FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10716 contig Ccv1_Contig10716:54..1019. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: HAK19_ORYSJ (Potassium transporter 19 OS=Oryza sativa subsp. japonica GN=HAK19 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.562e-44
Identity = 102/253 (40.32%), Postives = 149/253 (58.89%), Query Frame = 1
Query:  235 GRW-ENLVLAYKTLGVVFGGLVTSPLYVYPS-MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSR-------LGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            G W   L LA++++GVV+G + TSPLYVY S  P      DD +G+ S++ +TL LI +VKY  I L A+D G+GGTFALYSL+SR   I        +  ++ +   E  S        + +  E S  A+  L  I +LG  M++GDG LTPAISVLSA+ GIR   P++++S V  +S  +L VLF +Q+FGT +V + F+P++  W      +G+Y++  H   I +A +P Y   +F R GKE W+ L
Sbjct:   39 GSWARTLQLAFQSIGVVYGDVGTSPLYVYSSTFPNGIKHPDDLVGVLSLILYTLILIPMVKYVFIVLYANDNGDGGTFALYSLISRHAKIRMIPNDQTEDANVSNYSIEAPSSQLRRAEWVKQKLESSNAAKIALFTITILGTSMVMGDGTLTPAISVLSAVSGIREKAPNLTQSQVVWISVAILFVLFSMQRFGTDKVGYTFAPVISVWFLLIAGIGMYNLTVHEITILRAFNPKYIVDYFRRNGKEAWVSL 291          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: HAK5_ORYSJ (Potassium transporter 5 OS=Oryza sativa subsp. japonica GN=HAK5 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.346e-44
Identity = 96/254 (37.80%), Postives = 150/254 (59.06%), Query Frame = 1
Query:  229 KKGRWENLVLAYKTLGVVFGGLVTSPLYVYPSMPLKSPTE-DDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSR-------LGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            K G    L LA++++GVV+G + TSPLYV+ S       + +D LG+ S++ +T+ L+ ++KY  I L+A+D G+GGTFALYSL+SR   I     +  +   + H   E+ S        + +  E S   + IL  + +L   M+IGDG+LTP ISVLSA+ GI+    S+++  +  ++  +LIVLFL+Q+FGT +V + F PI+  W       G+Y++  H  G+ KA +P Y   +F R GK+GW+ L
Sbjct:   55 KVGWATTLHLAFQSIGVVYGDMGTSPLYVFSSTFTNGIKDTNDILGVMSLIIYTVVLLPLIKYCFIVLRANDNGDGGTFALYSLISRYARISLIPNQQAEDAMVSHYKLESPSNRVKRAHWIKEKMENSPNFKIILFLVTILATSMVIGDGVLTPCISVLSAVGGIKESAKSLTQGQIAGIAIAILIVLFLVQRFGTDKVGYSFGPIILTWFIFIAGTGVYNLFKHDTGVLKAFNPKYIVDYFERNGKQGWISL 308          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: HAK1_ORYSJ (Potassium transporter 1 OS=Oryza sativa subsp. japonica GN=HAK1 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 3.346e-44
Identity = 96/247 (38.87%), Postives = 152/247 (61.54%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPS-MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFH---EGAENKSRLGKF----FEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L LA++++G+++G + TSPLYVY S  P      DD +G+ S++ +TL +I ++KY  I L A+D G+GGTFALYSL+SR   I     +  +   + +   E   ++ R  ++     E S  A+  L F+ +LG  M++GDG LTPAISVLSA+ GIR   P+++++ V  +S  +L +LF +Q+FGT +V + F+PI+  W      +G+Y+++ H   I KA +P Y   +F R GK+GW+ L
Sbjct:   56 LHLAFQSVGIIYGDIGTSPLYVYSSTFPDGIGHRDDLVGVLSLILYTLIIIPMLKYVFIVLYANDNGDGGTFALYSLISRYAKIRMIPNQQAEDAMVSNYSIEAPSSQLRRAQWVKHKLESSRAAKMALFFLTILGTSMVMGDGTLTPAISVLSAVSGIREKAPNLTQTQVVLISVAILFMLFSVQRFGTDKVGYTFAPIISVWFLLIAGIGLYNLVVHEITILKAFNPWYIVQYFRRNGKKGWVSL 302          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: HAK11_ORYSJ (Probable potassium transporter 11 OS=Oryza sativa subsp. japonica GN=HAK11 PE=2 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 1.271e-43
Identity = 106/254 (41.73%), Postives = 151/254 (59.45%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYV-YPSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKM-------------DIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPG-IFKALSPHYTFHFFWRKGKEGWLLL 966
            L LA+++LGVVFG L TSPLYV Y + P     E+D +G  S++ +TLTLI ++KY  + L+A+D G+GGTFALYSLL R               D+  +S +  + NS+   GA+ K    ++ E     R  LL + ++G C  IGDGILTPAISVLSA  GI+   P++S  +V  +S I+LI LF +Q +GT +V +LF+PI+  W      VG  + IH Y G + KA +P Y + +F R+  + W  L
Sbjct:   48 LRLAFQSLGVVFGDLGTSPLYVFYNAFPHGVDDEEDVIGALSLIIYTLTLIPLLKYVFVVLRANDNGQGGTFALYSLLCRHAKISTIPNQHKTDEDLTTYSRQTYEENSV---GAKIK----RWLEAHAYKRNCLLIVVLIGTCTAIGDGILTPAISVLSASGGIKVQNPNMSTDVVVIVSVIILIGLFSMQHYGTDKVGWLFAPIVLLWFILIGSVGALN-IHKYKGSVLKAYNPVYIYRYFQRRNSDSWASL 293          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: HAK20_ORYSJ (Potassium transporter 20 OS=Oryza sativa subsp. japonica GN=HAK20 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.660e-43
Identity = 102/247 (41.30%), Postives = 146/247 (59.11%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPS-MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSR-------LGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L LA++++GVV+G + TSPLYVY S  P      DD +G+ S+M +TL LI +VKY  I L A+D G+GGTFALYSL+SR   I        +  ++ +   E  S        + +  E S  A+  L  I +LG  M++GDG LTPAISVLSA+ GIR   PS+++  V  +S  +LIVLF +Q+FGT +V + F+P++  W      +G Y++  H   I +A +P Y   +F R GKE W+ L
Sbjct:   46 LQLAFQSIGVVYGDVGTSPLYVYSSTFPDGVKHPDDLVGVLSLMLYTLILIPMVKYVFIVLYANDNGDGGTFALYSLISRHAKIRMIPNDQTEDANVSNYSIEAPSSQLRRAEWVKQKLESSNAAKIALFTITILGTSMVMGDGTLTPAISVLSAVSGIREKAPSLTQLQVVWISVPILIVLFSVQRFGTDKVGYSFAPVISVWFVLIAGIGAYNLAVHEITILRAFNPMYIIDYFRRNGKEAWVSL 292          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: POT9_ARATH (Potassium transporter 9 OS=Arabidopsis thaliana GN=POT9 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.831e-43
Identity = 96/247 (38.87%), Postives = 150/247 (60.73%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYV-YPSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLD-------SNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L L++++LG+V+G L TSPLYV Y + P      +D +G  S++ ++L LI ++KY  I  KA+D G+GGT A+YSLL R   +     ++         S ++  EG+   ++  K+ E     +R LL + +LG CM+IGDGILTPAISVLSA  GI+   P +S  +V  ++ ++LI LF +Q +GT +V +LF+PI+  W       G+Y+I  +   + KA SP Y + +F R+G++GW+ L
Sbjct:   58 LRLSFQSLGIVYGDLGTSPLYVFYNTFPDGIDDSEDVIGALSLIIYSLLLIPLIKYVFIVCKANDNGQGGTLAIYSLLCRHAKVKLIPNQHRSDEDLTTYSRTVSAEGSF-AAKTKKWLEGKEWRKRALLVVVLLGTCMMIGDGILTPAISVLSATGGIKVNNPKMSGDIVVLVAIVILIGLFSMQHYGTDKVGWLFAPIVLIWFLFIGATGMYNICKYDTSVLKAFSPTYIYLYFKRRGRDGWISL 303          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: POT5_ARATH (Potassium transporter 5 OS=Arabidopsis thaliana GN=POT5 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.831e-43
Identity = 96/245 (39.18%), Postives = 150/245 (61.22%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPSMPLKSPTE-DDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAE-------NKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            LA+++LGVV+G + TSPLYVY S       + DD +G+ S++ +T+TL+ ++KY  I L+A+D GEGGTFALYSL+ R   +G    +  +   + +   E           + +  E S  A+ IL  + ++G  M+IGDGILTP+ISVLSA+ GI+    S+ ++ V  +S  +LIVLF  Q+FGT +V F F+PI+  W      +G++++  H   + KAL+P Y  ++F R G++GW+ L
Sbjct:   61 LAFQSLGVVYGDIGTSPLYVYASTFTDGINDKDDVVGVLSLIIYTITLVALLKYVFIVLQANDNGEGGTFALYSLICRYAKMGLIPNQEPEDVELSNYTLELPTTQLRRAHMIKEKLENSKFAKIILFLVTIMGTSMVIGDGILTPSISVLSAVSGIK----SLGQNTVVGVSVAILIVLFAFQRFGTDKVGFSFAPIILVWFTFLIGIGLFNLFKHDITVLKALNPLYIIYYFRRTGRQGWISL 301          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: POT3_ARATH (Potassium transporter 3 OS=Arabidopsis thaliana GN=POT3 PE=1 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 9.111e-42
Identity = 98/250 (39.20%), Postives = 147/250 (58.80%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPSMPLKS----PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFF---SAKNLDSNSIFHEGAENK----SRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L+LAY++ G+VFG L  SPLYVY            TED   G +S++FWT+TL+ ++KY    L ADD GEGG FALY+LL R           A + + ++ +  G  ++    S      E++  ++  LL + ++G  M+I  G+LTPAISV S++DG+ A   S+  S V  ++  +L+ LF+LQ  GT++V+FLF+PIM  W       G+Y+I+   P ++KALSP+Y + FF   G +GWL L
Sbjct:   12 LLLAYQSFGLVFGDLSISPLYVYKCTFYGGLRHHQTEDTIFGAFSLIFWTITLLSLIKYMVFVLSADDNGEGGIFALYALLCRHARFSLLPNQQAADEEISTYYGPGDASRNLPSSAFKSLIERNKRSKTALLVLVLVGTSMVITIGVLTPAISVSSSIDGLVAK-TSLKHSTVVMIACALLVGLFVLQHRGTNKVAFLFAPIMILWLLIIATAGVYNIVTWNPSVYKALSPYYIYVFFRDTGIDGWLSL 260          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: POT12_ARATH (Putative potassium transporter 12 OS=Arabidopsis thaliana GN=POT12 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 9.111e-42
Identity = 93/248 (37.50%), Postives = 148/248 (59.68%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPSMPLKSP--TEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFF-----SAKNLDSNSIFHEGAENKSRLG--KFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            L +A++TLGVV+G + TSPLYV+  +  K P  +E D LG  S++ +T+ +I + KY  + LKA+D GEGGTFALYSL+ R   +        + + + S  +     E +  LG  +  E     + +LL + ++G  M+IGDGILTPA+SV+SAM G++        + +   S ++L+ LF +Q+FGT +V FLF+P++  W FS   +GIY+++ +   + +AL+P Y   FF +  K+ W  L
Sbjct:   89 LGIAFQTLGVVYGDMGTSPLYVFSDVFSKVPIRSEVDVLGALSLVIYTIAVIPLAKYVFVVLKANDNGEGGTFALYSLICRYAKVNKLPNQQPADEQISSFRLKLPTPELERALGIKEALETKGYLKTLLLLLVLMGTSMIIGDGILTPAMSVMSAMSGLQGEVKGFGTNALVMSSIVILVALFSIQRFGTGKVGFLFAPVLALWFFSLGAIGIYNLLKYDFTVIRALNPFYIVLFFNKNSKQAWSAL 336          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: HAK23_ORYSJ (Potassium transporter 23 OS=Oryza sativa subsp. japonica GN=HAK23 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.554e-41
Identity = 93/248 (37.50%), Postives = 149/248 (60.08%), Query Frame = 1
Query:  250 LVLAYKTLGVVFGGLVTSPLYVYPSMPLKSP--TEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFF-SAKNLDSN-SIFH-----EGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            + +A++TLGVV+G + TSPLYV+  +  K P  +E + LG  S++ +T+ LI   KY  I LKA+D GEGGTFALYSL+ R   +    + + +D + S F         E    + +  EK+ + + ILLF+ ++G  M+IGDGILTP++SV+SA+ G++   P      V  +S + L++LF +Q+FGT +V F+F+PI+  W  +   +GIY++  +   + +A +P Y + FF   G + W  L
Sbjct:  133 VAMAFQTLGVVYGDMGTSPLYVFSDVFSKVPIKSEVEILGALSLVMYTIALIPFAKYVFIVLKANDNGEGGTFALYSLICRYAKVSLLPNQQRVDEDISSFRLKLPTPELERALSVKESLEKNPVFKNILLFLVLMGTSMVIGDGILTPSMSVMSAVSGLQGRVPGFGTDAVVIVSILFLVLLFSVQRFGTGKVGFMFAPILALWFINLGTIGIYNLAKYDISVVRAFNPVYIYLFFQTNGIKAWSAL 380          
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
HAK19_ORYSJ2.562e-4440.32Potassium transporter 19 OS=Oryza sativa subsp. ja... [more]
HAK5_ORYSJ3.346e-4437.80Potassium transporter 5 OS=Oryza sativa subsp. jap... [more]
HAK1_ORYSJ3.346e-4438.87Potassium transporter 1 OS=Oryza sativa subsp. jap... [more]
HAK11_ORYSJ1.271e-4341.73Probable potassium transporter 11 OS=Oryza sativa ... [more]
HAK20_ORYSJ1.660e-4341.30Potassium transporter 20 OS=Oryza sativa subsp. ja... [more]
POT9_ARATH4.831e-4338.87Potassium transporter 9 OS=Arabidopsis thaliana GN... [more]
POT5_ARATH4.831e-4339.18Potassium transporter 5 OS=Arabidopsis thaliana GN... [more]
POT3_ARATH9.111e-4239.20Potassium transporter 3 OS=Arabidopsis thaliana GN... [more]
POT12_ARATH9.111e-4237.50Putative potassium transporter 12 OS=Arabidopsis t... [more]
HAK23_ORYSJ1.554e-4137.50Potassium transporter 23 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
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