FC878133

Overview
NameFC878133
Unique NameFC878133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:94..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATL1_RAT (Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 2.189e-36
Identity = 89/231 (38.53%), Postives = 122/231 (52.81%), Query Frame = 3
Query:  192 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQ----FSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            +K    + Y + EE  RR  +++ N+R          +  HG T     F D+T  EFR+   G R +        Q P++    +P   DWREKG V PVK+QG CGSCW+FS +G LEG  FL TGKL+SLSEQ LVDC H+         + GCNGGLM+ AF+Y  + GGL  EE YPY   D   +CK+      A+   F  +   E  +   +   GP++VA++
Sbjct:   32 WKSTHRRLYGTNEEEWRR-AVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHKKGRLFQEPLML--QIPKTVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHD-------QGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKD--GSCKYRAEYAVANDTGFVDIPQQEKALMKAVATVGPISVAMD 250          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CYSP1_LEIPI (Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.858e-36
Identity = 91/240 (37.92%), Postives = 129/240 (53.75%), Query Frame = 3
Query:  171 AEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVT-QFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPA---DFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            A  H+  FKK+  KA+    E   RF  FK N++ A      +P A + V+ +F+DLTP EF + YL      R  KD  +  +   +  P+     DWR+KGAV PVK+QG CGSCW+FS  G +EG    +   LVSLSEQ LV CD         + D GCNGGLM+ A  + +++  G +  E  YPYT          D+ ++ A +  F  +  DE++IA  + K GP+AVA++
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKDHKE-DVHVDDSAPSGVMSVDWRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVD 267          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: LMCPB_LEIME (Cysteine proteinase B OS=Leishmania mexicana GN=LMCPB PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.733e-36
Identity = 95/239 (39.75%), Postives = 129/239 (53.97%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYL-GLRRKLRLPKDADQAPILPTNDL---PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLK--AGGLMREEDYPYTGTDRGHACKFDKSK---IAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            F  FK+ + +AY +  E  +R   F+ NL      Q  +P A  G+T+F DL+ AEF   YL G        + A Q       DL   P   DWREKGAV PVKDQG+CGSCW+FS  G +EG  +LA  +LVSLSEQQLV CD           + GC+GGLM  AF++ L+   G L  E+ YPY  +  G+  +   S    + A +    ++   E  +AA L KNGP+A+A++
Sbjct:   38 FEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVSCD---------DMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYV-SGNGYVPECSNSSELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALD 266          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 3.733e-36
Identity = 84/221 (38.01%), Postives = 120/221 (54.30%), Query Frame = 3
Query:  210 KAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            K+Y S EE   R+ IFKAN+    +          G+  F+D+T  E+R TYLG +          +  +  T+   A  DWR +GAV PVK+QG CG CWSFSTTG+ EGA+F + G+LVSLSEQ L+DC  E         +SGC+GGLM  AFEY +   G+  E  YPY        C++      A+++++  V+   +    + V   P++VAI+
Sbjct:   39 KSYTS-EEFGARYNIFKANMDYVQQWNSKGSETVLGLNNFADITNEEYRNTYLGTKFDASSLIGTQEEKVFTTSSA-ASKDWRSEGAVTPVKNQGQCGGCWSFSTTGSTEGAHFQSKGELVSLSEQNLIDCSTE---------NSGCDGGLMTYAFEYIINNNGIDTESSYPYKA--ENGKCEYKSENSGATLSSYKTVTAGSESSLESAVNVNPVSVAID 246          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATV_NPVCF (Viral cathepsin OS=Choristoneura fumiferana nuclear polyhedrosis virus GN=Vcath PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.733e-36
Identity = 84/240 (35.00%), Postives = 133/240 (55.42%), Query Frame = 3
Query:  159 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI-LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAIN 872
            D+L A ++F  F  KFNK+Y+S+ E  RRF IF+ NL     +   D +A + + +F+DL+  E    Y GL   L+     +   +  P +  P +FDWR    V  VK+QG CG+CW+F+T G+LE    +   + ++LSEQQL+DCD           D+GC+GGL+++AFE  +  GG+  E DYPY   +    C+ + +K    V   +  +++ E+++   L   GP+ VAI+
Sbjct:   20 DVLKAPNYFEDFLHKFNKSYSSESEKLRRFQIFRHNLEEIINKNHNDSTAQYEINKFADLSKDETISKYTGLSLPLQTQNFCEVVVLDRPPDKGPLEFDWRRLNKVTSVKNQGMCGACWAFATLGSLESQFAIKHNQFINLSEQQLIDCDF---------VDAGCDGGLLHTAFEAVMNMGGIQAESDYPYEANNGD--CRANAAKFVVKVKKCYRYITVFEEKLKDLLRSVGPIPVAID 248          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.733e-36
Identity = 97/249 (38.96%), Postives = 137/249 (55.02%), Query Frame = 3
Query:  159 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLG----LRRKLRLPKDADQAPILPTNDL--PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAIN 872
            DL+  E H   +K +  K YA++ E   R  IF  N  + A+  +L      S   G+ +++D+   EF+ T  G    LR+ +R       A  +P   +  P   DWRE GAV  VKDQG CGSCW+FS+TGALEG +F   G LVSLSEQ LVDC  +         ++GCNGGLM++AF Y    GG+  E+ YPY G D   +C F+K+ I A+   F  +   DE+++   +   GP++VAI+
Sbjct:   22 DLIKEEWH--TYKLQHRKNYANEVEERFRMKIFNENRHKIAKHNQLFAQGKVSYKLGLNKYADMLHHEFKETMNGYNHTLRQLMRERTGLVGATYIPPAHVTVPKSVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQNLVDCSTKYG-------NNGCNGGLMDNAFRYIKDNGGIDTEKSYPYEGID--DSCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAID 259          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.876e-36
Identity = 84/216 (38.89%), Postives = 123/216 (56.94%), Query Frame = 3
Query:  231 EHDRRFTIFKANLRRA-ARRQKLDPSATH--GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAI 869
            EH+RRF +F  NL+   A   + D       G+ +F+DLT  EFR T+LG +   R     ++       +LP   DWREKGAV PVK+QG CGSCW+FS    +E  N L TG++++LSEQ+LV+C            +SGCNGGLM+ AF++ +K GG+  E+DYPY   D       + +K+  S+  F  V  ++++     V + P++VAI
Sbjct:   70 EHERRFLVFWDNLKFVDAHNARADERGGFRLGMNRFADLTNEEFRATFLGAKVAERSRAAGERYRHDGVEELPESVDWREKGAVAPVKNQGQCGSCWAFSAVSTVESINQLVTGEMITLSEQELVEC-------STNGQNSGCNGGLMDDAFDFIIKNGGIDTEDDYPYKAVDGKCDINRENAKV-VSIDGFEDVPQNDEKSLQKAVAHQPVSVAI 277          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CYSP2_LEIPI (Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.876e-36
Identity = 95/240 (39.58%), Postives = 129/240 (53.75%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYL-GLRRKLRLPKDADQAPILPTNDL---PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLK--AGGLMREEDYPYTGTDRGHACKFDKSK----IAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            F  FK+ + +AY +  E  +R   F+ NL      Q  +P A  G+T+F DL+ AEF   YL G        + A Q       DL   P   DWREKGAV PVKDQG+CGSCW+FS  G +EG  +LA  +LVSLSEQQLV CD           + GC+GGLM  AF++ L+   G L  E+ YPY  +  G+  +   S     + A +    ++   E  +AA L KNGP+A+A++
Sbjct:   38 FEEFKRTYGRAYETLAEEQQRLANFERNLELMREHQARNPHAQFGITKFFDLSEAEFAARYLNGAAYFAAAKRHAAQHYRKARADLSAVPDAVDWREKGAVTPVKDQGACGSCWAFSAVGNIEGQWYLAGHELVSLSEQQLVSCD---------DMNDGCDGGLMLQAFDWLLQNTNGHLHTEDSYPYV-SGNGYVPECSNSSEELVVGAQIDGHVLIGSSEKAMAAWLAKNGPIAIALD 267          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.368e-36
Identity = 91/230 (39.57%), Postives = 124/230 (53.91%), Query Frame = 3
Query:  207 NKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-----PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATG--KLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANF-SVVSLDEDQIAANLVKNGPLAVAIN 872
            ++ + S EE + RF IFKAN+               G+  F+D+T  E+R TYLG       P DA    + P+  +         DWR KGAV P+K+QG CG CWSFS TGA EGA ++A G   L S+SEQQL+DC            ++GC GGLM  AFEY +  GG+  E  YP+T       CK++ S I A ++++ +V S  E  +AA  V  GP +VAI+
Sbjct:   37 HQRHYSSEEFNGRFNIFKANMDYINEWNTKGSETVLGLNVFADITNEEYRATYLGT------PFDASSLEMTPSEKVFGGVQANSVDWRAKGAVTPIKNQGECGGCWSFSATGATEGAQYIANGDSDLTSVSEQQLIDCSGSYG-------NNGCEGGLMTLAFEYIINNGGIDTESSYPFTANT--EKCKYNPSNIGAELSSYVNVTSGSESDLAAK-VTQGPTSVAID 250          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: LMCPA_LEIME (Cysteine proteinase A OS=Leishmania mexicana GN=LMCPA PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 8.317e-36
Identity = 90/241 (37.34%), Postives = 127/241 (52.70%), Query Frame = 3
Query:  171 AEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVT-QFSDLTPAEFRRTYLG----LRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKA--GGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            A  H+  FKK+  KA+    E   RF  FK N++ A      +P A + V+ +F+DLTP EF + YL      R      +D       P+  +  D  WR+KGAV PVK+QG CGSCW+FS  G +EG    +   LVSLSEQ LV CD         + D GCNGGLM+ A  + +++  G +  E  YPYT          D+ ++ A +  F  +  DE++IA  + K GP+AVA++
Sbjct:   38 ASAHYGSFKKRHGKAFGGDAEEGHRFNAFKQNMQTAYFLNTQNPHAHYDVSGKFADLTPQEFAKLYLNPDYYARHLKNHKEDVHVDDSAPSGVMSVD--WRDKGAVTPVKNQGLCGSCWAFSAIGNIEGQWAASGHSLVSLSEQMLVSCD---------NIDEGCNGGLMDQAMNWIMQSHNGSVFTEASYPYTSGGGTRPPCHDEGEVGAKITGFLSLPHDEERIAEWVEKRGPVAVAVD 267          
The following BLAST results are available for this feature:
BLAST of FC878133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATL1_RAT2.189e-3638.53Cathepsin L1 OS=Rattus norvegicus GN=Ctsl1 PE=1 SV... [more]
CYSP1_LEIPI2.858e-3637.92Cysteine proteinase 1 OS=Leishmania pifanoi GN=CYS... [more]
LMCPB_LEIME3.733e-3639.75Cysteine proteinase B OS=Leishmania mexicana GN=LM... [more]
CYSP5_DICDI3.733e-3638.01Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]
CATV_NPVCF3.733e-3635.00Viral cathepsin OS=Choristoneura fumiferana nuclea... [more]
CATL_SARPE3.733e-3638.96Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
ORYB_ORYSJ4.876e-3638.89Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP2_LEIPI4.876e-3639.58Cysteine proteinase 2 OS=Leishmania pifanoi GN=CYS... [more]
CYSP6_DICDI6.368e-3639.57Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
LMCPA_LEIME8.317e-3637.34Cysteine proteinase A OS=Leishmania mexicana GN=LM... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA30BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878133 ID=FC878133; Name=FC878133; organism=Citrus clementina; type=EST; length=873bp
AAAACATGGGATCTAAAACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTC
GTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGTTGATCAGCTGAT
CAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCCACCACGAGAGCA
CCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCCCTATTCAAGAAG
AAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGACCGTAGGTTCAC
TATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACC
CGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAG
TTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGA
TGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTG
ATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGC
GGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTT
CCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATT
GCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGC
AATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGG
GCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTGATCGTGGCCACG
CCTGCAAATTCGATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGT
GTTGTCTCCCTTGATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGG
TCCCCTTGCAGTGGCCATCAATG
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