 144          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1921_RENSM (Putative metalloprotease RSal33209_1921 OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=RSal33209_1921 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.634e-14
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELK-------LPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            ELSI+  + E + KL+ EW  E  ATDVLS    + EL+        P  +LGDIVI  + A  QA+  GHS+ DE+ +L  HGLLHLLG+DHE  E+ +AEM
Sbjct:   36 ELSIILADREAMEKLHVEWMYEPGATDVLSFP--MDELRPGTVSRPAPAGLLGDIVICPQVAQEQAQAGGHSVEDELLLLTTHGLLHLLGYDHEDPEE-KAEM 135          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y756_OCHA4 (Putative metalloprotease Oant_0756 OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=Oant_0756 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 44/94 (46.81%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ELS++F ++  I+ LN EWR +D  T+VLS     V     P  MLGDI+I+ ET  R+A E G  L + +  L+VHG LHLLG+DHE   +AE
Sbjct:   46 ELSVVFTDDASIQTLNAEWRGKDKPTNVLSFPAFPVKAGAQPGPMLGDIIIARETVEREAREEGKPLENHLAHLVVHGFLHLLGYDHETDAEAE 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y414_RHIE6 (Putative metalloprotease RHECIAT_CH0000414 OS=Rhizobium etli (strain CIAT 652) GN=RHECIAT_CH0000414 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            E+S++F ++  I+ +N EWR +D AT+VLS     V   K+P  MLGDI+I+ ET  R+A E   S  D +  L+VHG LHLLG+DH  S +AE
Sbjct:   50 EVSLVFTDDASIQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETVEREAHELEKSFDDHLTHLLVHGFLHLLGYDHMNSAEAE 143          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y1502_LISIN7.333e-1544.55Putative metalloprotease lin1502 OS=Listeria innoc... [more]
Y1248_ALKOO7.333e-1539.13Putative metalloprotease Clos_1248 OS=Alkaliphilus... [more]
Y892_PELTS9.578e-1545.00Putative metalloprotease PTH_0892 OS=Pelotomaculum... [more]
Y2370_GEOMG9.578e-1542.00Putative metalloprotease Gmet_2370 OS=Geobacter me... [more]
Y1764_SYNP29.578e-1546.81Putative metalloprotease SYNPCC7002_A1764 OS=Synec... [more]
Y4736_MYXXD1.634e-1448.31Putative metalloprotease MXAN_4736 OS=Myxococcus x... [more]
Y4465_MAGSA1.634e-1440.59Putative metalloprotease amb4465 OS=Magnetospirill... [more]
Y1921_RENSM1.634e-1447.57Putative metalloprotease RSal33209_1921 OS=Renibac... [more]
Y756_OCHA42.134e-1446.81Putative metalloprotease Oant_0756 OS=Ochrobactrum... [more]
Y414_RHIE62.134e-1446.81Putative metalloprotease RHECIAT_CH0000414 OS=Rhiz... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
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