FC878163
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 7.408e-38 Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 1 Query: 73 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435 K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG R K+KY+ +LRK PS G HFRAP++IF + VRGM+PHKT EG+P P+DK KR+V+P AL+ Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALR 126 HSP 2 Score: 43.1282 bits (100), Expect = 7.408e-38 Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 3 Query: 504 LVFTFWVRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611 LV +RVLRL+ KYC +GRL+SEVGW Y + + Sbjct: 119 LVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIV 154
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 9.648e-38 Identity = 67/123 (54.47%), Postives = 83/123 (67.48%), Query Frame = 1 Query: 61 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDA 429 G+ + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG R K+KYM FLRKR N P+ G H+RAP KIFWRTVRGM+PHKT YEGVPA Y K K + P A Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSA 124 HSP 2 Score: 36.1946 bits (82), Expect = 9.648e-38 Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 3 Query: 534 RLQKGHKYCLLGRLASEVGWNYYDTI 611 RLQ K+C++GRL+ EVGW + D + Sbjct: 128 RLQPRRKFCVVGRLSHEVGWQFQDVV 153
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2) HSP 1 Score: 156.762 bits (395), Expect = 1.230e-37 Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 1 Query: 79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK*VLL 447 +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT ++G+P PYDK KRMV+P ALK V L Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRL 125
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1) HSP 1 Score: 144.05 bits (362), Expect = 3.627e-37 Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 1 Query: 73 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK*VLL 447 K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+ FL MNT + G H R+P+KIFWR VRGM+PHKT +EGVPAPYDKVKR+V+P AL+ V L Sbjct: 5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKL 129 HSP 2 Score: 32.7278 bits (73), Expect = 3.627e-37 Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 3 Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNY 599 +RV++L KY +L RL+ EVGW Y Sbjct: 124 LRVVKLNTTRKYTVLSRLSQEVGWKY 149
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3) HSP 1 Score: 132.494 bits (332), Expect = 6.640e-36 Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1 Query: 79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435 VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG R K+KY FLRK + GP HFRAP++IF++ +RGM+ HKT +EG+P PYDK KR+V+P AL+ Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALR 125 HSP 2 Score: 40.0466 bits (92), Expect = 6.640e-36 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611 +RVLRL+ G KY LG+L++ VGW Y D + Sbjct: 124 LRVLRLKPGRKYTTLGKLSTSVGWKYEDVV 153
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3) HSP 1 Score: 128.642 bits (322), Expect = 9.339e-35 Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = 1 Query: 79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435 VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG R K+KY FLRK + GP HFRAP++I ++ +RGM+ HKT +EG+P PYDK KR+V+P AL+ Sbjct: 6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALR 124 HSP 2 Score: 40.0466 bits (92), Expect = 9.339e-35 Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 3 Query: 522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611 +RVLRL+ G KY LG+L++ VGW Y D + Sbjct: 123 LRVLRLKPGRKYTTLGKLSTSVGWKYEDVV 152
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12 Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1 Query: 79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDA 429 ++++ H+LGRLAS+V+K+LL G++V+ + E+I ++G KY + + + + P GP + R P IF RTVRGM+P+K Y G+P + + + IPDA Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA 121
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11 Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 1 Query: 82 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDAL 432 V+DA H+LGRL+S +AK LLNG+++V V E+ ++G + M + R+ K GP R P +IF RTVRGM+P K+ + GVP + I DAL Sbjct: 18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL 131
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11 Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 1 Query: 73 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDA 429 K V+DA+ +LGRLAS VAK+LL+G +KV + E+ +SG +Y R R+R T+ GP + P +I RT+RGM+P+K Y GVP + + IPDA Sbjct: 3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA 119 The following BLAST results are available for this feature:
BLAST of FC878163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 29
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878163 ID=FC878163; Name=FC878163; organism=Citrus clementina; type=EST; length=763bpback to top |