FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_RHIME (Probable potassium transport system protein kup 1 OS=Rhizobium meliloti GN=kup1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.716e-27
Identity = 79/243 (32.51%), Postives = 128/243 (52.67%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPSM--PLKSP--TEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LVLA  ++GVV+G + TSPLY +     P+     T+ + +G+ S+M W LT+I  +KY    L+AD+QGEGGT +L +LL           K  + ++                        IL F+ + G  + IGD ++TPA+SVLSA++G++   P++S  +V  ++ ++L++LF +Q  GT+ VS  F PI   W      +G   I      IF+A +P+Y   F + +G  G ++L
Sbjct:    8 LVLALGSVGVVYGDIGTSPLYAFREALRPVSHDGVTDVEIIGLISLMIWALTIIVTIKYVLFLLRADNQGEGGTLSLLALLM----------KTANGHTA-----------------------ILFFMGIAGAALFIGDAMITPALSVLSAVEGLKLVTPALSDYVV-PIAVVILLLLFTVQSKGTAAVSNFFGPITLIWFVVMGTIGFVHIADDL-SIFRAFNPYYAASFLFNEGYVGIVVL 215          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ZYMMO (Probable potassium transport system protein kup OS=Zymomonas mobilis GN=kup PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.854e-27
Identity = 82/243 (33.74%), Postives = 124/243 (51.03%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPSM---PLKSPTEDDYL-GIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEG-WLL 963
            L L+   +G+VFG + TSPLY          + P +D ++ G+ S++FWT+ L+  VKY    +KAD++GEGG+ +L SL+ R                    GA  K              R L+ + +    +  GD ++TPA+SVLSA++G+    PS   S V  +S ++LI LF +Q  GT  V  LF PIM  +  +  ++G ++II   P I  AL+P+Y  HFF     +G W L
Sbjct:   34 LKLSLGAIGIVFGDIGTSPLYALKECFKGHHQLPVDDFHIYGLVSLIFWTMGLVVTVKYVMFIMKADNKGEGGSMSLLSLIIR--------------------GANPK------------LSRWLIVLGVFATALFYGDSMITPAMSVLSAVEGLTVIEPSFD-SWVPPVSVVILIGLFCIQARGTESVGRLFGPIMLVYFATLAILGAFNIITRSPAILLALNPYYAIHFFASDPLQGFWAL 243          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_GEOUR (Probable potassium transport system protein kup OS=Geobacter uraniireducens (strain Rf4) GN=kup PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.854e-27
Identity = 79/247 (31.98%), Postives = 129/247 (52.23%), Query Frame = 1
Query:  241 WENLVLAYKTLGVVFGGLVTSPLYVYPSM-PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILL--FIAMLGMCMLIGDGILTPAISVLSAMDG--IRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            WE +V   K++G+VFG + TSP+Y    +  L  PTE +  GI S++ WTL ++  V+YA +A+    +GEGGT  L  +L R +  G                                 R+I    F++ +G+ +L+GDG++TPAIS+LSA++G  +     S+    +  ++A++ +VLF+ Q  GT +V+  F P+M  W  +  + G+ SI   +P I  A+SPHY  +FF   G   + +L
Sbjct:    9 WEGVV---KSMGLVFGDIGTSPIYTLTVIFALTKPTEANVFGILSMVVWTLIILVTVEYAWLAMSLGRKGEGGTIVLKEILIRLLKPG---------------------------------RQIAFVGFLSFVGVSLLLGDGVITPAISILSAVEGLVLIPGLESMRLGTLILIAALIAVVLFIFQFKGTDKVAAAFGPLMVLWFGALTVSGLVSIA-TFPKILGAVSPHYAINFFRDNGISAFFVL 218          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_BRASO (Probable potassium transport system protein kup 1 OS=Bradyrhizobium sp. (strain ORS278) GN=kup1 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.854e-27
Identity = 76/241 (31.54%), Postives = 120/241 (49.79%), Query Frame = 1
Query:  253 VLAYKTLGVVFGGLVTSPLYVYPSM--PLKSPT-EDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            +LA   LG+VFG + TSPLY + ++      PT     LG  S++ WTL +I  VKY   A++ D+ GEGG  AL +LL  K                                     R  ++ + + G  ++ GDG +TPAISVLSA++G+    P++   +V A + ++L+ LF +Q  GT+ +  LF P+M  W  +  ++G+  I  H P +F A++P Y   +    G  G+L+L
Sbjct:   16 LLALSALGIVFGDIGTSPLYTFKTILGTGGQPTGAAAVLGALSLVIWTLFIITTVKYVMFAMRVDNDGEGGILALMALLGVKRQ----------------------------------RRPTIVALGLFGAALIYGDGAITPAISVLSALEGLNMAAPALQPYVVPA-AVVILLALFAIQSRGTASIGRLFGPVMLLWFVTIAVLGLVGIARH-PTVFAAINPSYGLSYLVSNGATGFLVL 220          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_ERYLH (Probable potassium transport system protein kup OS=Erythrobacter litoralis (strain HTCC2594) GN=kup PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 6.339e-27
Identity = 78/241 (32.37%), Postives = 132/241 (54.77%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPL-KSPTEDDY---LGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA   +G+VFG + TSPLY +    +  +P   DY   LG+ S++FW++TLI  ++Y +I ++AD++G+GG+ AL +L+SR       S +N +   +                        ++ + +    +  GD ++TPAISVLSA++G+    P + +  V  ++ ++L+ LF+LQK GT++V  LF+P+M  +      +G+ SI+ H P I  AL+P+Y   FF   G   +L L
Sbjct:    7 LAIGAIGIVFGDIGTSPLYAFRETFVGPNPLPIDYNHVLGVVSLIFWSMTLIVAIQYVTILMRADNKGQGGSLALVALISR-------SVRNTNYGWL------------------------VVLLGVFATSLFYGDSMITPAISVLSAVEGLVVVDPEL-QGFVIPIALVLLVGLFVLQKRGTAKVGALFAPVMIVYFTVIATLGLISIVQH-PEILYALNPYYAVLFFINDGFLAFLAL 214          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_RHOSR (Probable potassium transport system protein kup OS=Rhodococcus sp. (strain RHA1) GN=kup PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.279e-27
Identity = 77/229 (33.62%), Postives = 119/229 (51.97%), Query Frame = 1
Query:  271 LGVVFGGLVTSPLYVYPSM-------PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFW 936
            LGVVFG + TSP+Y   ++       P+   T + Y G+ S++FW++ LI    Y  + ++AD+ GEGG  AL +LL R                    GA   SR+            +L  + + G  +  GD ++TPAISVLSA++G++   P + + +V  ++A++++ LF +Q+ GT+ V  LF P+M  W  S    G+  I  H P I KALSP Y   FF+
Sbjct:   40 LGVVFGDIGTSPIYTIQTVFNPEDPHPVPISTNNVY-GVVSLIFWSVMLIVTATYVLLVMRADNDGEGGVMALITLLRRM-------------------GAVRGSRV----------TAVLAGLGIFGAALFFGDSMITPAISVLSAVEGLKVVEPGLEEWIV-PITAVIIVALFSVQRRGTAAVGRLFGPVMIVWFVSIGACGVSGIARH-PEILKALSPTYALSFFF 236          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_PROAC (Probable potassium transport system protein kup OS=Propionibacterium acnes GN=kup PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.279e-27
Identity = 77/230 (33.48%), Postives = 116/230 (50.43%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSM-----PLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   LG+VFG + TS LY   ++         PT  D +GI S++FW++ L+  VKY    ++AD+ GEGG  AL +L+ R M                H+G    +                L + ++G  +  GD  +TPAISV+SA++G+    P   K ++ A S ++L +LF++Q+ GT  +   F P+M  W  +   +GI  IIHH P I  ALSPH+   F
Sbjct:   30 LALAALGIVFGDIGTSVLYSLQTVFSMENHAVRPTHGDVMGIISMIFWSILLVVCVKYVIFVMRADNDGEGGILALMALVRRLM--------------ASHKGTGMTA----------------LLLGIVGAGLFYGDSFITPAISVMSAVEGLTVANPDAEKIVLPA-SVVILTLLFIVQRRGTEVIGKAFGPVMATWFLTLAALGIPWIIHH-PVIITALSPHWAILF 227          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_NITWN (Probable potassium transport system protein kup OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=kup PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.279e-27
Identity = 77/244 (31.56%), Postives = 124/244 (50.82%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSPTEDDY-----LGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAM--LGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L   ++GVVFG + TSPLY +      +  E        LG+ S++ W+L ++   KY  + L+AD+ GEGGT +L +L  R                                    L RR LL +A+  +G  M IGD ++TPAISVLSA++G++   P + +  V  L+ ++L++LF +Q  GT+RV+  F+P+M  W  +  ++G+   IH  P +  A++P Y  HF    G  G +++
Sbjct:   41 LTLGSVGVVFGDIGTSPLYAFREAVDHAAQEGAVTPAIVLGVLSLILWSLFIVVTAKYVLLLLRADNNGEGGTLSLMALGQRA-----------------------------------LGRRSLLLLALGVVGASMFIGDSMITPAISVLSAVEGLKLAAPRL-QDYVVPLTLVILVMLFAVQSRGTARVASAFAPVMALWFLTIAVLGVLH-IHEDPHVLLAVNPWYAIHFLLNHGLLGLVIM 247          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_AGRRK (Probable potassium transport system protein kup OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=kup PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.279e-27
Identity = 78/241 (32.37%), Postives = 124/241 (51.45%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSM--PLKSP--TEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA  ++GVV+G + TSPLY +     P+ +   T  + + + S+MFW LT+I  +KY    L+AD+ GEGGT +L +LL           K  + ++                        +L+ + +LG  + +GD ++TPA+SVLSA++G++   P++S  +V  +S  +L +LF +Q  GT  V+  F PI   W     L GI  I   Y GI  AL+P Y  +F   +G  G ++L
Sbjct:   21 LAVGSVGVVYGDIGTSPLYAFREALKPVAADGLTRGEVISLVSLMFWALTIIVTMKYVLFLLRADNDGEGGTLSLLALLM----------KTANGHTA-----------------------VLMLLGLLGAALFLGDAMITPALSVLSAVEGLKLVTPTLSDYIV-PISVAILALLFAIQSHGTGAVARFFGPITAIWFIVMGLAGIMHIADDY-GILAALNPWYAVNFLMNEGFLGVVVL 226          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_CORGL (Probable potassium transport system protein kup OS=Corynebacterium glutamicum GN=kup PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.081e-26
Identity = 82/243 (33.74%), Postives = 124/243 (51.03%), Query Frame = 1
Query:  253 VLAYKTLGVVFGGLVTSPLY-VYPSMPLK----SPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            +L    LGVVFG + TSPLY ++ +  ++      T+++  GI S++ WT+TLI  VKY  +  +AD+QG+GG  AL +LL                        +N+   GKF          +    MLG  +  GD ++TPAISVLSA +G+    PS  + ++  +S  VLI +F +Q  GT +V   F PIM  W  +   +GI  II H P I ++LSPH+       +  + ++LL
Sbjct:   17 LLTLGALGVVFGDIGTSPLYSLHTAFSMQHNKVEVTQENVYGIISMVLWTITLIVTVKYVMLVTRADNQGQGGILALVALL------------------------KNRGHWGKF----------VAVAGMLGAALFYGDVVITPAISVLSATEGLTVISPSFERFIL-PVSLAVLIAIFAIQPLGTEKVGKAFGPIMLLWFVTLAGLGIPQIIGH-PEILQSLSPHWALRLIVAEPFQAFVLL 223          
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
KUP1_RHIME3.716e-2732.51Probable potassium transport system protein kup 1 ... [more]
KUP_ZYMMO4.854e-2733.74Probable potassium transport system protein kup OS... [more]
KUP_GEOUR4.854e-2731.98Probable potassium transport system protein kup OS... [more]
KUP1_BRASO4.854e-2731.54Probable potassium transport system protein kup 1 ... [more]
KUP_ERYLH6.339e-2732.37Probable potassium transport system protein kup OS... [more]
KUP_RHOSR8.279e-2733.62Probable potassium transport system protein kup OS... [more]
KUP_PROAC8.279e-2733.48Probable potassium transport system protein kup OS... [more]
KUP_NITWN8.279e-2731.56Probable potassium transport system protein kup OS... [more]
KUP_AGRRK8.279e-2732.37Probable potassium transport system protein kup OS... [more]
KUP_CORGL1.081e-2633.74Probable potassium transport system protein kup OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
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