FC878164

Overview
NameFC878164
Unique NameFC878164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRU0 (Threonyl-tRNA synthetase OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 97/234 (41.45%), Postives = 140/234 (59.83%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKT-ITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            I IT PDG+V+E +   T+  DIAQ IS SLA  AL    NG L D  RP++ D  +++ T D ++      HS+AH+  QA ++ +    L +GP     EGFYYD       ++ +    I++E  K  KE  P  R EVT+++ALE+F D+ +K+E+IN+   D   +T+YR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QRVYG ++ DKK +K Y+
Sbjct:    2 INITFPDGAVREFESGITT-FDIAQSISNSLAKKALAGKFNGQLIDTNRPIDTDGSIEIVTPDHEDAFGVLRHSAAHLFAQAAKRLFPDIHLGVGPAIA--EGFYYDTDNSSGQISNEDLPRIEAEMQKIVKENYPCIREEVTKEEALEIFKDDPYKIELINEHSDDAAGLTIYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNAMMQRVYGTAWFDKKDLKAYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRPZ (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRPM (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M28 GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRPG (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRPF (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRPD (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPCIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRPC (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRPB (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRP8 (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M18 GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRP1 (Threonyl-tRNA synthetase OS=Streptococcus pyogenes serotype M1 GN=thrS PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 5.262e-44
Identity = 98/233 (42.06%), Postives = 141/233 (60.52%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDG+V+E +   T+  DIA+ ISKSLA  AL    N  L D TR +E D  +++ T D  +  +   HS+AH+  QA ++ +    L +GP     EGFYYD    +  ++ +    I++E  K   E  P  R EVT+++ALE+F D+ +KVE+IN+  A   +TVYR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y+
Sbjct:    2 IKITFPDGAVREFESGVTT-FDIAESISKSLAKKALAGKFNDQLIDTTRAIEEDGSIEIVTPDHKDAYEVLRHSAAHLFAQAAKRLFPNLHLGVGPAIA--EGFYYDTDNAEGQISNEDLPRIEAEMQKIVTENYPCIREEVTKEEALELFKDDPYKVELINE-HAGAGLTVYRQGEFVDLCRGPHVPSTGRIQVFHLLNVAGAYWRGNSDNNMMQRIYGTAWFDKKDLKAYL 230          
The following BLAST results are available for this feature:
BLAST of FC878164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_STRU05.262e-4441.45Threonyl-tRNA synthetase OS=Streptococcus uberis (... [more]
SYT_STRPZ5.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRPM5.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRPG5.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRPF5.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRPD5.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRPC5.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRPB5.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRP85.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]
SYT_STRP15.262e-4442.06Threonyl-tRNA synthetase OS=Streptococcus pyogenes... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878164 ID=FC878164; Name=FC878164; organism=Citrus clementina; type=EST; length=922bp
CGCTTACATTCAACTGCCGCCGTATTTCCTCTCAACTCTTTCGCTGTCAA
AACACTAAACCCTCCTCCGCCACCAATCTCCGCCGCATCCGCGCGATGCC
GTCTCCAAATCAAGTCAAAGACGAAGAGTATCTCAACAAAGTCATTCCCA
AACGTATCAGTCTCTTCCAGTCTCTTCAGTCCGAACAACAAGCCCGCCTC
CAGTCTCTCCCCCATGATCCCATCAAGATTACTCTGCCCGATGGGTCTGT
GAAAGAAGGCAAGAGATGGGAGACTTCGCCCATGGATATTGCTCAGGGAA
TTTCGAAGAGTTTGGCGGCCAATGCTTTGATTTCCATGGTGAATGGTGTT
TTGTGGGACATGACTAGGCCCTTAGAGGCCGATTGTGACCTCAAGTTATT
CACTTTTGATTCTGACGAAGGCCGTGATACTTTCTGGCACTCTAGTGCCC
ACATTCTAGGACAGGCAATTGAGCAGCAGTATGGTTGTAAGTTGTGTATT
GGTCCATGCACAACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGG
GGACTTGGGCTTGAATCCAGATCACTTCAAGTCAATTGATTCAGAAGCAG
ATAAAGCTGCCAAGGAAAAGCAGCCTTTTGAGCGCATTGAAGTTACAAGA
GATCAGGCTCTTGAGATGTTTTCCGACAACAATTTTAAGGTTGAAATAAT
CAATGATCTGCCTGCTGACAAAACTATCACAGTGTACAGATGTGGTCCCT
TGGTTGATTTGTGTCGTGGACCTCATATACCAAATACATCATTTGTGAAA
GGATTTGGGTGTTTGAAGGCTTCATCGGCTTATTGGAGGGGGAACAAGGA
TCGTGAGAGTTTACAGAGAGTTTATGGGATATCATACCCTGATAAAAAAA
CGGTGAAGGAATATATTGAACT
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