FC878163

Overview
NameFC878163
Unique NameFC878163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length763
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878163_ssr25 microsatellite FC878163_ssr25:25..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6483 contig Ccv1_Contig6483:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL16C_SCHPO (60S ribosomal protein L16-C OS=Schizosaccharomyces pombe GN=rpl16c PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 7.408e-38
Identity = 64/121 (52.89%), Postives = 84/121 (69.42%), Query Frame = 1
Query:   73 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
            K V++DA+ H++GRLAS VAK+LL GQKVV VRCEE+ +SG   R K+KY+ +LRK     PS G  HFRAP++IF + VRGM+PHKT             EG+P P+DK KR+V+P AL+
Sbjct:    6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRYNPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAALR 126          

HSP 2 Score: 43.1282 bits (100), Expect = 7.408e-38
Identity = 19/36 (52.78%), Postives = 25/36 (69.44%), Query Frame = 3
Query:  504 LVFTFWVRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611
            LV    +RVLRL+   KYC +GRL+SEVGW Y + +
Sbjct:  119 LVVPAALRVLRLKPSRKYCTIGRLSSEVGWKYKNIV 154          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.648e-38
Identity = 67/123 (54.47%), Postives = 83/123 (67.48%), Query Frame = 1
Query:   61 GICAKRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDA 429
            G+  + +++D ++H+LGRLASIVAK+LL G KVV +R EEI +SG   R K+KYM FLRKR N  P+ G  H+RAP KIFWRTVRGM+PHKT            YEGVPA Y K K +  P A
Sbjct:    2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSA 124          

HSP 2 Score: 36.1946 bits (82), Expect = 9.648e-38
Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 3
Query:  534 RLQKGHKYCLLGRLASEVGWNYYDTI 611
            RLQ   K+C++GRL+ EVGW + D +
Sbjct:  128 RLQPRRKFCVVGRLSHEVGWQFQDVV 153          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.230e-37
Identity = 75/123 (60.98%), Postives = 92/123 (74.80%), Query Frame = 1
Query:   79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK*VLL 447
            +V+D R H+LGRLA+IVAK++L G+KVV VRCE I +SG   R K+KY+ FLRKRMNT PS GP HFRAP++IFWRTVRGM+PHKT            ++G+P PYDK KRMV+P ALK V L
Sbjct:    3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRL 125          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.627e-37
Identity = 70/125 (56.00%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   73 KRVVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK*VLL 447
            K +V+D + H+LGRLAS+VAK LL+GQK+V VRCEE+ +SG L R K+K+  FL   MNT  + G  H R+P+KIFWR VRGM+PHKT            +EGVPAPYDKVKR+V+P AL+ V L
Sbjct:    5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKL 129          

HSP 2 Score: 32.7278 bits (73), Expect = 3.627e-37
Identity = 13/26 (50.00%), Postives = 18/26 (69.23%), Query Frame = 3
Query:  522 VRVLRLQKGHKYCLLGRLASEVGWNY 599
            +RV++L    KY +L RL+ EVGW Y
Sbjct:  124 LRVVKLNTTRKYTVLSRLSQEVGWKY 149          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 6.640e-36
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
            VV+D + H++GRLAS+VAK+LLNGQK+V VR EE+ +SG   R K+KY  FLRK      + GP HFRAP++IF++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+
Sbjct:    7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALR 125          

HSP 2 Score: 40.0466 bits (92), Expect = 6.640e-36
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611
            +RVLRL+ G KY  LG+L++ VGW Y D +
Sbjct:  124 LRVLRLKPGRKYTTLGKLSTSVGWKYEDVV 153          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL16B_YEAST (60S ribosomal protein L16-B OS=Saccharomyces cerevisiae GN=RPL16B PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 9.339e-35
Identity = 59/119 (49.58%), Postives = 81/119 (68.07%), Query Frame = 1
Query:   79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDALK 435
            VV+DA+ H+LGRLAS +AK++LNGQK+V VR E + +SG   R K+KY  FLRK      + GP HFRAP++I ++ +RGM+ HKT            +EG+P PYDK KR+V+P AL+
Sbjct:    6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALR 124          

HSP 2 Score: 40.0466 bits (92), Expect = 9.339e-35
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 3
Query:  522 VRVLRLQKGHKYCLLGRLASEVGWNYYDTI 611
            +RVLRL+ G KY  LG+L++ VGW Y D +
Sbjct:  123 LRVLRLKPGRKYTTLGKLSTSVGWKYEDVV 152          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 40/118 (33.90%), Postives = 66/118 (55.93%), Query Frame = 1
Query:   79 VVVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSH-GPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDA 429
            ++++   H+LGRLAS+V+K+LL G++V+ +  E+I ++G       KY + + +   + P   GP + R P  IF RTVRGM+P+K             Y G+P  +   + + IPDA
Sbjct:    4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNPRRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA 121          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13_ARCFU (50S ribosomal protein L13P OS=Archaeoglobus fulgidus GN=rpl13p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.514e-11
Identity = 43/117 (36.75%), Postives = 61/117 (52.14%), Query Frame = 1
Query:   82 VVDARHHMLGRLASIVAKELLNGQKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDAL 432
            V+DA  H+LGRL+S +AK LLNG+++V V  E+  ++G    + M + R+  K        GP   R P +IF RTVRGM+P K+            + GVP      +   I DAL
Sbjct:   18 VIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSKEKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL 131          
BLAST of FC878163 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.813e-11
Identity = 45/120 (37.50%), Postives = 64/120 (53.33%), Query Frame = 1
Query:   73 KRVVVDARHHMLGRLASIVAKELLNG-QKVVAVRCEEICMSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPAKIFWRTVRGMIPHKTXXXXXXXXXXXXYEGVPAPYDKVKRMVIPDA 429
            K  V+DA+  +LGRLAS VAK+LL+G +KV  +  E+  +SG       +Y R  R+R  T+   GP   + P +I  RT+RGM+P+K             Y GVP      + + IPDA
Sbjct:    3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGATE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA 119          
The following BLAST results are available for this feature:
BLAST of FC878163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL16C_SCHPO7.408e-3852.8960S ribosomal protein L16-C OS=Schizosaccharomyces... [more]
RL13A_CAEEL9.648e-3854.4760S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL13A_PIG1.230e-3760.9860S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
RL13A_DICDI3.627e-3756.0060S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL16A_YEAST6.640e-3651.2660S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
RL16B_YEAST9.339e-3549.5860S ribosomal protein L16-B OS=Saccharomyces cerev... [more]
RLSX_METTH1.048e-1233.90Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RL13_ARCFU1.514e-1136.7550S ribosomal protein L13P OS=Archaeoglobus fulgid... [more]
RL13_METAC9.813e-1137.5050S ribosomal protein L13P OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA64AE11RM1 IVIA1 Citrus clementina cDNA clone IC0AAA64AE11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878163 ID=FC878163; Name=FC878163; organism=Citrus clementina; type=EST; length=763bp
AGGGAGAGAAAAAGCCAACAAAATAGAGAGAGAGGAACCCTAATAATGGT
GTCGGGATCGGGAATCTGCGCGAAGCGAGTGGTGGTGGACGCACGCCACC
ACATGCTGGGGCGGCTGGCGTCGATCGTGGCCAAGGAGCTCCTCAACGGA
CAGAAAGTCGTCGCGGTCCGCTGCGAAGAGATTTGCATGTCCGGCGGCCT
CGTCCGCCAGAAAATGAAGTACATGCGGTTCCTTCGCAAGCGCATGAACA
CCAAGCCTTCTCACGGTCCCATCCACTTCCGCGCCCCTGCCAAGATCTTC
TGGCGCACCGTCCGCGGGATGATACCGCATAAGACCAAGCGTGGAGCTGC
AGCACTTGCTCGATTGAAGGCATATGAAGGGGTCCCTGCACCTTATGACA
AGGTGAAGAGAATGGTTATCCCCGACGCTCTCAAGTGAGTTCTCCTTGTC
TGAACTAATTCAATATTTTCTATTTTCACTTGGTGATTACTTAATGGCAT
TGACTGGTTTTCACCTTTTGGGTCAGGGTTTTGAGGCTTCAGAAGGGTCA
CAAGTACTGCTTGTTAGGTCGCCTGGCATCTGAGGTTGGATGGAATTATT
ATGACACCATCAGGGTAGGTTTTTCTAGCTCTTGTTTCATTACTATACTG
TGTTTTCTTTTTCCTTGTTCACATTGATTCACAATGGGATGAGTGTTTGT
GATGAACTCCTGGCATAGTGGCATTAAGATATTGATATGACATGTGGTAA
GCCTATTGATGGG
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