FC878164

Overview
NameFC878164
Unique NameFC878164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length922
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10860 contig Ccv1_Contig10860:72..993. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_BACV8 (Threonyl-tRNA synthetase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=thrS PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 9.287e-41
Identity = 88/235 (37.45%), Postives = 140/235 (59.57%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKIT PDGSV+E     T  + IA+ IS  LA + L   VNG   D++RP+  D +  L+ ++ ++G+  FWH+SAH+L +A+++ Y G +  IGP    G  FYYD   G+  +      +I+++  + A +K+   R  + ++ AL+ F +    +K E+I++L  D  IT Y  G   DLCRGPH+ +T+ +K    L  + AYWRG +DR+ + R+YGI++P KK + EY+
Sbjct:    2 IKITFPDGSVREYNEGVTG-LQIAESISSRLAQDVLACGVNGETIDLSRPINEDANFVLYKWEDEQGKHAFWHTSAHLLAEALQELYPGIQFGIGPAIENG--FYYDVDPGEAIIKEADLPAIEAKMAELAAKKEILVRQSIAKEDALKKFGERGETYKCELISELE-DGHITTYTQGAFTDLCRGPHLTSTAPIKAIKLLTVAGAYWRGQEDRKQMTRIYGITFPKKKMLDEYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRSV (Threonyl-tRNA synthetase OS=Streptococcus sanguinis (strain SK36) GN=thrS PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.069e-40
Identity = 94/235 (40.00%), Postives = 139/235 (59.15%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKT-ITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKIT PDG+V+E +   T+  +IAQ IS SLA  AL    NG L D TR +  D  +++ T D ++  D   HS+AH+  QA  + +    L +GP     +GFYYD       ++ +    I+ E  K  KE  P  R EVT+D+A E+F ++ +K+E+I +   D+  +T+YR    VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QRVYG ++ DKK +K+Y++
Sbjct:    2 IKITFPDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNGKLIDTTRAITEDGAIEIVTPDHEDALDILRHSAAHLFAQAARRLFPDIHLGVGPAIQ--DGFYYDTDNEAGQISNEDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEEHSEDEGGLTIYRQSEYVDLCRGPHVPSTGRIQIFHLLNVAGAYWRGNSDNAMMQRVYGTAWFDKKDLKKYLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_PSYA2 (Threonyl-tRNA synthetase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=thrS PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.069e-40
Identity = 90/236 (38.14%), Postives = 137/236 (58.05%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDN--NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            + ITLPDGSVK  +   T+ M++AQ I   LA   +   V+G L D   P+ AD  +++ T   D+G D   HS AH+LG A++Q Y   K+ IGP     +GFYYD  Y +    P+H  +I+    +  K+     +    R + +++F +   ++K+++IND+P ++   +Y     VD+CRGPH+PNT F+K F   K S AYWRG+   E LQR+YG ++ DKK +K YI+
Sbjct:    2 VAITLPDGSVKNFEG-NTTVMEVAQSIGTGLAKATVAGRVDGHLVDAHDPIVADAKVEIVTPRDDDGVDIIRHSCAHLLGHAVKQLYPDVKMVIGPVID--DGFYYD-IYSETPFTPEHMAAIEKRMMELIKQDYDVIKKITPRAEVIKIFEERGEDYKLKLINDMPGEEAFGLYHHQEYVDMCRGPHVPNTRFLKVFKLTKMSGAYWRGDAKNEQLQRIYGTAWADKKDLKTYIQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_ALHEH (Threonyl-tRNA synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=thrS PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.069e-40
Identity = 92/233 (39.48%), Postives = 136/233 (58.37%), Query Frame = 3
Query:  228 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            ITLPDGS +E      +  D+A+ I K LA  AL   V+G L D++  ++ D  L++ T    +G D   HS+AH++ QA+++ +   ++ IGP    G  FYYD  Y       D  K+I+ + ++ A++     R    RD+A+  F +    +K EII DLP  +TI+VY+ G  +DLCRGPH+PNT  +K F   K + AYWRG  D E LQR+YG ++PDKK +K Y+
Sbjct:    4 ITLPDGSRREFDH-PVTVRDVAESIGKGLARAALAGRVDGRLVDLSHRIDDDVQLEIVTDRDPDGVDMIRHSTAHLMAQAVKELFPEAQVTIGPVIENG--FYYDFAY-KRPFTEDDLKAIEKKMEELARQDFEVHREVWDRDEAIRFFLEQGEQYKAEIIEDLPEHETISVYKQGDFLDLCRGPHVPNTGKLKAFKLQKVAGAYWRGKSDNEMLQRIYGTAWPDKKQLKAYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_SYMTH (Threonyl-tRNA synthetase OS=Symbiobacterium thermophilum GN=thrS PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.702e-40
Identity = 91/235 (38.72%), Postives = 140/235 (59.57%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDN--NFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            + +TLPDGSV+E  +  T    +AQ I   LA  AL + V+G L D++  LE DC L++ TF  +EGR+ F H+S HI+ QA+++ +   KL +GP       FYYD F     L P+  + I++E  K  +   P  R EV R++A   F++   ++KV +++ +P D+ +++Y  G   DLC GPH+P+T  VK F  L  + AYW GN+  + LQRVYG S+  KK +++Y+
Sbjct:    5 VHVTLPDGSVREYPQGITIAEAVAQ-IGPRLAKAALAAKVDGRLVDLSARLEKDCTLQVLTFKDEEGREVFRHTSTHIMAQAVKRLFPEAKLTVGPPLENS--FYYD-FDLPRPLTPEDLEKIEAEMAKIVEADYPIVRQEVDREEAKRFFAERGEDYKVLLVDKIPEDEVVSIYTQGEFTDLCVGPHLPSTGRVKAFKLLSVAGAYWEGNQANKQLQRVYGTSFESKKDLEDYL 235          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT2_BACSU (Threonyl-tRNA synthetase 2 OS=Bacillus subtilis GN=thrZ PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.702e-40
Identity = 92/235 (39.15%), Postives = 135/235 (57.45%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFS--DNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            + I LPDG ++E  +  T   + A  IS SL   A    VNG L D++  LE D +L + T DS EG     H++AH+L QA+++ YG   L +GP     +GFYYD   G   L     ++I+ E      E    +RIEV+ ++A E+F+  D   K+EI+ D+P  + IT+Y+ G  VDLCRGPH+P+T  +K F   + S AYWRG+   E LQRVYG+++  KK +  ++
Sbjct:    5 VHIQLPDGQIQEYPKGITIK-EAAGSISSSLQKKAAAGQVNGKLVDLSFKLEEDAELSIVTLDSQEGLQVLRHTTAHVLAQAVKRLYGEVSLGVGPVIL--DGFYYDMKLGK-SLASGDLEAIEKEMKNIINENLEIKRIEVSYEEAEELFAQKDERLKLEILKDIPRGEDITLYQQGEFVDLCRGPHLPSTGMIKAFKLTRVSGAYWRGDSKNEVLQRVYGVAFQKKKDLDAHL 235          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_STRGC (Threonyl-tRNA synthetase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=thrS PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.529e-40
Identity = 93/235 (39.57%), Postives = 138/235 (58.72%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKT-ITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            IKIT PDG+V+E +   T+  +IAQ IS SLA  AL    NG L D TR +  D  +++ T D ++      HS+AH+  QA  + +    L +GP     +GFYYD       ++ +    I+ E  K  KE  P  R EVT+D+A E+F ++ +K+E+I +   D+  +T+YR G  VDLCRGPH+P+T  ++ F  L  + AYWRGN D   +QR+YG ++ DKK +K Y++
Sbjct:    2 IKITFPDGAVREFESGVTT-FEIAQSISNSLAKKALAGKFNGKLIDTTRAITEDGSIEIVTPDHEDALPILRHSAAHLFAQAARRLFPDIHLGVGPAIE--DGFYYDTDNTAGQISNEDLPRIEEEMKKIVKENFPSIREEVTKDEAREIFKNDPYKLELIEEHSEDEGGLTIYRQGEYVDLCRGPHVPSTGRIQIFHLLHVAGAYWRGNSDNAMMQRIYGTAWFDKKDLKNYLQ 233          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_EXISA (Threonyl-tRNA synthetase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=thrS PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.609e-40
Identity = 93/238 (39.08%), Postives = 141/238 (59.24%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG----CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSD--NNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            I++T PDG+VKE +   T+  D+A  IS  L   A+ + ++G L D  RP+E D  ++L   DS++G D   HSSAH++ QAI++ YG      L IGP  T   GFYYD    D  +N +    I+    +   E     R  V+RD+AL  + +  +  K+E+I D+PAD+T+T+Y  G   DLCRGPH+P+TS +K F  +  + AYWRG+ D + LQR+YG ++  K+ + E++
Sbjct:    4 IQLTFPDGAVKEFEAGVTAE-DVAGSISPGLRKKAIAAKLDGELIDYRRPIEHDGKIELVMPDSEDGLDLMRHSSAHLMAQAIKRLYGEDNNIYLGIGP--TIENGFYYDIEM-DRRINEEDLPEIEKMMKRIVDENLEITREVVSRDEALARYKELGDPLKIELIEDIPADQTLTIYHQGEFFDLCRGPHVPSTSKLKIFKLMSVAGAYWRGDSDNKMLQRIYGTAWATKEQLAEHL 237          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLONN (Threonyl-tRNA synthetase OS=Clostridium novyi (strain NT) GN=thrS PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.609e-40
Identity = 91/235 (38.72%), Postives = 136/235 (57.87%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYI 917
            IKITL DG V E ++  T   +IA  IS SL   AL + +NG   ++   +  D  L++ TF+  EG+DT  H+++HIL QA+++ Y   KL IGP    G  FYYD F  +    P+  + I+ E +K  KE    ++   +R+ A+    + N  +KVE+I DLP +  I+ Y  G  VDLC GPH+P+T  VK    L  + AYWRGN++ + LQR+YG ++  K  ++EY+
Sbjct:    2 IKITLKDGKVLEVEKGLTVS-EIAARISTSLRKKALGAKINGEKAELMDVINEDSTLEILTFEDQEGKDTLRHTASHILAQAVKRLYPEVKLAIGPSIENG--FYYD-FDAEFSFTPEILEKIEKEMNKIVKENLQLKKFTKSREDAINFMKERNEDYKVELIEDLPEESIISFYEQGDFVDLCAGPHVPSTKEVKAIKLLSVAGAYWRGNENNKMLQRIYGTAFTKKAELEEYL 232          
BLAST of FC878164 vs. ExPASy Swiss-Prot
Match: SYT_CLOTE (Threonyl-tRNA synthetase OS=Clostridium tetani GN=thrS PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 6.020e-40
Identity = 90/236 (38.14%), Postives = 139/236 (58.90%), Query Frame = 3
Query:  222 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKEKQPFERIEVTRDQALEMFSDNN--FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKTVKEYIE 920
            I ITL DG V E ++      DI   IS +L   A+ + +NG + ++   ++ D +L++ TFD +EGR T  H+S+HIL QA+++ Y   KL IGP    G  FYYD F  D    P+  + I+ E  K  KE    ER E+ R++A+++  D +  +KVE+I DLP  + I+ Y+ G  VDLC GPH+P+T  +K    L  + AYWRG++  + LQR+YG ++  K  ++ Y++
Sbjct:    2 INITLKDGKVIEVEKG-VKVSDIVMKISPALYKKAVGAKINGEIAELMTEIKEDSELEILTFDDEEGRKTVRHTSSHILAQAVKRLYPEAKLAIGPAIDNG--FYYD-FDIDFTFTPEMLEKIEKEMAKIVKENLEIERFELPREEAIKLVKDASEPYKVELIEDLPEGEVISFYKQGDFVDLCAGPHLPSTGKIKAIKLLSVAGAYWRGDEKNKMLQRIYGTAFLKKSELEAYLK 233          
The following BLAST results are available for this feature:
BLAST of FC878164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SYT_BACV89.287e-4137.45Threonyl-tRNA synthetase OS=Bacteroides vulgatus (... [more]
SYT_STRSV2.069e-4040.00Threonyl-tRNA synthetase OS=Streptococcus sanguini... [more]
SYT_PSYA22.069e-4038.14Threonyl-tRNA synthetase OS=Psychrobacter arcticus... [more]
SYT_ALHEH2.069e-4039.48Threonyl-tRNA synthetase OS=Alkalilimnicola ehrlic... [more]
SYT_SYMTH2.702e-4038.72Threonyl-tRNA synthetase OS=Symbiobacterium thermo... [more]
SYT2_BACSU2.702e-4039.15Threonyl-tRNA synthetase 2 OS=Bacillus subtilis GN... [more]
SYT_STRGC3.529e-4039.57Threonyl-tRNA synthetase OS=Streptococcus gordonii... [more]
SYT_EXISA4.609e-4039.08Threonyl-tRNA synthetase OS=Exiguobacterium sp. (s... [more]
SYT_CLONN4.609e-4038.72Threonyl-tRNA synthetase OS=Clostridium novyi (str... [more]
SYT_CLOTE6.020e-4038.14Threonyl-tRNA synthetase OS=Clostridium tetani GN=... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG03RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878164 ID=FC878164; Name=FC878164; organism=Citrus clementina; type=EST; length=922bp
CGCTTACATTCAACTGCCGCCGTATTTCCTCTCAACTCTTTCGCTGTCAA
AACACTAAACCCTCCTCCGCCACCAATCTCCGCCGCATCCGCGCGATGCC
GTCTCCAAATCAAGTCAAAGACGAAGAGTATCTCAACAAAGTCATTCCCA
AACGTATCAGTCTCTTCCAGTCTCTTCAGTCCGAACAACAAGCCCGCCTC
CAGTCTCTCCCCCATGATCCCATCAAGATTACTCTGCCCGATGGGTCTGT
GAAAGAAGGCAAGAGATGGGAGACTTCGCCCATGGATATTGCTCAGGGAA
TTTCGAAGAGTTTGGCGGCCAATGCTTTGATTTCCATGGTGAATGGTGTT
TTGTGGGACATGACTAGGCCCTTAGAGGCCGATTGTGACCTCAAGTTATT
CACTTTTGATTCTGACGAAGGCCGTGATACTTTCTGGCACTCTAGTGCCC
ACATTCTAGGACAGGCAATTGAGCAGCAGTATGGTTGTAAGTTGTGTATT
GGTCCATGCACAACAAGAGGAGAGGGTTTCTATTATGATGCATTTTATGG
GGACTTGGGCTTGAATCCAGATCACTTCAAGTCAATTGATTCAGAAGCAG
ATAAAGCTGCCAAGGAAAAGCAGCCTTTTGAGCGCATTGAAGTTACAAGA
GATCAGGCTCTTGAGATGTTTTCCGACAACAATTTTAAGGTTGAAATAAT
CAATGATCTGCCTGCTGACAAAACTATCACAGTGTACAGATGTGGTCCCT
TGGTTGATTTGTGTCGTGGACCTCATATACCAAATACATCATTTGTGAAA
GGATTTGGGTGTTTGAAGGCTTCATCGGCTTATTGGAGGGGGAACAAGGA
TCGTGAGAGTTTACAGAGAGTTTATGGGATATCATACCCTGATAAAAAAA
CGGTGAAGGAATATATTGAACT
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