FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y393_RHIL3 (Putative metalloprotease RL0393 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=RL0393 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 57/156 (36.54%), Postives = 84/156 (53.85%), Query Frame = 3
Query:  348 ELNVSICIED-ELPDDPEVLNIAEMLRLNAPTLMKLAFDSLKDSTYKTRDTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            EL++ I +ED   P +  +L+  E +       +  A   L+DS  +   T   +V        S++F ++  I+ +N EWR +D AT+VLS     V   K+P  MLGDI+I+ ET  R+A E   S  D +  L+VHG LHLLG+DH  S +AE
Sbjct:    3 ELDIQISVEDIGWPGEETLLSFCERV-------LGAAAVYLRDSEKQPFPTMAPEV--------SLVFTDDASIQDINAEWRGKDKATNVLSFPAFPVQPGKMPGPMLGDIIIARETLEREAAELEKSFDDHLTHLLVHGFLHLLGYDHMNSAEAE 143          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3763_PSEU5 (Putative metalloprotease PST_3763 OS=Pseudomonas stutzeri (strain A1501) GN=PST_3763 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAE 815
            EL+I   + E  R+LN+ WR +D+AT+VLS    VP+  L I +LGD+VI V    R+A E+G +L      L++HG LHLLG+DH   E AEAE
Sbjct:   36 ELTIRLVDEEEGRELNRTWRQKDYATNVLSFPADVPDEFLDIPLLGDLVICVPVVEREAAEQGKTLDAHWAHLVIHGCLHLLGYDH--IEDAEAE 128          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y3574_COLP3 (Putative metalloprotease CPS_3574 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=CPS_3574 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 44/111 (39.64%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  492 DTAVEDVGGF--ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            DTA+ +V     +  EL+I   NNE  ++LNK++RD+D  T+VLS    VP+  + + +LGD++I +E   ++A+E+  +L +    L++HG LHL+GFDH IS+    EM
Sbjct:   27 DTALAEVSSSPNQDFELTIRLVNNEESQQLNKQYRDKDKPTNVLSFPFEVPD-GIELNLLGDLIICIEVMKQEAQEQNKALFEHWAHLVIHGCLHLVGFDH-ISDTEALEM 135          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y248_BART1 (Putative metalloprotease BT_0248 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=BT_0248 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.134e-14
Identity = 45/117 (38.46%), Postives = 74/117 (63.25%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESI--ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH-VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKA 806
            L + T K   TA+  V   E++  E+S+LF ++E + K+N +WR ++ +T+VLS     +     P  MLGDI+I+ ET   +AE++G +  D +  ++VHG+LHLLG+DHE  ++A
Sbjct:   19 LYNITEKALTTAMHHVS-LENVVSEISLLFTDDEHMAKINAQWRGKNKSTNVLSFPAFPIKAGNPPGPMLGDIIIARETVVLEAEKQGKTFQDHLTHMIVHGILHLLGYDHETDDEA 134          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y987_OENOB (Putative metalloprotease OEOE_0987 OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=OEOE_0987 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 45/102 (44.12%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPE---LKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            ++ E+S+ F N+E I ++NKE+R+ D ATDV+S +    +   +      LGD+ IS++ A  QAEE  HS   E+  L VHG LHLLG+DH  S+ AE EM
Sbjct:   37 QNYEMSVNFVNDEKIHQINKEYRNTDRATDVISFALEESDRIHIDGVAEELGDLFISLDHAHAQAEEYLHSYNRELAYLAVHGFLHLLGYDHTRSQAAEDEM 138          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y5406_PSEFS (Putative metalloprotease PFLU_5406 OS=Pseudomonas fluorescens (strain SBW25) GN=PFLU_5406 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.787e-14
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            EL+I   +    R+LN  WR +D+AT+VLS    VP+  L I +LGD+VI VE   R+A+E+G  L      L++HG LHLLG+DH   ++AE
Sbjct:   36 ELTIRLVDEPEGRELNHTWRQKDYATNVLSFPADVPDELLDIPLLGDLVICVEVVEREAKEQGKELEAHWAHLVIHGCLHLLGYDHIDDDEAE 128          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y683_THET2 (Putative metalloprotease TT_C0683 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C0683 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  534 LSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ++++   +  +R L +EW  ED ATDVLS   + P        LGDI IS++TA RQAE RG SL +E+ +L  HGL HLLG DH+  E  E
Sbjct:   36 VTVILTGDRRLRALKREWWGEDEATDVLSFPHYEPGDPFVPPHLGDIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDHQKEEDWE 127          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y5536_RHILO (Putative metalloprotease mlr5536 OS=Rhizobium loti GN=mlr5536 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 46/108 (42.59%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  492 DTAVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPIL-MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEA 812
            D A  + G     ELS++F ++  IR LN EWR +D  T+VLS          P+  MLGDIV++ ET +R+A      + + I  L++HGLLHLLG DHE   +AEA
Sbjct:   40 DAAFAETGVTGRSELSVVFSDDAHIRTLNAEWRGKDKPTNVLSFPAFPFAQGGPLPPMLGDIVLAAETVSREAALEDKPVQNHITHLVIHGLLHLLGHDHETDAEAEA 147          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2424_GEOSW (Putative metalloprotease GWCH70_2424 OS=Geobacillus sp. (strain WCH70) GN=GWCH70_2424 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 42/99 (42.42%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQH--------VPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEK 803
            E+ I F +NE IR +N+++R +D  TDV+S +          + +  +P L LGDI+IS+  A  QA+E GHS + E+  L VHG LHLLG+DH+  E+
Sbjct:   40 EVGISFVDNERIRIINRDYRGKDQPTDVISFALEEKGEGEVEIVDADIPPL-LGDIIISIPKAKEQAKEYGHSFMRELGFLAVHGFLHLLGYDHKTEEE 137          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1900_SYNJB (Putative metalloprotease CYB_1900 OS=Synechococcus sp. GN=CYB_1900 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 46/104 (44.23%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  501 VEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLP--------ILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDH 788
            ++++G  E  ELS+   ++E IR+LN+E+R  D  TDVL+ +    E+  P        + +LGDIVISV TA  QA+ +GH L  E+  L  HGLLHLLG+DH
Sbjct:   30 LKELGVQEPCELSLCLTSDEHIRQLNREFRHLDEPTDVLAFAAQ--EMLAPFGIQDITGVRLLGDIVISVPTARAQAKAQGHRLSQELAWLASHGLLHLLGWDH 131          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y393_RHIL32.134e-1436.54Putative metalloprotease RL0393 OS=Rhizobium legum... [more]
Y3763_PSEU52.134e-1447.37Putative metalloprotease PST_3763 OS=Pseudomonas s... [more]
Y3574_COLP32.134e-1439.64Putative metalloprotease CPS_3574 OS=Colwellia psy... [more]
Y248_BART12.134e-1438.46Putative metalloprotease BT_0248 OS=Bartonella tri... [more]
Y987_OENOB2.787e-1444.12Putative metalloprotease OEOE_0987 OS=Oenococcus o... [more]
Y5406_PSEFS2.787e-1445.16Putative metalloprotease PFLU_5406 OS=Pseudomonas ... [more]
Y683_THET23.639e-1445.65Putative metalloprotease TT_C0683 OS=Thermus therm... [more]
Y5536_RHILO3.639e-1442.59Putative metalloprotease mlr5536 OS=Rhizobium loti... [more]
Y2424_GEOSW3.639e-1442.42Putative metalloprotease GWCH70_2424 OS=Geobacillu... [more]
Y1900_SYNJB3.639e-1444.23Putative metalloprotease CYB_1900 OS=Synechococcus... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
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