FC878156

Overview
NameFC878156
Unique NameFC878156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length868
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13200 contig Ccv1_Contig13200:56..923. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_SULAC (Tryptophanyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=trpS PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.565e-45
Identity = 95/199 (47.74%), Postives = 134/199 (67.34%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAV 807
            V+PWEV   GK+DYDKLI +FG Q++   L +R +R      HV LRR VFF+HRD + IL+ YEKG  F+LYTGR PS   +H+GHL+PF+FTK+LQ+ FKV + I++TDDEK +   + ++++++  + EN  DIIA GFD  KTFIF D +Y+    Y   VK+AK +T+N+V   FG     +IG + +P +Q V
Sbjct:    7 VTPWEVK--GKVDYDKLIVQFGTQKMTSELKERAKRAINDELHVMLRRDVFFSHRDFDLILNDYEKGNGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFKVNVYIEITDDEKFLRNVDYTLDQTKEWSYENILDIIAVGFDPNKTFIFQDTEYIKN-MYPLSVKIAKKLTFNEVRATFGLDTSSNIGIIFYPALQIV 201          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_PYRFU (Tryptophanyl-tRNA synthetase OS=Pyrococcus furiosus GN=trpS PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.662e-44
Identity = 92/198 (46.46%), Postives = 132/198 (66.67%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQA 804
            V+PWEV   G IDY+KLI++FG   L   L++R  RLT     +F RR  FF+HRD + +LD YE+G+ F+LYTGRGPS   +H+GH++PF  TK+LQ+ F V L IQ+TDDEK ++K NL+ E+++  A +N  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGFT +  IG + FP +QA
Sbjct:    7 VTPWEVE--GIIDYNKLIEQFGTSPLTDDLLERTARLTKSELPIFFRRKFFFSHRDYDKVLDDYEQGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFDVNLYIQITDDEKFLFKENLTFEDTKYWAYQNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQA 199          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_SULSO (Tryptophanyl-tRNA synthetase OS=Sulfolobus solfataricus GN=trpS PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.838e-43
Identity = 92/197 (46.70%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ 801
            V+PWEV   GK+DYDKLI +FG Q++ + L  R++ L G   HV LRR VFF+HRDL+ +L+ YEK + F+LYTGR PS   +H+GHL+PF+FTK+LQ+ F   L I++TDDEK M     ++++++  A +N  DIIA GF+  KTFIF D +Y+    Y   VK+AK +T+++V   FG     +IG + +P +Q
Sbjct:    7 VTPWEVK--GKVDYDKLIVQFGTQKITEELKQRIKNLAG-DLHVMLRRNVFFSHRDLDLVLNDYEKSKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFNANLYIEITDDEKYMRNPEFTLDQTRSWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPITVKIAKKLTFSEVRATFGLDASSNIGLIFYPALQ 198          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_SULTO (Tryptophanyl-tRNA synthetase OS=Sulfolobus tokodaii GN=trpS PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.984e-43
Identity = 89/197 (45.18%), Postives = 133/197 (67.51%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ 801
            V+PWEV   GK+DYDKLI +FG Q++   L ++++ +     HV LRR VFF+HRDL+ +L  Y+ G+ F+LYTGR PS   +H+GHL+PF+FTK+LQD F V L I++TDDEK M     +++++++ A +N  DIIA GF+  KTFIF D +Y+    Y   +K+AK +T+++V   FG     +IG + +P +Q
Sbjct:    7 VTPWEVK--GKVDYDKLIVQFGTQKITSELKEKIKSIINDELHVMLRRDVFFSHRDLDLVLKDYQDGKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQDKFNVNLYIEITDDEKFMRNPEYTLDQTRQWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPIAIKIAKKLTFSEVRATFGLDTSSNIGIIWYPALQ 199          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_PYRHO (Tryptophanyl-tRNA synthetase OS=Pyrococcus horikoshii GN=trpS PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.556e-42
Identity = 89/197 (45.18%), Postives = 128/197 (64.97%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ 801
            V+PWEV   G +DYDKLI  FG   L + L+++   LT     +F RR  FF+HRD + IL  YE+G  F+LYTGRGPS   +H+GH++PF  TK+LQ+ F V L IQ+TDDEK ++K NL+ ++++R A +N  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q
Sbjct:    7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQ 198          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_PYRAB (Tryptophanyl-tRNA synthetase OS=Pyrococcus abyssi GN=trpS PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.556e-42
Identity = 88/197 (44.67%), Postives = 128/197 (64.97%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ 801
            V+PWEV   G +DY+KLI+ FG   L + L+++   LT     +F RR  FF+HRD + +L  YE+G  F+LYTGRGPS   +H+GH++PF  TK+LQ+ F V L IQ+TDDEK ++K NL+ E+++  A EN  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGFT +  IG + FP +Q
Sbjct:    7 VTPWEVE--GVVDYNKLIEHFGTSPLTEELLEKTAELTKSELPLFFRRKFFFSHRDYDKVLQDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFEDTKHWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQ 198          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_THESM (Tryptophanyl-tRNA synthetase OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=trpS PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.032e-42
Identity = 89/198 (44.95%), Postives = 130/198 (65.66%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQA 804
            V+PWEV+  G +DY+KLI++FG   L   L+ + + LT +   ++ +R  FF+HRD + +L  YE G+ F+LYTGRGPS   +H+GH++PF  TK+LQ+ F V L +Q+TDDEK ++K  L+ E ++R A EN  DIIA GFD  KTFIF D ++     Y+  + +AK VTY+    +FGF  +  IG + FP +QA
Sbjct:    6 VTPWEVT--GVVDYNKLIEEFGTTPLTDDLLKKTEELTKKELPMYFKRKFFFSHRDYDLVLKDYEAGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFGVNLYVQITDDEKFLFKPQLTFEGTKRWAYENILDIIAVGFDPDKTFIFQDSEFT--KIYEMAIPIAKKVTYSMAKAVFGFNEQSKIGMIFFPAIQA 198          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_PYRKO (Tryptophanyl-tRNA synthetase OS=Pyrococcus kodakaraensis GN=trpS PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.720e-41
Identity = 87/198 (43.94%), Postives = 127/198 (64.14%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQA 804
            V+PW+V   G +DY+KLI++FG   L   L+++   LT     +F RR  FF+HRD + +L  YE G  F+LYTGRGPS   +H+GH++PF  TK+LQ+ F V L IQ+TDDEK ++K  LS E+++R A EN  DIIA GFD  KTFIF + ++     Y+  + +AK + ++    +FGF  +  IG + +P +QA
Sbjct:    6 VTPWDVE--GVVDYNKLIEQFGTSPLTDELIEKTAELTKSELPLFFRRRFFFSHRDYDKVLADYESGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFDVNLYIQITDDEKFLFKEKLSFEDTKRWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMALPIAKKINFSMARAVFGFNEQSKIGMIFYPAIQA 198          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_THEON (Tryptophanyl-tRNA synthetase OS=Thermococcus onnurineus (strain NA1) GN=trpS PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.832e-41
Identity = 84/198 (42.42%), Postives = 130/198 (65.66%), Query Frame = 1
Query:  214 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQA 804
            V+PW+V   G +DY+KLI++FG   L   L+++  +LT     ++ RR  FF+HRD + +L  YE G+ F+LYTGRGPS   +H+GH++PF  TK+LQ+ F V L IQ+TDDEK ++K+ L+ E+++  A +N  DIIA GFD  +TFIF D ++     Y+  + +AK + ++    +FGFT +  IG + +P +QA
Sbjct:    6 VTPWDVE--GLVDYNKLIEEFGTSPLTDELLEKTAQLTKSELPLYFRRRFFFSHRDYDKVLQDYESGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKDKLTFEDTKYWAYQNILDIIAVGFDPDRTFIFQDSEFT--KIYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFYPAIQA 198          
BLAST of FC878156 vs. ExPASy Swiss-Prot
Match: SYW_PYRCJ (Tryptophanyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=trpS PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.474e-34
Identity = 83/198 (41.92%), Postives = 121/198 (61.11%), Query Frame = 1
Query:  211 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQ 801
            VV+PWEV   G++DY KL+ +FG + L Q+ V  +++  G   H  +RRG F+AHRDL+ IL  + +G+ + LYTGRGPS   +H+GH+VP++  K+L D F V +  Q+TDDEK      + +EE+ + A ENA D+IA GF   K  +  D   +    Y    KVAK +T+N V   FGFT   +IG + +P +Q
Sbjct:    6 VVTPWEVR--GRVDYQKLMQQFGARPLTQAEVSLLEKYAGEV-HPLIRRGFFYAHRDLDAILKWHGEGKPWALYTGRGPSG-PVHIGHMVPWILLKWLSDKFGVEVYFQMTDDEKFYDDPEMRLEEATKWAYENALDVIALGFTPDKLHLIIDTKDI-KPLYPIAAKVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQ 198          
The following BLAST results are available for this feature:
BLAST of FC878156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SYW_SULAC2.565e-4547.74Tryptophanyl-tRNA synthetase OS=Sulfolobus acidoca... [more]
SYW_PYRFU1.662e-4446.46Tryptophanyl-tRNA synthetase OS=Pyrococcus furiosu... [more]
SYW_SULSO1.838e-4346.70Tryptophanyl-tRNA synthetase OS=Sulfolobus solfata... [more]
SYW_SULTO6.984e-4345.18Tryptophanyl-tRNA synthetase OS=Sulfolobus tokodai... [more]
SYW_PYRHO1.556e-4245.18Tryptophanyl-tRNA synthetase OS=Pyrococcus horikos... [more]
SYW_PYRAB1.556e-4244.67Tryptophanyl-tRNA synthetase OS=Pyrococcus abyssi ... [more]
SYW_THESM2.032e-4244.95Tryptophanyl-tRNA synthetase OS=Thermococcus sibir... [more]
SYW_PYRKO1.720e-4143.94Tryptophanyl-tRNA synthetase OS=Pyrococcus kodakar... [more]
SYW_THEON3.832e-4142.42Tryptophanyl-tRNA synthetase OS=Thermococcus onnur... [more]
SYW_PYRCJ3.474e-3441.92Tryptophanyl-tRNA synthetase OS=Pyrobaculum calidi... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA30BA12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA30BA12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878156 ID=FC878156; Name=FC878156; organism=Citrus clementina; type=EST; length=868bp
CCGTTATTCCGTCTCCCTTAGTCCCGCGATTGTGGCCACGACGACTCGCC
GCTGAACCTTCGAATTTCAGCCAAGCGATCACCGTTGGCCTCGCCACTCT
GCTTGCTATTGGAGCTGGAGTACTTGGAAAAGTATTAAAGCATAAACAAG
CAGTCAGTCAAAGAGATGGATAAGAATGAAGAGAAGCAACGGGAAGAAGA
AAGAGAGCAAGTGGTGAGTCCATGGGAAGTCTCATCTTCAGGAAAAATAG
ATTACGACAAACTCATCGACAAATTTGGATGCCAGCGACTCGACCAGTCG
TTGGTAGACAGAGTCCAACGACTCACTGGCCGCCCTCCTCACGTCTTTCT
CCGCCGCGGTGTTTTCTTTGCCCACCGAGATTTGAACGATATACTGGATG
CGTATGAGAAAGGGGAGAAATTTTATCTGTACACGGGAAGAGGGCCATCA
TCAGAAGCTTTGCATTTGGGGCATTTGGTTCCTTTCATGTTTACCAAGTA
CTTGCAAGATGCCTTTAAGGTTCCTCTTGTTATACAACTGACTGATGATG
AGAAGTGCATGTGGAAAAATCTTTCTGTTGAGGAGAGTCAAAGACTTGCA
AGGGAAAATGCAAAAGACATAATTGCCTGTGGTTTTGATGTAACAAAGAC
CTTTATCTTCTCTGATTTTGATTATGTCGGTGGTGCCTTCTACAAGAACA
TGGTGAAGGTTGCGAAGTGTGTCACATATAACAAGGTGGTTGGCATATTT
GGCTTCACTGGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCAGTTCA
GGCGGTTCCATCATTTCCAAGTTCTTTCCCACACCTTTTCTCAGGCAAGG
ATCACCTTCGTTGCTTAA
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