FC878151

Overview
NameFC878151
Unique NameFC878151
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length822
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11501 contig Ccv1_Contig11501:55..876. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878151 vs. ExPASy Swiss-Prot
Match: EIF3E_CHAGB (Eukaryotic translation initiation factor 3 subunit E OS=Chaetomium globosum GN=INT6 PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.247e-46
Identity = 98/270 (36.30%), Postives = 162/270 (60.00%), Query Frame = 2
Query:   41 NLNATMATYDLTQRIAPNLDRHLVFPLLEFL------QERQMYPDE----QILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFESGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRY 820
            N +A ++ YDL  ++A NLDRH++FPLLEF       +E  +  DE    +I ++K  LL  +NM DY  +++  L   E+ P +  +++ +V ++L+ LE++ + I+  L+  +   +LR+ D+  NL+ L   +Q+  D + AL+     Q+  GNY  A++ LY++R L T++++   A WG++A EIL  NW+ A+EEL +++E + D K   +PL Q+Q R  L HW+LF  FN +  R  I++LF    Y+N IQ N P +LRY
Sbjct:    8 NGDAAVSDYDLMLKLAQNLDRHMIFPLLEFSAGQLVDEESGVVRDEAKAREITQAKYSLLKNSNMTDYVANLYCELAGVEEPPAEFADKKQKVFSQLQNLEQQTSKIIELLEREDVVNNLRS-DKVANLEFLKREHQVTMDMVNALFDLGNLQYSCGNYGDASEMLYRFRVLSTDNDKVAFATWGRLACEILTMNWESAMEELVKVRETI-DTKLSQNPLAQLQHRTALTHWALFPLFNFEKAREPILELFFNAGYINTIQANCPWILRY 275          
BLAST of FC878151 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEEL (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis elegans GN=eif-3.E PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.012e-45
Identity = 96/262 (36.64%), Postives = 163/262 (62.21%), Query Frame = 2
Query:   56 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYN-----LQMLHDRYQIGPDQIEALYQYAKFQFESGNYSGAADYLYQYRALCTNSE-RRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-NQDKYLNAIQTNAPHLLRY 820
            M+T+DLTQR+AP LD HL+ PLLEF++ R +Y ++ + +   +LL KTNM+D  ++     Y+ + +P  +  ++ +++     L+ +   +V+ L+ P   +++  N++  +     L+ L   +    D ++ L++Y+KF +E GNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  + D   F +    +  R WLMHW+LF+++N+  GR  II++F NQ  YLNAIQ  APHLLRY
Sbjct:    1 MSTFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIE----TYNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIP-EVKEMMDNNRERDGNVRILEHLTQNHNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYI-DANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRY 256          
BLAST of FC878151 vs. ExPASy Swiss-Prot
Match: EIF3E_MONBE (Eukaryotic translation initiation factor 3 subunit E OS=Monosiga brevicollis GN=13685 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.691e-41
Identity = 91/256 (35.55%), Postives = 146/256 (57.03%), Query Frame = 2
Query:   56 MATYDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFLQNPNSFQDLRANDQHYNLQMLHDRYQIGPDQIEALYQYAKFQFESGNYSGAADYLYQYRALCTNSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-NQDKYLNAIQTNAPHLLRY 820
            MA +DLTQ I  NLD HL+ PLL+   +  +Y +  + ++K+++L++T +++ A+++  +   TE   +D+  R   +    K  E++  P+    +N      + A     +L    + Y    +  + LY  +KF F+ G Y  A   LY YRA+ T+ + + +ALWGK+AA IL  NW  A E++  L E +D  K+  + + Q+Q R WL+HWSLF+FFN  +G   I+DLF N++   NA+QT APHL RY
Sbjct:    1 MAAHDLTQAICQNLDPHLILPLLDHCVDLDIYNEADLKRAKMQVLSRTRLIEQALELADA---TEK--KDLDARMRSISEEEKTWEKQLEPVFEMFENDEVLSIIEATKNKDSLLSELEPYGFTENTADLLYHGSKFYFDRGQYDLAHGLLYNYRAVSTDDKLKFTALWGKLAAAILSGNWQTAQEDMYLLLEYIDGGKNELTAVEQLQQRNWLLHWSLFVFFNQPDGPDGIVDLFMNKETCTNAMQTIAPHLFRY 251          
BLAST of FC878151 vs. ExPASy Swiss-Prot
Match: EIF3E_DICDI (Eukaryotic translation initiation factor 3 subunit E OS=Dictyostelium discoideum GN=eif3e PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.697e-33
Identity = 83/299 (27.76%), Postives = 158/299 (52.84%), Query Frame = 2
Query:   65 YDLTQRIAPNLDRHLVFPLLEFLQERQMYPDEQILKSKIELLNKTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKALEERAAPIVSFL----QNPNSFQDLRANDQHYNLQMLHDRY----------------------------------------QIGPDQIEALYQYAKFQFESGNYSGAADYLYQYRALCT---NSERRLSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLFNQDKYLNAIQTNAPHLLRY 820
            YDLT++I   LD H++ PL+ +L++ Q Y + +I K+  ++L++T   DYA++ ++S+   +  P  +  ++ E+V  L  L+E+ + +  ++    Q     ++L+   +    +   D+                                         +I P+ ++++Y+++K  FE G Y  A ++L  +  L     N ++RLSALWG + ++IL  NW  A+ +++ L++++D   S  +P+ Q+  R WL+H +LF++F +   R+ ++DL  +DKYLNAIQT  PH+LRY
Sbjct:    3 YDLTKQICSFLDAHMMLPLINYLKDTQQYQENEINKAMADILSQTGCCDYAINAYESIGR-DTAP--LQAKKQELVGELNKLKEQCSFVTQYIESKKQQKEQQKELKEQQKEQQKEKDTDKTTPTTTDETTTTTTTAPTTTTTTTTTTITPITVIPFSQLLEKITPEILDSIYRFSKLLFEIGQYGSAREHLEIFLQLSPTHQNKDKRLSALWGILESDILSLNWGQAVGDISPLQDQID---SNGTPVEQLGQRAWLIHRALFVYFYNPESRSSLVDLLLEDKYLNAIQTTCPHILRY 295          
BLAST of FC878151 vs. ExPASy Swiss-Prot
Match: EIF3E_CAEBR (Eukaryotic translation initiation factor 3 subunit E OS=Caenorhabditis briggsae GN=eif-3.E PE=3 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 6.435e-27
Identity = 60/132 (45.45%), Postives = 90/132 (68.18%), Query Frame = 2
Query:  431 DQIEALYQYAKFQFESGNYSGAADYLYQYRALCTNSERR-LSALWGKMAAEILMQNWDIALEELNQLKEKVDDPKSFTSPLNQMQSRIWLMHWSLFIFFNHDNGRTLIIDLF-NQDKYLNAIQTNAPHLLRY 820
            D ++ L++Y+KF +E GNY+ A+  LY YR L   ++   L+AL+GK+A+EIL+Q W+ A ++L +L+  +D    F +    +  R WLMHW+LF+++N+  GR  II++F NQ  YLNAIQ  APHLLRY
Sbjct:    5 DMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQADPNYLNALYGKLASEILLQEWEHARDDLLKLRAYID-ANPFDTEWELVTQRAWLMHWALFVYYNYPKGRDEIIEMFLNQQPYLNAIQVLAPHLLRY 135          
The following BLAST results are available for this feature:
BLAST of FC878151 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
EIF3E_CHAGB1.247e-4636.30Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEEL4.012e-4536.64Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_MONBE2.691e-4135.55Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_DICDI2.697e-3327.76Eukaryotic translation initiation factor 3 subunit... [more]
EIF3E_CAEBR6.435e-2745.45Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA30BA11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878151 ID=FC878151; Name=FC878151; organism=Citrus clementina; type=EST; length=822bp
CAGAACAGTAGCAGCAGACGCCGCTGCCGCCGACGAACAAAATTTGAACG
CGACAATGGCGACGTACGATTTGACGCAGAGAATCGCTCCGAATCTGGAC
CGGCATCTGGTGTTTCCGCTGCTGGAGTTTCTTCAAGAGCGGCAGATGTA
CCCGGACGAGCAGATTTTGAAATCGAAGATAGAGCTCTTGAACAAGACGA
ACATGGTCGACTACGCGATGGACATCCACAAGAGCCTCTACCACACCGAA
GACGTCCCGCAGGATATGGTCGAGCGGAGGGTCGAGGTCGTCGCTCGGTT
GAAGGCCCTGGAGGAGCGCGCCGCCCCGATCGTTTCGTTCTTGCAGAACC
CTAACTCCTTTCAAGATTTGAGAGCTAATGACCAGCACTACAATTTGCAG
ATGCTTCACGACCGTTACCAGATTGGCCCGGACCAGATCGAGGCGCTTTA
TCAGTATGCCAAATTTCAGTTTGAATCTGGGAACTACTCTGGGGCTGCTG
ACTATCTGTACCAGTACAGGGCCTTGTGCACAAACAGTGAAAGGAGGCTG
AGTGCATTATGGGGAAAAATGGCGGCTGAGATATTGATGCAGAATTGGGA
TATTGCTCTTGAAGAACTTAATCAATTAAAGGAAAAAGTTGATGACCCAA
AGAGTTTCACATCACCTTTAAATCAGATGCAAAGTAGGATATGGTTAATG
CATTGGAGTCTCTTCATCTTTTTCAATCATGATAATGGAAGAACACTGAT
CATTGACTTGTTCAATCAGGATAAGTATCTAAATGCCATTCAAACCAATG
CTCCCCATCTTTTACGCTATTT
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