FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12412 contig Ccv1_Contig12412:102..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1245_BARBK (Putative metalloprotease BARBAKC583_1245 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=BARBAKC583_1245 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 41/93 (44.09%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPEL-KLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKA 806
            ELS+LF NN  + ++N +WR+++  T+VLS      +  + P  MLGDIV++ ET   +AEE G S  D +  ++VHG+LHLLG+DHE  ++A
Sbjct:   42 ELSLLFTNNMRMAQINTQWRNKNKPTNVLSFPAFPLKAGQNPGPMLGDIVLARETIVYEAEEEGKSFHDHLTHMIVHGILHLLGYDHETDDEA 134          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1045_THET8 (Putative metalloprotease TTHA1045 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA1045 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.639e-14
Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  534 LSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            ++++   +  +R L +EW  ED ATDVLS   + P        LGDI IS++TA RQAE RG SL +E+ +L  HGL HLLG DH+  E  E
Sbjct:   36 VTVILTGDRRLRALKREWWGEDEATDVLSFPHYEPGDPFVPPHLGDIWISLDTARRQAEARGASLEEEVLVLAAHGLWHLLGHDHQKEEDWE 127          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y881_ARCB4 (Putative metalloprotease Abu_0881 OS=Arcobacter butzleri (strain RM4018) GN=Abu_0881 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 39/88 (44.32%), Postives = 58/88 (65.91%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEI 794
            ++ ++   N+ I++LNKE+R+ D  TDVLS   +   + +P+L  G IVIS +    +A+E  HS  +E  +L +HGLLHLLGFDHEI
Sbjct:   28 DIELIVVKNDEIQELNKEYRNIDKPTDVLSFPMNFEVIDMPLL--GSIVISTDFVQEKAKEFKHSFNEEFTLLFIHGLLHLLGFDHEI 113          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y822_EXIS2 (Putative metalloprotease Exig_0822 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=Exig_0822 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 44/104 (42.31%), Postives = 64/104 (61.54%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHV---PELKLPIL-----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            ELS+ F  N+ I+++N+EWR +D ATDV+S +       E+   +L     +LGD++ISVE    QA E G+    E+  L VHG LHLLG+DH   EKA+ ++
Sbjct:   38 ELSVTFVTNDEIQQINREWRGKDQATDVISFAMDELGEDEIDFELLEDEPVVLGDLIISVERCREQAAEYGNHFERELGFLAVHGFLHLLGYDH--IEKADEDI 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y212_BARQU (Putative metalloprotease BQ02120 OS=Bartonella quintana GN=BQ02120 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 45/121 (37.19%), Postives = 77/121 (63.64%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESI--ELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVPELKL-----PILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKA 806
            L D T K   T +  +   E++  E+S+LF +++ + ++N +WR+++ +T+VLS     P L L     P LMLGDI+I+ ET   +A++ G S  D +  ++VHG+LHLLG++HE +++A
Sbjct:   19 LYDITEKALKTTMNHLS-LENVVSEISLLFTDDKHMAQINAQWRNKNKSTNVLSF----PALPLKAGDPPGLMLGDIIIAQETVVLEAKKEGKSFQDHLTHMIVHGILHLLGYNHETNDEA 134          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1678_BACSK (Putative metalloprotease ABC1678 OS=Bacillus clausii (strain KSM-K16) GN=ABC1678 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 51/117 (43.59%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  498 AVEDVGGFESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQHVP----------ELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            A ++V   +  E+S+ F   E I +LN+E R  D  TDVLS + +            EL LP L LGDIVISV    RQA + GHS   E+  L+VHG LHLLG+DH ++E+ E +M
Sbjct:   28 AAQEVSLSQQSEVSVTFTTEEDIHELNREHRGIDRPTDVLSFALNDETSDFDPTFHEELGLPNL-LGDIVISVPHVERQAADYGHSFERELAFLVVHGFLHLLGYDH-MNEEEEKQM 142          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1672_STAA8 (Putative metalloprotease SAOUHSC_01672 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_01672 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1662_STAA2 (Putative metalloprotease SaurJH1_1662 OS=Staphylococcus aureus (strain JH1) GN=SaurJH1_1662 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1628_STAA9 (Putative metalloprotease SaurJH9_1628 OS=Staphylococcus aureus (strain JH9) GN=SaurJH9_1628 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1627_STAAC (Putative metalloprotease SACOL1627 OS=Staphylococcus aureus (strain COL) GN=SACOL1627 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y1245_BARBK3.639e-1444.09Putative metalloprotease BARBAKC583_1245 OS=Barton... [more]
Y1045_THET83.639e-1445.65Putative metalloprotease TTHA1045 OS=Thermus therm... [more]
Y881_ARCB44.753e-1444.32Putative metalloprotease Abu_0881 OS=Arcobacter bu... [more]
Y822_EXIS24.753e-1442.31Putative metalloprotease Exig_0822 OS=Exiguobacter... [more]
Y212_BARQU4.753e-1437.19Putative metalloprotease BQ02120 OS=Bartonella qui... [more]
Y1678_BACSK4.753e-1443.59Putative metalloprotease ABC1678 OS=Bacillus claus... [more]
Y1672_STAA84.753e-1438.28Putative metalloprotease SAOUHSC_01672 OS=Staphylo... [more]
Y1662_STAA24.753e-1438.28Putative metalloprotease SaurJH1_1662 OS=Staphyloc... [more]
Y1628_STAA94.753e-1438.28Putative metalloprotease SaurJH9_1628 OS=Staphyloc... [more]
Y1627_STAAC4.753e-1438.28Putative metalloprotease SACOL1627 OS=Staphylococc... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
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