FC878148

Overview
NameFC878148
Unique NameFC878148
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length913
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878148_ssr50 microsatellite FC878148_ssr50:50..63. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10498 contig Ccv1_Contig10498:1..919. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.637e-16
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPF 385
            C+ C   TA +FCRAD+A LC+ CD  +H+AN L+ +H R  +C+ C + P  V C  D   LC  CD D+H +   +  HER  V  F
Sbjct:   12 CEFCGERTAVLFCRADTAKLCLPCDQHVHSANLLSRKHVRSQICDNCSKEPVSVRCFTDNLVLCQECDWDVHGSCSSSATHERSAVEGF 100          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.033e-15
Identity = 36/91 (39.56%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  113 KLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPF 385
            +LCD C S+ A V+C+ADSA LC+ CD ++H AN+L ++H R  +C+ C ++P+ + C+ + + LC  CD   H+A+  +  H R P   F
Sbjct:   11 RLCDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLLCDSCNESPSSLFCETERSVLCQNCDWQHHTAS--SSLHSRRPFEGF 99          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.349e-15
Identity = 37/89 (41.57%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPF 385
            CD C   TA +FCRAD+A LC+ CD ++H AN L+ +H R  +C+ C   P  V C  D   LC  CD D+H +  ++  H R  V  F
Sbjct:    9 CDFCGERTAVLFCRADTAKLCLPCDQQVHTANLLSRKHVRSQICDNCGNEPVSVRCFTDNLILCQECDWDVHGSCSVSDAHVRSAVEGF 97          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL10_ARATH (Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsis thaliana GN=COL10 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.925e-15
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 2
Query:  116 LCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSA-NPLARRHERVPVTPFYDSVDSSA 409
            +CD C    + V+CR+D+A LC++CD  +H+AN L+ RH+R  VCE C   PA V C  +  +LC  CD   H   N     H +      Y    SSA
Sbjct:    4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLVCERCNAQPASVRCSDERVSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSA 102          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.340e-14
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2
Query:  116 LCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHS 337
            +CD C    + V+CR+D+A LC++CD  +H+AN L+ RH+R  VCE C   PA V C  +  +LC  CD   H+
Sbjct:    4 MCDFCGEQRSMVYCRSDAACLCLSCDRSVHSANALSKRHSRTLVCERCNAQPATVRCVEERVSLCQNCDWSGHN 77          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.396e-12
Identity = 32/90 (35.56%), Postives = 48/90 (53.33%), Query Frame = 2
Query:   89 VALREMASKLCDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARR 358
            + + E   ++C+ CK+  A V+C AD+A LC+ CD K+H+AN L+ RH R  +C+ C+  P  V C      LC  C+   H       R
Sbjct:    4 IIIIENMERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKNQPCVVRCFDHKMFLCHGCNDKFHGGGSSEHR 93          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL11_ARATH (Putative zinc finger protein CONSTANS-LIKE 11 OS=Arabidopsis thaliana GN=COL11 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.823e-12
Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARR 358
            CD C +  A ++C++DSA LC+NCD  +H+AN L+ RH R  +CE C   P  V C  +  +LC  C     +   L  R
Sbjct:    5 CDFCGTEKALIYCKSDSAKLCLNCDVNVHSANPLSQRHTRSLLCEKCSLQPTAVHCMNENVSLCQGCQWTASNCTGLGHR 84          
BLAST of FC878148 vs. ExPASy Swiss-Prot
Match: COL12_ARATH (Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsis thaliana GN=COL12 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.062e-12
Identity = 32/89 (35.96%), Postives = 48/89 (53.93%), Query Frame = 2
Query:  119 CDSCKSATATVFCRADSAFLCVNCDTKIHAANKLASRHARVWVCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPF 385
            CD C ++ A ++C++D A LC+NCD  +H+AN L+ RH R  +CE C   PA + C  +  + C  C    H +N     H    + PF
Sbjct:    5 CDHCATSQALIYCKSDLAKLCLNCDVHVHSANPLSHRHIRSLICEKCFSQPAAIRCLDEKVSYCQGC--HWHESNCSELGHRVQSLNPF 91          
The following BLAST results are available for this feature:
BLAST of FC878148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
COL14_ARATH4.637e-1641.57Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsi... [more]
COL13_ARATH1.033e-1539.56Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
COL15_ARATH1.349e-1541.57Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsi... [more]
COL10_ARATH3.925e-1538.38Zinc finger protein CONSTANS-LIKE 10 OS=Arabidopsi... [more]
COL9_ARATH4.340e-1443.24Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis... [more]
COLX_ARATH1.396e-1235.56Putative zinc finger protein At1g68190 OS=Arabidop... [more]
COL11_ARATH1.823e-1238.75Putative zinc finger protein CONSTANS-LIKE 11 OS=A... [more]
COL12_ARATH4.062e-1235.96Zinc finger protein CONSTANS-LIKE 12 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG01RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878148 ID=FC878148; Name=FC878148; organism=Citrus clementina; type=EST; length=913bp
CAGCATTTGTGTAATAAACGAAAAGGGCGAACTACACAGAGACCAAGTCA
GAGAGAGAGAGAGTGTTTTAAAATTTTTGAACTGACTCGTTGCGTTGAGA
GAAATGGCATCCAAGCTGTGTGACTCGTGCAAATCGGCAACGGCGACTGT
GTTCTGCCGGGCCGACTCGGCGTTCTTGTGTGTCAACTGCGACACCAAAA
TCCACGCGGCCAACAAGCTGGCGTCGCGCCACGCGCGTGTCTGGGTTTGC
GAGGTGTGTGAGCAGGCGCCGGCCCACGTCACGTGCAAGGCAGACGCTGC
GGCGCTCTGCGTCACGTGCGACCGCGACATCCATTCCGCCAACCCACTGG
CCCGGCGCCACGAGCGAGTCCCCGTGACACCCTTCTACGACTCAGTCGAC
TCCTCTGCCGTCAAGCAAGGCAACGGCGGAGTAGTCAACTTCTTAGACGA
AGACCGCTACTTGGACCACGTCGACGGGAGAAGCGGTGACGTCAGCAGGG
AGGAAGCAGAGGCGGCTTCGTGGCTGCTGCCGATCCCGAAGGTGGCGGAT
TTGAACACGGGTCAGGCGCAGGAGCCGTATGTGTTCCCGGATATGGATCC
GTATTTGGATTTAGATTACGGGCATGTGGATACGAAGCTAGAAGCCCAGG
AGCAAAACAGTTCGGGCACTGACGGTGTTGTTCCCGTACAAACCAGAAAC
GTTAACGCTAACGGCCATTTGGTCAACGATGCATGCTTTGACCTCGATTT
TCCAGGCTCCAAATCTTACGGTTATGGCTACAACTCTCACTCGCAGTGCC
TCAGTCAGAGTGTGTCGTCGTCATCGTTGGAGGTGGGAGTGGTGCCAGAT
GGAAGTAGTGCGATGACGGACATAACGAATCTGTACGGCAAAGGAGTGGG
GGTGGAAGGCAGG
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