FC878133

Overview
NameFC878133
Unique NameFC878133
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length873
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11876 contig Ccv1_Contig11876:94..966. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATV_NPVSE (Viral cathepsin OS=Spodoptera exigua nuclear polyhedrosis virus (strain US) GN=VCATH PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.056e-31
Identity = 82/254 (32.28%), Postives = 130/254 (51.18%), Query Frame = 3
Query:  138 HHESTNN-----DLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP---TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAIN 872
            +H S NN     ++  A  +F  F  ++NK Y S++E   R+ IF+ N+    ++   + SA + + +F+D+   E    + GL     L  +  +  ++        P  FDWR    +  VKDQG CG+CW F++ GALE    +   +L+ LSEQQLVDCD           D GC+GGL+++A+E  +K GG+ +E DY Y        C     K A  V N +  V L+E+++   L   GP+A+A++
Sbjct:   20 NHASANNKPMLYNINSAPLYFEKFITQYNKQYKSEDEKKYRYNIFRHNIESINQKNSRNDSAVYKINRFADMPKNEIVIRHTGLASG-ELGLNFCETIVVDGPAQRQRPVSFDWRSMNKITSVKDQGMCGACWRFASLGALESQYAIKYDRLIDLSEQQLVDCDF---------VDMGCDGGLIHTAYEQIMKMGGVEQEFDYSYKA--ERQPCALKPHKFATGVRNCYRYVILNEERLEDLLRYVGPIAIAVD 261          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATV_NPVMC (Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.056e-31
Identity = 83/264 (31.44%), Postives = 136/264 (51.52%), Query Frame = 3
Query:   96 LIRQVTDGGDEILSHHESTN-NDLLGAEHHFSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP---TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVAN-FSVVSLDEDQIAANLVKNGPLAVAIN 872
            L+  V    D++++     N  ++  A  +F  F  ++NK Y+S++E   R+ IF+ N+     +   + SA + + +F+D+T  E    + GL     +  +  +  ++        PA+FDWR    V  VKDQG CG+CW+F+  GALE    +   +L+ L+EQQLVDCD           D GC+GGL+++A+E  +  GG+ +E DYPY        C     K A  V N +  V L E+++   L   GP+A+A++
Sbjct:   10 LVSAVLTSHDQVVAVTIKPNLYNINSAPLYFEKFISQYNKQYSSEDEKKYRYNIFRHNIESINAKNSRNDSAVYKINRFADMTKNEVVNRHTGLASG-DIGANFCETIVVDGPGQRQRPANFDWRNYNKVTSVKDQGMCGACWAFAGLGALESQYAIKYDRLIDLAEQQLVDCDF---------VDMGCDGGLIHTAYEQIMHIGGVEQEYDYPYKAVRL--PCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVD 261          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: BROM1_ANACO (Fruit bromelain OS=Ananas comosus PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.056e-31
Identity = 76/236 (32.20%), Postives = 123/236 (52.12%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAAR-RQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL-----PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            F  +  ++ + Y   +E  RRF IFK N++       + + S T G+ QF+D+T +EF   Y G+     LP + ++ P++  +D+     P   DWR+ GAV  VK+Q  CGSCWSF+    +EG   + TG LVSLSEQ+++DC          +   GC GG +N A+++ +   G+  EE+YPY        C  +    +A +  +S V  ++++     V N P+A  I+
Sbjct:   37 FEEWMAEYGRVYKDDDEKMRRFQIFKNNVKHIETFNSRNENSYTLGINQFTDMTKSEFVAQYTGVS----LPLNIEREPVVSFDDVNISAVPQSIDWRDYGAVNEVKNQNPCGSCWSFAAIATVEGIYKIKTGYLVSLSEQEVLDC----------AVSYGCKGGWVNKAYDFIISNNGVTTEENYPYLAYQ--GTCNANSFPNSAYITGYSYVRRNDERSMMYAVSNQPIAALID 256          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATL1_CHICK (Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.374e-30
Identity = 73/146 (50.00%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  438 PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKN-GPLAVAIN 872
            P   DWREKG V PVKDQG CGSCW+FSTTGALEG +F   GKLVSLSEQ LVDC     PE     + GCNGGLM+ AF+Y    GG+  EE YPYT  D    C++     AA+   F  +    ++     V + GP++VAI+
Sbjct:    2 PRSVDWREKGYVTPVKDQGQCGSCWAFSTTGALEGQHFRTKGKLVSLSEQNLVDCSR---PEG----NQGCNGGLMDQAFQYVQDNGGIDSEESYPYTAKD-DEDCRYKAEYNAANDTGFVDIPQGHERALMKAVASVGPVSVAID 139          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATW_MOUSE (Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.344e-30
Identity = 81/233 (34.76%), Postives = 122/233 (52.36%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWRE-KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            F LF+ +FN++Y +  E+ RR +IF  NL +A R Q+ D  +A  G T FSDLT  EF + Y   R   R P    +       + +P   DWR+ K  +  VK+QGSC  CW+ +    ++    +   + V +S Q+L+DC+          C +GCNGG +  A+   L   GL  E+DYP+ G  + H C   K K  A + +F+++S +E  IA  L  +GP+ V IN
Sbjct:   40 FKLFQIRFNRSYWNPAEYTRRLSIFAHNLAQAQRLQQEDLGTAEFGETPFSDLTEEEFGQLYGQERSPERTPNMTKKVESNTWGESVPRTCDWRKAKNIISSVKNQGSCKCCWAMAAADNIQALWRIKHQQFVDVSVQELLDCER---------CGNGCNGGFVWDAYLTVLNNSGLASEKDYPFQGDRKPHRCLAKKYKKVAWIQDFTMLSNNEQAIAHYLAVHGPITVTIN 263          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CATW_FELCA (Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 6.819e-30
Identity = 82/233 (35.19%), Postives = 119/233 (51.07%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKANLRRAARRQKLD-PSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTND-LPADFDWRE-KGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAIN 872
            F+LF+ ++N++Y++ EE+ RR  IF  NL +A + ++ D  +A  GVT FSDLT  EF R Y   R     PK   +       + +P   DWR+  G +  VK Q SC  CW+ +  G +E    +   + V LS Q+L+DC         G C  GC GG +  AF   L   GL  E+DYP+ G  + H C   K    A + +F ++  +E +IA  L   GP+ V IN
Sbjct:   42 FTLFQIQYNRSYSNPEEYARRLDIFAHNLAQAQQLEEEDLGTAEFGVTPFSDLTEEEFGRLYGHRRMDGEAPKVGREVGSEEWGESVPPTCDWRKLDGVISSVKKQESCSCCWAMAAAGNIEALWAIKYRQSVELSVQELLDC---------GRCGDGCRGGFVWDAFITVLNNSGLASEKDYPFQGQVKPHRCLAKKRTKVAWIQDFIMLPDNEQKIAWYLATQGPITVTIN 265          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: P34_SOYBN (P34 probable thiol protease OS=Glycine max PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.907e-30
Identity = 81/250 (32.40%), Postives = 127/250 (50.80%), Query Frame = 3
Query:  183 FSLFKKKFNKAYASQEEHDRRFTIFKAN---LRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILPTNDL----------PADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHACKFDKSKIAASVANFSVVSLDE-------DQIAANLVKNGPLAVAIN 872
            F L+K +  + Y + EE  +R  IFK N   +R     +K   S   G+ +F+D+TP EF + YL      + PKD  Q   +    +          PA +DWR+KG +  VK QG CG  W+FS TGA+E A+ +ATG LVSLSEQ+LVDC  E +         G   G    +FE+ L+ GG+  ++DYPY   +    CK +K +   ++  +  + + +       +Q   + +   P++V+I+
Sbjct:   44 FQLWKSEHGRVYHNHEEEAKRLEIFKNNSNYIRDMNANRKSPHSHRLGLNKFADITPQEFSKKYL------QAPKDVSQQIKMANKKMKKEQYSCDHPPASWDWRKKGVITQVKYQGGCGRGWAFSATGAIEAAHAIATGDLVSLSEQELVDCVEESE---------GSYNGWQYQSFEWVLEHGGIATDDDYPYRAKE--GRCKANKIQDKVTIDGYETLIMSDESTESETEQAFLSAILEQPISVSID 276          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: PAPA3_CARPA (Caricain OS=Carica papaya PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 3.384e-29
Identity = 79/197 (40.10%), Postives = 103/197 (52.28%), Query Frame = 3
Query:  150 TNNDLLGAEHHFSLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPILP-TNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 728
            + +DL   E    LF       NK Y + +E   RF IFK NL       K + S   G+ +F+DL+  EF   Y+G      + +  D+  I   T +LP + DWR+KGAV PV+ QGSCGSCW+FS    +EG N + TGKLV LSEQ+LVDC+             GC GG    A EY  K G  +R + YPY
Sbjct:   34 SQDDLTSTERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDATIEQSYDEEFINEDTVNLPENVDWRKKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERR---------SHGCKGGYPPYALEYVAKNGIHLRSK-YPY 220          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: PAPA4_CARPA (Papaya proteinase 4 OS=Carica papaya PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 4.420e-29
Identity = 80/202 (39.60%), Postives = 104/202 (51.49%), Query Frame = 3
Query:  150 TNNDLLGAEHHFSLFKK---KFNKAYASQEEHDRRFTIFKANLRRAARRQKLDPSATHGVTQFSDLTPAEFRRTYLGLRRKLRLPKDADQAPI------LPTNDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPY 728
            + +DL   E    LF     K NK Y + +E   RF IFK NL+    R K+      G+ +FSDL+  EF+  Y+G      LP+D    P           DLP   DWR KGAV PVK QG C SCW+FST   +EG N + TG LV LSEQ+LVDCD +           GCN G  +++ +Y  + G  +R + YPY
Sbjct:   34 SQDDLTSTERLIQLFNSWMLKHNKNYKNVDEKLYRFEIFKDNLKYIDERNKMINGYWLGLNEFSDLSNDEFKEKYVG-----SLPEDYTNQPYDEEFVNEDIVDLPESVDWRAKGAVTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDKQ---------SYGCNRGYQSTSLQYVAQNGIHLRAK-YPY 220          
BLAST of FC878133 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.540e-29
Identity = 63/148 (42.57%), Postives = 92/148 (62.16%), Query Frame = 3
Query:  429 NDLPADFDWREKGAVGPVKDQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEPGSCDSGCNGGLMNSAFEYTLKAGGLMREEDYPYTGTDRGHAC-KFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAI 869
            + LP   DWREKG +  VKDQGSCGSCW+FS   A+E  N + TG L+SLSEQ+LVDCD         S + GC+GGLM+ AFE+ +K GG+  EEDYPY   +R   C ++ K+     + ++  V ++ ++     V + P+++A+
Sbjct:   16 DSLPESIDWREKGVLVGVKDQGSCGSCWAFSAVAAMESINAIVTGNLISLSEQELVDCDR--------SYNEGCDGGLMDYAFEFVIKNGGIDTEEDYPY--KERNGVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIAL 153          
The following BLAST results are available for this feature:
BLAST of FC878133 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
CATV_NPVSE8.056e-3132.28Viral cathepsin OS=Spodoptera exigua nuclear polyh... [more]
CATV_NPVMC8.056e-3131.44Viral cathepsin OS=Mamestra configurata nucleopoly... [more]
BROM1_ANACO8.056e-3132.20Fruit bromelain OS=Ananas comosus PE=1 SV=1[more]
CATL1_CHICK1.374e-3050.00Cathepsin L1 (Fragments) OS=Gallus gallus GN=CTSL1... [more]
CATW_MOUSE2.344e-3034.76Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=1[more]
CATW_FELCA6.819e-3035.19Cathepsin W OS=Felis catus GN=CTSW PE=2 SV=2[more]
P34_SOYBN8.907e-3032.40P34 probable thiol protease OS=Glycine max PE=1 SV... [more]
PAPA3_CARPA3.384e-2940.10Caricain OS=Carica papaya PE=1 SV=2[more]
PAPA4_CARPA4.420e-2939.60Papaya proteinase 4 OS=Carica papaya PE=1 SV=3[more]
CYSPL_SOLLC7.540e-2942.57Low-temperature-induced cysteine proteinase (Fragm... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA30BA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878133 ID=FC878133; Name=FC878133; organism=Citrus clementina; type=EST; length=873bp
AAAACATGGGATCTAAAACAGTAGTTTTCTTTCTGGTCTCTCTCGTCGTC
GTCTCCGCCGTTTCATCAGGGACGTTGATCGACGATGTTGATCAGCTGAT
CAGGCAAGTAACGGACGGCGGTGACGAGATCCTAAGCCACCACGAGAGCA
CCAACAACGACCTCTTGGGCGCAGAGCACCACTTCTCCCTATTCAAGAAG
AAGTTCAATAAAGCGTACGCTTCGCAGGAGGAGCACGACCGTAGGTTCAC
TATTTTCAAGGCCAACTTGCGACGCGCCGCGCGTCGCCAGAAGCTCGACC
CGAGCGCCACCCACGGCGTCACTCAGTTCTCCGACTTGACTCCGGCCGAG
TTCCGCCGGACGTACCTTGGCCTCAGGAGGAAGCTGAGGCTGCCTAAGGA
TGCGGATCAGGCGCCGATCTTGCCTACGAATGATTTGCCGGCGGATTTTG
ATTGGAGAGAGAAGGGCGCTGTAGGCCCTGTTAAAGATCAGGGTTCATGC
GGATCATGCTGGAGTTTCAGTACAACAGGGGCCTTGGAAGGTGCTAACTT
CCTGGCAACTGGAAAGCTTGTGAGCCTCAGTGAGCAACAGCTTGTGGATT
GCGATCATGAGTGTGATCCTGAGGAACCAGGTTCTTGTGATTCTGGATGC
AATGGTGGGCTTATGAACAGTGCTTTTGAGTACACACTCAAGGCTGGTGG
GCTTATGCGGGAGGAAGACTATCCTTACACCGGCACTGATCGTGGCCACG
CCTGCAAATTCGATAAGAGTAAGATTGCTGCCTCAGTGGCCAACTTCAGT
GTTGTCTCCCTTGATGAGGATCAAATTGCTGCCAATCTTGTGAAAAATGG
TCCCCTTGCAGTGGCCATCAATG
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