FC878131

Overview
NameFC878131
Unique NameFC878131
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length818
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12412 contig Ccv1_Contig12412:102..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1571_STAAT (Putative metalloprotease USA300HOU_1571 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=USA300HOU_1571 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1570_STAAM (Putative metalloprotease SAV1570 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV1570 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1557_STAA1 (Putative metalloprotease SAHV_1557 OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=SAHV_1557 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1530_STAA3 (Putative metalloprotease SAUSA300_1530 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_1530 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1522_STAAW (Putative metalloprotease MW1522 OS=Staphylococcus aureus (strain MW2) GN=MW1522 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1508_STAAS (Putative metalloprotease SAS1508 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1508 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1473_STAAE (Putative metalloprotease NWMN_1473 OS=Staphylococcus aureus (strain Newman) GN=NWMN_1473 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y1399_STAAN (Putative metalloprotease SA1399 OS=Staphylococcus aureus (strain N315) GN=SA1399 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 49/128 (38.28%), Postives = 74/128 (57.81%), Query Frame = 3
Query:  465 LKDSTYKTRDTAVEDVGGFESIE----LSILFCNNEFIRKLNKEWRDEDHATDVLS--MSQHVPELKLPIL----MLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAEAEM 818
            +KD+ YK  +  +E     E IE    LS+ F + + I+++N+ +RD+D  TDV+S  + +  PE+    L    +LGDI+I  + A  QA   GHS   E+  L +HG LHLLG+DH ++E  E EM
Sbjct:   13 VKDAWYKQIEDLLEFAKKEEHIEDDAELSVTFVDKQEIQEINRTYRDKDKVTDVISFALEEDEPEIDFSGLDIPRVLGDIIICTDVAQEQANNYGHSFERELGFLALHGFLHLLGYDH-MTEADEKEM 139          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y074_ZYMMO (Putative metalloprotease ZMO0074 OS=Zymomonas mobilis GN=ZMO0074 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.753e-14
Identity = 39/100 (39.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  531 ELSILFCNNEFIRKLNKEWRDEDHATDVLSM----SQHVPELKLPI---LMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEKAE 809
            E+S+ F +N+ +  LNK WRD+D  T+VLS     ++ + E+K  +    +LGDI+++ + A ++A E+G SL + +  L+ HG LHLLG+DH +  +AE
Sbjct:   46 EISVCFSDNDTVHALNKTWRDKDRPTNVLSFPMMEAEELAEIKNRVGSECLLGDIILAFDVAKKEALEKGISLENHVTHLITHGTLHLLGYDHILDNEAE 145          
BLAST of FC878131 vs. ExPASy Swiss-Prot
Match: Y2491_GEOKA (Putative metalloprotease GK2491 OS=Geobacillus kaustophilus GN=GK2491 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.208e-14
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  522 ESIELSILFCNNEFIRKLNKEWRDEDHATDVLSMSQ--------HVPELKLPILMLGDIVISVETAARQAEERGHSLLDEIRILMVHGLLHLLGFDHEISEK 803
            +  E+S+ F +NE IR +N+++R +D  TDVLS +         H+    +P + LGDIVIS+  A  QA   GHS + E+  L VHG LHLLG+DH   E+
Sbjct:   37 DGAEVSVTFVDNERIRAMNRDYRGKDAPTDVLSFALEEEGEEEVHIVGADMPPV-LGDIVISIPKAKEQAAAYGHSFMRELGFLAVHGFLHLLGYDHGTEEE 137          
The following BLAST results are available for this feature:
BLAST of FC878131 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
Y1571_STAAT4.753e-1438.28Putative metalloprotease USA300HOU_1571 OS=Staphyl... [more]
Y1570_STAAM4.753e-1438.28Putative metalloprotease SAV1570 OS=Staphylococcus... [more]
Y1557_STAA14.753e-1438.28Putative metalloprotease SAHV_1557 OS=Staphylococc... [more]
Y1530_STAA34.753e-1438.28Putative metalloprotease SAUSA300_1530 OS=Staphylo... [more]
Y1522_STAAW4.753e-1438.28Putative metalloprotease MW1522 OS=Staphylococcus ... [more]
Y1508_STAAS4.753e-1438.28Putative metalloprotease SAS1508 OS=Staphylococcus... [more]
Y1473_STAAE4.753e-1438.28Putative metalloprotease NWMN_1473 OS=Staphylococc... [more]
Y1399_STAAN4.753e-1438.28Putative metalloprotease SA1399 OS=Staphylococcus ... [more]
Y074_ZYMMO4.753e-1439.00Putative metalloprotease ZMO0074 OS=Zymomonas mobi... [more]
Y2491_GEOKA6.208e-1442.16Putative metalloprotease GK2491 OS=Geobacillus kau... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA88DH09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA88DH09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878131 ID=FC878131; Name=FC878131; organism=Citrus clementina; type=EST; length=818bp
CAAAAGATTAAGCCTACATGCTCCCTCGCCTCTCCTCTGTACTCCGCGCT
CTCCCTTCCTCGACCGCTCCAATGGCGCGTATAATTTCACGAGCAACTCC
TCTACCTGTTACCCGTACCTCGTACGCCGCCATTTCCTTCCTCAACTCAC
CTTCGATCTCTTACAAAACGCACCGTTTGGATGCATCTTCTCCATCGAAT
TCGTCGCCGCTATTCGGTCGGGGATTCCGCGTGCTGTGTAGAAGAGAAGA
GGAGAGCGTGGTGCGATCGTCGCGAAAGGTTTTTGCTGAACAGAGAGGGT
ACCGCAAGGCGCGGAGACGAGTGGCGAAGAGCAAGCAGAAGGAATTGGAG
CTCAATGTCAGCATTTGCATCGAAGACGAGCTGCCTGATGATCCCGAAGT
ATTGAATATTGCAGAAATGCTTCGTCTTAATGCACCAACTTTAATGAAGT
TAGCATTTGATAGTTTGAAAGATTCGACATATAAAACAAGAGATACTGCC
GTAGAAGATGTTGGTGGGTTTGAAAGCATTGAGTTGTCTATACTCTTTTG
CAACAATGAGTTCATTCGTAAACTTAACAAAGAATGGAGGGATGAGGACC
ATGCCACTGATGTTCTCTCCATGTCACAACATGTCCCTGAACTCAAACTT
CCAATTCTTATGTTAGGTGACATTGTCATTTCTGTTGAGACTGCTGCAAG
ACAAGCAGAGGAAAGAGGGCACTCACTTCTTGATGAAATACGCATCCTTA
TGGTTCATGGCTTGTTGCATCTTTTGGGTTTCGATCATGAGATTAGCGAA
AAAGCTGAAGCAGAGATG
back to top