FC878172

Overview
NameFC878172
Unique NameFC878172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length966
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP1_CHRVO (Probable potassium transport system protein kup 1 OS=Chromobacterium violaceum GN=kup1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.277e-27
Identity = 76/250 (30.40%), Postives = 131/250 (52.40%), Query Frame = 1
Query:  229 KKGRWENLVLAYKTLGVVFGGLVTSPLYV----YPSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            ++G+    +L    LGVV+G L TSPLY     +       PT D+ +G+ S+  W+L L+  VKY  + ++AD++GEGG  AL + ++                     G   +  +G             + + + G  ML GDG++TPA+SVLSAM+G++   P+++  +V A + ++L +LF++Q FG+ RV   F PI+ AW  +   +G+  +  + P I +A++P +   +F R G  G++ L
Sbjct:   16 ERGQQSMAMLVLAALGVVYGDLGTSPLYALQEAFNGDHGVRPTPDNVVGVVSLFLWSLILMVSVKYVMVLMRADNKGEGGILALLAQITGG-----------------RSGDGRRVAVG------------WVLLGLAGAAMLYGDGVITPAVSVLSAMEGLQVATPALAAYVVPA-TVVILAMLFMIQPFGSGRVGAAFGPILAAWFVAIAALGLAQLWRN-PAILQAVNPWHGIAYFQRNGFAGFVSL 234          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_XANOR (Probable potassium transport system protein kup OS=Xanthomonas oryzae pv. oryzae GN=kup PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 79/231 (34.20%), Postives = 120/231 (51.95%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVY-----PSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            L    +GVVFG + TSPLY       P   L +P  D  LGI S++FW L L+  +KY ++ ++AD+ GEGG  AL +L  R +  G        S S++  G                       + + G  +  GDG++TPAISVLSA++G++   P + ++ V  ++ +VL +LFL Q+FGT RV   F PI   W F+   +G+Y++    P +  AL+P +   FF
Sbjct:   22 LVIGAIGVVFGDIGTSPLYTLKEAFSPHYGL-TPDHDTVLGILSLVFWALMLVVTLKYVTVIMRADNDGEGGIMALTALAQRTLPGG--------SRSMYVVG----------------------ILGIFGASLFFGDGVITPAISVLSAVEGLQVAAPKL-EAFVVPITLVVLGMLFLAQRFGTERVGKAFGPITLVWFFALGAIGVYNMA-RAPEVLHALNPWWGVLFF 219          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_XANOM (Probable potassium transport system protein kup OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=kup PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 79/231 (34.20%), Postives = 120/231 (51.95%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVY-----PSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFF 933
            L    +GVVFG + TSPLY       P   L +P  D  LGI S++FW L L+  +KY ++ ++AD+ GEGG  AL +L  R +  G        S S++  G                       + + G  +  GDG++TPAISVLSA++G++   P + ++ V  ++ +VL +LFL Q+FGT RV   F PI   W F+   +G+Y++    P +  AL+P +   FF
Sbjct:   22 LVIGAIGVVFGDIGTSPLYTLKEAFSPHYGL-TPDHDTVLGILSLVFWALMLVVTLKYVTVIMRADNDGEGGIMALTALAQRTLPGG--------SRSMYVVG----------------------ILGIFGASLFFGDGVITPAISVLSAVEGLQVAAPKL-EAFVVPITLVVLGMLFLAQRFGTERVGKAFGPITLVWFFALGAIGVYNMA-RAPEVLHALNPWWGVLFF 219          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_MYXXD (Probable potassium transport system protein kup OS=Myxococcus xanthus (strain DK 1622) GN=kup PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 73/242 (30.17%), Postives = 128/242 (52.89%), Query Frame = 1
Query:  253 VLAYKTLGVVFGGLVTSPLYV----YPSMPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            +LA   LG+V+G + TSPLY     +       PT  + LG+ S++FW+L ++  VKY  + +KAD++GEGG  A+ +L+ ++                               + S  +R +L+ + + G  +L GDGI+TPAI+VLSA++G+     +V    V  ++ ++L+ LFL+Q+ GT+ +  +F P+M  W  +   +G+  ++H+ P +  ALSP +    F      G+L+L
Sbjct:   38 LLALGALGIVYGDIGTSPLYALRECFTGAHGIPPTPANVLGVLSLIFWSLIIVVSVKYLLLVMKADNRGEGGILAMMALVMQRQRA----------------------------QPSHRSRPMLITLGIFGAALLYGDGIITPAITVLSAVEGLHVA-TAVFDPYVIPIALVILVALFLVQRHGTADIGAVFGPVMCIWFLTLAGLGVKELVHN-PAVLGALSPWHAVELFRHNHLHGFLVL 249          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_METAC (Probable potassium transport system protein kup OS=Methanosarcina acetivorans GN=kup PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 73/236 (30.93%), Postives = 123/236 (52.12%), Query Frame = 1
Query:  268 TLGVVFGGLVTSPLYVYPSMPLKS-PTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIR--APFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHFFWRKGKEGWLLL 966
            ++G+VFG + TSP+Y    + L + PTE   +G+ S++ WTL  +  V+YA +A+    +GEGGT  L  LL   +  G         N+ F                       +  +A +G+  L+GDG++TPAIS+LSA++G+R    F  + +  +  ++ I+ + LF +Q  GT  ++++F P+M  W  S    GI SI  + PG+ +A++P+Y   F    G  G+ +L
Sbjct:   13 SMGLVFGDIGTSPIYTLTVIFLLTRPTEVHVIGVLSLIIWTLITLVTVEYAWLAMSLGKKGEGGTIVLKELLVPLIKSG--------RNAAF-----------------------ITLLAYIGVSFLVGDGVITPAISILSAVEGLRIIPDFQDIGQGAIMFIAGIIAVALFSVQSKGTEEITWVFGPVMVLWFASLAFSGIASIF-YTPGVLRAINPYYAISFLLHNGFTGFFVL 216          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURTA (Probable potassium transport system protein kup OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=kup PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 78/232 (33.62%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +G+Y I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMVIWFVTIAALGVYHIA-RAPMIVSAINPYYAFSF 213          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURMS (Probable potassium transport system protein kup OS=Burkholderia mallei (strain SAVP1) GN=kup PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 79/232 (34.05%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMLLWFVTIAALGIYHIA-RAPMIVSAINPYYAFSF 213          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURMA (Probable potassium transport system protein kup OS=Burkholderia mallei GN=kup PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 79/232 (34.05%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMLLWFVTIAALGIYHIA-RAPMIVSAINPYYAFSF 213          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURM9 (Probable potassium transport system protein kup OS=Burkholderia mallei (strain NCTC 10229) GN=kup PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 79/232 (34.05%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMLLWFVTIAALGIYHIA-RAPMIVSAINPYYAFSF 213          
BLAST of FC878172 vs. ExPASy Swiss-Prot
Match: KUP_BURM7 (Probable potassium transport system protein kup OS=Burkholderia mallei (strain NCTC 10247) GN=kup PE=3 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.668e-27
Identity = 79/232 (34.05%), Postives = 119/232 (51.29%), Query Frame = 1
Query:  256 LAYKTLGVVFGGLVTSPLYVYPS-------MPLKSPTEDDYLGIYSIMFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLSRKMDIGFFSAKNLDSNSIFHEGAENKSRLGKFFEKSILARRILLFIAMLGMCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEALSAIVLIVLFLLQKFGTSRVSFLFSPIMGAWTFSTPLVGIYSIIHHYPGIFKALSPHYTFHF 930
            LA   +GVVFG + TSPLY           +PL   T    LG+ S++FW + L+  +KY    ++AD+ GEGG  AL +L  R ++                     KSR+            +++ + + G CM  GD ++TPAISV+SA++G+    P +S  LV  ++ ++LI LF +Q+ GT+ V  LF PIM  W  +   +GIY I    P I  A++P+Y F F
Sbjct:   17 LAIAAIGVVFGDIGTSPLYSLKEAFSPAHGIPL---TPSAILGVISLLFWAIILVVGIKYVLFVMRADNNGEGGVLALMALSLRPLN--------------------PKSRI----------TGLMMALGIFGACMFYGDAVITPAISVMSAVEGLEVATPQLS-HLVLPITIVILIALFWIQRHGTATVGKLFGPIMLLWFVTIAALGIYHIA-RAPMIVSAINPYYAFSF 213          
The following BLAST results are available for this feature:
BLAST of FC878172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 336
Match NameE-valueIdentityDescription
KUP1_CHRVO1.277e-2730.40Probable potassium transport system protein kup 1 ... [more]
KUP_XANOR1.668e-2734.20Probable potassium transport system protein kup OS... [more]
KUP_XANOM1.668e-2734.20Probable potassium transport system protein kup OS... [more]
KUP_MYXXD1.668e-2730.17Probable potassium transport system protein kup OS... [more]
KUP_METAC1.668e-2730.93Probable potassium transport system protein kup OS... [more]
KUP_BURTA1.668e-2733.62Probable potassium transport system protein kup OS... [more]
KUP_BURMS1.668e-2734.05Probable potassium transport system protein kup OS... [more]
KUP_BURMA1.668e-2734.05Probable potassium transport system protein kup OS... [more]
KUP_BURM91.668e-2734.05Probable potassium transport system protein kup OS... [more]
KUP_BURM71.668e-2734.05Probable potassium transport system protein kup OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA38CG07RM2 IVIA1 Citrus clementina cDNA clone IC0AAA38CG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878172 ID=FC878172; Name=FC878172; organism=Citrus clementina; type=EST; length=966bp
AATTACAGAATTGAAATTCTACAAATTATTATTATCTTTTCGGTGCTTTT
TCTTTTTTCTTTTTTTCTCCAAATTATGGACCGGCAACTCGGTGCCGCTG
ACTCGGTTGCCGCGTCCACCTTCTCCGAGGTCGTCGTCGACGTTCAGCCT
TCTTTTAATGCTGACGTCCATTCTCGTCTTCGTCACTCTCGCAACTCCAT
CAACTCCTCTGCTTCTGCTGCAGACAACAAGAAGGGTCGATGGGAGAATT
TGGTACTCGCATACAAGACACTGGGAGTTGTATTTGGAGGACTCGTAACA
TCTCCATTATATGTGTACCCGTCAATGCCGTTGAAGTCTCCAACTGAAGA
TGACTACTTGGGCATTTACAGCATCATGTTTTGGACTCTTACTCTAATTG
GTGTTGTCAAATATGCCAGCATAGCTCTCAAAGCTGATGATCAAGGCGAA
GGAGGAACATTTGCCTTGTATTCCTTACTTAGTCGGAAAATGGATATTGG
GTTCTTTTCTGCTAAAAACCTGGATTCAAACTCTATTTTTCATGAGGGCG
CAGAAAATAAAAGTAGGCTAGGCAAGTTTTTTGAGAAAAGTATTCTTGCC
AGAAGAATATTGCTCTTCATTGCAATGTTAGGAATGTGCATGTTGATTGG
AGATGGAATACTTACACCTGCAATCTCAGTATTATCAGCTATGGATGGCA
TCAGAGCACCTTTTCCTTCTGTCAGTAAATCTTTGGTGGAAGCTCTTTCT
GCTATAGTTCTAATTGTTCTCTTCCTACTGCAAAAGTTTGGCACCTCCCG
AGTGAGTTTTCTTTTCTCCCCCATCATGGGTGCATGGACATTCAGTACTC
CTCTTGTTGGAATTTATAGCATTATACATCACTATCCTGGTATATTCAAA
GCTTTATCCCCACACTACACATTCCATTTCTTTTGGAGGAAAGGAAAAGA
AGGCTGGCTGTTGCTT
back to top