FC878133

Overview
NameFC878133
Unique NameFC878133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATW_HUMAN (Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 3.271e-32
Identity = 88/240 (36.67%), Postives = 122/240 (50.83%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPIL--------PTNDLPADFDWRE-KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            F LF+ +FN++Y S EEH  R  IF  NL +A R Q+ D  +A  GVT FSDLT  EF + Y G RR       A   P +        P   +P   DWR+   A+ P+KDQ +C  CW+ +  G +E    ++    V +S Q+L+DC         G C  GC+GG +  AF   L   GL  E+DYP+ G  R H C   K +  A + +F ++  +E +IA  L   GP+ V IN
Sbjct:   42 FKLFQIQFNRSYLSPEEHAHRLDIFAHNLAQAQRLQEEDLGTAEFGVTPFSDLTEEEFGQLY-GYRRA------AGGVPSMGREIRSEEPEESVPFSCDWRKVASAISPIKDQKNCNCCWAMAAAGNIETLWRISFWDFVDVSVQELLDC---------GRCGDGCHGGFVWDAFITVLNNSGLASEKDYPFQGKVRAHRCHPKKYQKVAWIQDFIMLQNNEHRIAQYLATYGPITVTIN 265          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.271e-32
Identity = 88/232 (37.93%), Postives = 118/232 (50.86%), Query Frame = 3
Query:  192 FKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKL----DPSATHGVTQFSDLTPAEFRRTYLGLRRKLR-LPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            FK ++ + Y   +E   R  +F+ N +      K     + +    + QF D+T  EF     G ++  R  PK    A   P   + AD DWR K  V PVKDQ  CGSCW+FS TGALEG +FL   +LVSLSEQQLVDC  +         + GC GG M SAF+Y    GG+  E  YPY   DR  +C+FD + I A       V   E+ +   +   GP++VAI+
Sbjct:   23 FKTQYGRKYGDAKEELYRQRVFQQNEQLIEDFNKKFENGEVTFKVAMNQFGDMTNEEFNAVMKGYKKGSRGEPKAVFTAEAGP---MAADVDWRTKALVTPVKDQEQCGSCWAFSATGALEGQHFLKNDELVSLSEQQLVDCSTDYG-------NDGCGGGWMTSAFDYIKDNGGIDTESSYPYEAEDR--SCRFDANSIGAICTGSVEVQHTEEALQEAVSGVGPISVAID 242          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: ACTN_ACTDE (Actinidain OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.271e-32
Identity = 81/226 (35.84%), Postives = 117/226 (51.77%), Query Frame = 3
Query:  201 KFNKAYASQEEHDRRFTIFKANLRRAARRQK-LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            K+ K+Y S  E +RRF IFK  LR         + S   G+ QF+DLT  EFR TYLG        K +++        LP+  DWR  GAV  +K QG CG CW+FS    +EG N + TG L+SLSEQ+L+DC    +         GCNGG +   F++ +  GG+  EE+YPYT  D    C  D +++   ++  +  V  + +      V   P++VA++
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLGFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD--GECNLDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALD 264          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATS_MOUSE (Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.243e-31
Identity = 86/238 (36.13%), Postives = 119/238 (50.00%), Query Frame = 3
Query:  174 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAIN 872
            ++H+ L+KK   K Y  + E + R  I++ NL+             H    G+    D+T  E       LR   + PK            LP   DWREKG V  VK QGSCG+CW+FS  GALEG   L TGKL+SLS Q LVDC +E   E+ G  + GC GG M  AF+Y +  GG+  +  YPY  TD    C ++    AA+ + +  +   DED +   +   GP++V I+
Sbjct:   33 DYHWDLWKKTHEKEYKDKNEEEVRRLIWEKNLKFIMIHNLEYSMGMHTYQVGMNDMGDMTNEEISCRMGALRISRQSPKTVTFRSY-SNRTLPDTVDWREKGCVTEVKYQGSCGACWAFSAVGALEGQLKLKTGKLISLSAQNLVDCSNE---EKYG--NKGCGGGYMTEAFQYIIDNGGIEADASYPYKATD--EKCHYNSKNRAATCSRYIQLPFGDEDALKEAVATKGPVSVGID 262          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATS_BOVIN (Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.623e-31
Identity = 84/238 (35.29%), Postives = 114/238 (47.90%), Query Frame = 3
Query:  174 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAIN 872
            +HH+ L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E       LR   + P++       P   LP   DWREKG V  VK QG+CGSCW+FS  GALE    L TGKLVSLS Q LVDC            + GCNGG M  AF+Y +   G+  E  YPY   D    C++D    AA+ + +  +    ++     V N GP++V I+
Sbjct:   25 DHHWDLWKKTYGKQYKEKNEEVARRLIWEKNLKTVTLHNLEHSMGMHSYELGMNHLGDMTSEEVISLMSSLRVPSQWPRNVTYKSD-PNQKLPDSMDWREKGCVTEVKYQGACGSCWAFSAVGALEAQVKLKTGKLVSLSAQNLVDC------STAKYGNKGCNGGFMTEAFQYIIDNNGIDSEASYPYKAMD--GKCQYDVKNRAATCSRYIELPFGSEEALKEAVANKGPVSVGID 253          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATS_HUMAN (Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 2.120e-31
Identity = 85/241 (35.27%), Postives = 122/241 (50.62%), Query Frame = 3
Query:  174 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAIN 872
            +HH+ L+KK + K Y  + E   R  I++ NL+             H    G+    D+T  E     + L   LR+P    +     +N    LP   DWREKG V  VK QGSCG+CW+FS  GALE    L TGKLVSLS Q LVD    C  E+ G  + GCNGG M +AF+Y +   G+  +  YPY   D+   C++D    AA+ + ++ +    + +    V N GP++V ++
Sbjct:   25 DHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEV----MSLMSSLRVPSQWQRNITYKSNPNRILPDSVDWREKGCVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVD----CSTEKYG--NKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ--KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 253          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATS_RAT (Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.769e-31
Identity = 89/241 (36.93%), Postives = 123/241 (51.04%), Query Frame = 3
Query:  174 EHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATH----GVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND---LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSL-DEDQIAANLVKNGPLAVAIN 872
            +HH+ L+KK   +    Q E D R  I++ NL+             H    G+    D+TP E     +G    LR+P+  +++  L ++    LP   DWREKG V  VK QGSCGSCW+FS  GALEG   L TGKLVSLS Q LVDC  E   E+ G  + GC GG M  AF+Y +    +  E  YPY   D    C +D    AA+ + +  +   DE+ +   +   GP++V I+
Sbjct:   23 DHHWDLWKKTRMRRNTDQNEEDVRRLIWEKNLKFIMLHNLEHSMGMHSYSVGMNHMGDMTPEEV----IGYMGSLRIPRPWNRSGTLKSSSNQTLPDSVDWREKGCVTNVKYQGSCGSCWAFSAEGALEGQLKLKTGKLVSLSAQNLVDCSTE---EKYG--NKGCGGGFMTEAFQYIIDT-SIDSEASYPYKAMD--EKCLYDPKNRAATCSRYIELPFGDEEALKEAVATKGPVSVGID 251          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: ACTN_ACTCH (Actinidain OS=Actinidia chinensis PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 4.723e-31
Identity = 80/226 (35.40%), Postives = 116/226 (51.33%), Query Frame = 3
Query:  201 KFNKAYASQEEHDRRFTIFKANLRRAARRQK-LDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFD-KSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            K+ K+Y S  E +RRF IFK  LR         + S   G+ QF+DLT  EFR TYL         K +++        LP+  DWR  GAV  +K QG CG CW+FS    +EG N + TG L+SLSEQ+L+DC    +         GCNGG +   F++ +  GG+  EE+YPYT  D    C  D +++   ++  +  V  + +      V   P++VA++
Sbjct:   48 KYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQFADLTDEEFRSTYLRFTSGSNKTKVSNRYEPRVGQVLPSYVDWRSAGAVVDIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTR-------GCNGGYITDGFQFIINNGGINTEENYPYTAQD--GECNVDLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSVALD 264          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATV_GVXN (Viral cathepsin OS=Xestia c-nigrum granulosis virus GN=VCATH PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.168e-31
Identity = 84/244 (34.43%), Postives = 126/244 (51.64%), Query Frame = 3
Query:  159 DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRL--PKDADQAPILPTND----LPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            D+  A+  F+ F  K+NK Y   +E + RF IFK NL     R  L+ SA   +   +D++  E  +   GL+  L     K++   P + + D    +P  FDWR++ +V  VK Q  CGSCW+FS    +E    +     + LSEQQLVDCD           ++GCNGGLM+ AFE  ++AGG+  E  YPYTG D    CK + ++       ++     E ++   L + GP++VAI+
Sbjct:   35 DMSNAQELFNEFVVKYNKVYKDDQEKEARFEIFKQNLADINARNALEDSAMFEINSRADISSNELLQKLTGLKLSLMRGEKKNSFCTPTVISGDSSGKVPDSFDWRDRNSVTSVKMQKECGSCWAFSAVANIESLYHIKHNVSLDLSEQQLVDCD---------KVNNGCNGGLMSWAFEGIIRAGGISYEAPYPYTGVD--GVCK-NTTRYVQLSGCYAYDLRSEKKLRQVLHEKGPVSVAID 266          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.056e-31
Identity = 75/186 (40.32%), Postives = 104/186 (55.91%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLR----RKLRLPKDADQAPILPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 728
            F  +  K  K Y S  E +RR TIF+ NLR    R   + S   G+T F+DL+  E++    G      R       +D+      + LP   DWR +GAV  VKDQG C SCW+FST GA+EG N + TG+LV+LSEQ L++C+ E         ++GC GG + +A+E+ +K GGL  + DYPY
Sbjct:   49 FESWMVKHGKVYGSVAEKERRLTIFEDNLRFINNRNAENLSYRLGLTGFADLSLHEYKEVCHGADPRPPRNHVFMTSSDRYKTSADDVLPKSVDWRNEGAVTEVKDQGHCRSCWAFSTVGAVEGLNKIVTGELVTLSEQDLINCNKE---------NNGCGGGKLETAYEFIMKNGGLGTDNDYPY 225          
The following BLAST results are available for this feature:
BLAST of FC878133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATW_HUMAN3.271e-3236.67Cathepsin W OS=Homo sapiens GN=CTSW PE=1 SV=2[more]
CYSP3_HOMAM4.271e-3237.93Digestive cysteine proteinase 3 OS=Homarus america... [more]
ACTN_ACTDE4.271e-3235.84Actinidain OS=Actinidia deliciosa PE=1 SV=1[more]
CATS_MOUSE1.243e-3136.13Cathepsin S OS=Mus musculus GN=Ctss PE=2 SV=1[more]
CATS_BOVIN1.623e-3135.29Cathepsin S OS=Bos taurus GN=CTSS PE=1 SV=2[more]
CATS_HUMAN2.120e-3135.27Cathepsin S OS=Homo sapiens GN=CTSS PE=1 SV=3[more]
CATS_RAT2.769e-3136.93Cathepsin S OS=Rattus norvegicus GN=Ctss PE=2 SV=1[more]
ACTN_ACTCH4.723e-3135.40Actinidain OS=Actinidia chinensis PE=1 SV=4[more]
CATV_GVXN6.168e-3134.43Viral cathepsin OS=Xestia c-nigrum granulosis viru... [more]
CPR3_ARATH8.056e-3140.32Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA30BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878133 ID=FC878133; Name=FC878133; organism=Citrus clementina; type=EST; length=873bp
AAAACATGGGATCTAAAACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTC
GTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGTTGATCAGCTGAT
CAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCCACCACGAGAGCA
CCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCCCTATTCAAGAAG
AAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGACCGTAGGTTCAC
TATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACC
CGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAG
TTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGA
TGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTG
ATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGC
GGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTT
CCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATT
GCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGC
AATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGG
GCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTGATCGTGGCCACG
CCTGCAAATTCGATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGT
GTTGTCTCCCTTGATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGG
TCCCCTTGCAGTGGCCATCAATG
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