FC878159

Overview
NameFC878159
Unique NameFC878159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length847
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_ECOLI (Geranyltranstransferase OS=Escherichia coli (strain K12) GN=ispA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.224e-13
Identity = 43/106 (40.57%), Postives = 56/106 (52.83%), Query Frame = 3
Query:  492 DFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            DF   +       NQAL   ++        + E+M+Y  L GGKR+RP L  A   + G   +     A ++E IH  SLIHDDLP MD+D LRRG PT H  +GE
Sbjct:    2 DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGE 107          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: IDSA_METJA (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanocaldococcus jannaschii GN=idsA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.211e-13
Identity = 42/103 (40.78%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  495 FKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            F   ++QK   +++ L   V   D  K++ + ++ L AGGKR+RP L +    L        +PAA ++E+IH  +LIHDD+  MDND  RRGKPT H +YGE
Sbjct:   13 FDKNILQK---IDEELKTYVDKDD--KLYNASKHLLFAGGKRIRPYLTVVTYMLKKDDIEEVLPAAAAVELIHNYTLIHDDI--MDNDDERRGKPTVHVVYGE 108          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: GGPS_SULSO (Geranylgeranyl pyrophosphate synthetase OS=Sulfolobus solfataricus GN=gds PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 9.381e-13
Identity = 34/76 (44.74%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  576 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            + E+  +   AGGKR+RP++ +++ DL+GG    A  AA ++E++H  +L+HDD+  MDND LRRG PT H  +GE
Sbjct:   32 LEEASFHLFTAGGKRLRPLVLVSSSDLIGGDRERAYKAAAAVEILHNFTLVHDDI--MDNDGLRRGLPTVHVKWGE 105          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: CRTE_PANAN (Geranylgeranyl pyrophosphate synthetase OS=Pantoea ananas GN=crtE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.600e-12
Identity = 37/76 (48.68%), Postives = 51/76 (67.11%), Query Frame = 3
Query:  585 SMRYSLLAGGKRVRPVLCLAACDLVG---GHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            +MR   LA GKR+RP+L L     +G    H+ + +  AC++EM+H  SLI DD+PCMD+  LRRG+PT H+ YGE
Sbjct:   43 AMREGALAPGKRIRPMLLLLTARDLGCAVSHDGL-LDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGE 117          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: IDSA_METTH (Bifunctional short chain isoprenyl diphosphate synthase OS=Methanobacterium thermoautotrophicum GN=idsA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.090e-12
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 3
Query:  531 NQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            ++ +  ++S   P  +  +  + + AGGK++RP L L + + VGG    A   A +IE+IHT SLIHDD+  MD+D +RRG+P  H ++GE
Sbjct:   16 DERIRESISDITPETLLRASEHLITAGGKKIRPSLALLSSEAVGGDPGDAAGVAAAIELIHTFSLIHDDI--MDDDEIRRGEPAVHVLWGE 104          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: CRTE_RHOS4 (Geranylgeranyl pyrophosphate synthetase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=crtE PE=3 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:  567 PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHE-SMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            P K+  ++ Y++  GG R+RP L L+     G    +++  AA ++E+IH  SL+HDDLPC D+  +RRGKPT H  Y E
Sbjct:   24 PSKLATALDYAVTPGGARIRPTLLLSVATACGDDRPALSDAAAVALELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSE 103          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: CRTE_ESCVU (Geranylgeranyl pyrophosphate synthetase OS=Escherichia vulneris GN=crtE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.730e-12
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 3
Query:  585 SMRYSLLAGGKRVRPVLCL-AACDL-VGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            +MR  ++A GKR+RP+L L AA DL   G     +  AC++E+ HT SL+ DD+PCMDN  LRRG+PT H  +GE
Sbjct:   42 AMREGVMAPGKRIRPLLMLLAARDLRYQGSMPTLLDLACAVELTHTASLMLDDMPCMDNAELRRGQPTTHKKFGE 116          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAP (Geranyltranstransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=ispA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.018e-11
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 3
Query:  576 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            +  +M+YS L+GGKR+R  L  A  +    + +     + ++E++H+ SLIHDDLPC+DND  RRGK + H  YGE
Sbjct:   32 LFRAMKYSTLSGGKRLRACLIYATGETFQVNIAALDVISAAVELVHSYSLIHDDLPCIDNDYFRRGKISCHIKYGE 107          
BLAST of FC878159 vs. ExPASy Swiss-Prot
Match: ISPA_BUCAI (Geranyltranstransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=ispA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.941e-11
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 3
Query:  582 ESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGE 803
            ++M+YS+ +G KR+R  L  +  D+   + +     + +IE IH+ SLIHDDLPCMDND  RRGK + H  YGE
Sbjct:   34 KAMKYSVFSGSKRLRSSLIYSTGDVFKVNITTLDVISTAIEFIHSYSLIHDDLPCMDNDNFRRGKISCHVKYGE 107          
The following BLAST results are available for this feature:
BLAST of FC878159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
ISPA_ECOLI3.224e-1340.57Geranyltranstransferase OS=Escherichia coli (strai... [more]
IDSA_METJA4.211e-1340.78Bifunctional short chain isoprenyl diphosphate syn... [more]
GGPS_SULSO9.381e-1344.74Geranylgeranyl pyrophosphate synthetase OS=Sulfolo... [more]
CRTE_PANAN1.600e-1248.68Geranylgeranyl pyrophosphate synthetase OS=Pantoea... [more]
IDSA_METTH2.090e-1239.56Bifunctional short chain isoprenyl diphosphate syn... [more]
CRTE_RHOS42.730e-1242.50Geranylgeranyl pyrophosphate synthetase OS=Rhodoba... [more]
CRTE_ESCVU2.730e-1250.67Geranylgeranyl pyrophosphate synthetase OS=Escheri... [more]
ISPA_BUCAP3.018e-1143.42Geranyltranstransferase OS=Buchnera aphidicola sub... [more]
ISPA_BUCAI3.941e-1145.95Geranyltranstransferase OS=Buchnera aphidicola sub... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG02RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878159 ID=FC878159; Name=FC878159; organism=Citrus clementina; type=EST; length=847bp
CCAAAATCCAAAGTTTTATCTTTGCCCGCTGTTGGTTGGCCTCCCTCCCT
CCACCGTGCATTTGCGGTTGCCGCTAAATTTCCATCTTTGGTCTAAAGAA
AAAAAAAAGGAAAATGGCTTTGTTTGGTAACATGGTACAATTTGGGCATT
TCTGTTTATGAGTCTCGAAGAAGAAGAAGGAATCGGGAGGATAAAGTGGG
AGAGGCTTACGGCTTGCCTGCCCAGATTGCGTATTCTCGGTTGTCAGTTC
TCGCACCAGTGTAATCTCCATTTCTTCTTGCCTTACCAAAATGAGTTGCG
TCAATCTTGCGGCATGGACTCAAACATGCTCAATCTTTAACCAAGCTAGC
AGTCGCAGATCTAACAAAACTCAGCCGTTCCGTACGCTTACAACACTGCC
CGTTTCCTTGGCTTCACAGAGACCAAGGCGCCCCGTTTCGATCTCCGCAG
TTCAAACTCTCGAGGAAAACCCCGCCCCAAGCCCCACTTTCGATTTCAAG
TCCTACATGATCCAAAAAGCAAGTACCGTCAACCAAGCCTTAGACGCCGC
CGTTTCGCTCAAGGACCCCGTGAAGATCCACGAATCCATGCGATACTCTT
TACTGGCGGGCGGCAAGCGGGTGCGCCCTGTGCTCTGCCTCGCCGCTTGT
GACCTCGTTGGTGGCCACGAGTCCATGGCCATGCCAGCTGCATGCTCTAT
CGAGATGATCCACACCATGTCCTTAATTCACGACGATTTGCCTTGCATGG
ATAACGACCCTCTACGTCGAGGGAAGCCCACGAACCACACGATCTACGGC
GAAGACGTCGCCGTTTTGGCCGGCGATGCGCTTTTGGCCTATGCTTT
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