FC878143

Overview
NameFC878143
Unique NameFC878143
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length848
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.678e-36
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 3
Query:  351 WASLPPELLCDVIKRLEESESS-WPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            W  L PEL+ +V++R+E S    WPARK +V+CA VCR WR     +VR     G++TFP SLKQPG +D  IQCF+KR+K    ++L+
Sbjct:   24 WGGLLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLY 112          

HSP 2 Score: 79.337 bits (194), Expect = 4.678e-36
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 2
Query:  638 VENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSA 823
            ++ GKFL++A+R RR   TEYVIS+DAD++S+ S+ Y+GKLRS+F GT F IYD QPP+  A
Sbjct:  120 MDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYDDA 181          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.181e-34
Identity = 45/88 (51.14%), Postives = 62/88 (70.45%), Query Frame = 3
Query:  351 WASLPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            W++L P+LL D+++ +E     WP R+ VVACA+VCR WR +   +V+ P   GK+TFP SLKQPG RD  +QCFIKR+K N T+ L+
Sbjct:   51 WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLY 138          

HSP 2 Score: 61.6178 bits (148), Expect = 4.181e-34
Identity = 29/63 (46.03%), Postives = 42/63 (66.67%), Query Frame = 2
Query:  635 LVENGKFLLSAKRTRRTTCTEYVISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHTSA 823
            L ++ KFLL+A+R RR    EY I++++D +   S + +G L+SNF GTKF I D QPP+  A
Sbjct:  145 LTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPPYEGA 207          
BLAST of FC878143 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.099e-24
Identity = 46/85 (54.12%), Postives = 65/85 (76.47%), Query Frame = 3
Query:  360 LPPELLCDVIKRLEESESSWPARKHVVACAAVCRSWRAMCKEIVRSPEFCGKLTFPVSLKQPGARDGTIQCFIKRDKSNLTYHLF 614
            +PPELL DV+ R+E SE +WP+RK+VV+C  VC++WR + KEIV  PE   K TFP+SLKQPG     +QC++KR++SN T++L+
Sbjct:    1 MPPELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLY 85          
The following BLAST results are available for this feature:
BLAST of FC878143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TLP10_ORYSJ4.678e-3648.31Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP2_ORYSJ4.181e-3451.14Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TLP4_ARATH9.099e-2454.12Putative Tubby-like protein 4 OS=Arabidopsis thali... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA3CA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA3CA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878143 ID=FC878143; Name=FC878143; organism=Citrus clementina; type=EST; length=848bp
TTAGTTTATGTTATGTTACCAGCTATGTTCTGTTTCTGACTTGACTTTGC
AGATATTGAGATCTTTTGGTGGTGCTTGGAGTCTTTGACCAGCTTTATTT
AACAGCCATAAATACATGACTTGTAGAATATAATTTATCGGAAGTCTTCA
AAAGGGTGATATACTTGTGCTGCTGCTTCTGAATAATTTATAAGATGTCA
TTCCGTAGCATAGTACGTGATGTAAGAGATAGTTTCGGGAGTTTATCTAG
AAGAAGTTTCGATTTTAGATTGACTGGCCATCATGGAGGGAAATCCCATG
GTTCGTCAAACGATTTGCATGACCAGAATATTGTAATTCAAAATAGTTGT
TGGGCTAGTCTCCCACCAGAGCTACTTTGTGATGTAATCAAGAGGTTGGA
GGAGAGTGAGAGTTCTTGGCCCGCTCGAAAACATGTTGTTGCGTGTGCTG
CTGTTTGCCGTTCTTGGAGGGCTATGTGCAAAGAAATTGTTAGAAGTCCA
GAGTTCTGTGGGAAGCTTACTTTCCCAGTGTCCTTGAAGCAGCCTGGGGC
ACGTGATGGAACCATTCAATGTTTCATTAAGAGGGATAAATCTAATTTAA
CATATCACCTTTTTTGTGTCTTAGCCCTGCTTTACTAGTTGAAAATGGAA
AATTCCTTCTGTCCGCGAAAAGGACCCGTCGAACTACTTGTACAGAGTAT
GTAATCTCCATGGATGCTGACAACATTTCAAGATCAAGCAGCACTTATAT
CGGAAAGTTGAGGTCAAATTTCCTTGGGACAAAATTTATAATATATGACA
CACAGCCACCACATACCTCTGCTAATATTACCCCTTCGGGATGTACAA
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