FC878173

Overview
NameFC878173
Unique NameFC878173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length936
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10351 contig Ccv1_Contig10351:98..1033. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: CARP_RHIPU (Mucorpepsin OS=Rhizomucor pusillus PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.890e-13
Identity = 52/172 (30.23%), Postives = 74/172 (43.02%), Query Frame = 3
Query:  273 GDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAK-----FDGILGLGFQEISIGKA------IPVWYNMLDQGLVKEPVFSFWLN 755
            GD   D   L +F   +Y   VSIGTP Q F ++FDTGSS+ WVP   C  S                      +  I YGTG  +G + +D++ VG   VK Q        +  T   +       DG+ G  + + +  +A        V  N+  QGL+  PVFS ++N
Sbjct:   69 GDGSVDTPGLYDFDLEEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGMFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMN 240          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: CARP_RHIMI (Mucorpepsin OS=Rhizomucor miehei PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.434e-12
Identity = 52/204 (25.49%), Postives = 82/204 (40.20%), Query Frame = 3
Query:  177 LDQINRLVGQTVSKEEETMRTPVRRYNLHGSLGDSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQ-----DFIEATKEASITFLAAKFDGILGLGFQEISIGKA------IPVWYNMLDQGLVKEPVFSFWLN 755
            L  ++R   QT   +++             +  D   D     +F   +Y   VSIGTP Q F ++FDTGSS+ WVP   C  S                      +  I YGTG  +G + +D++ +GD+ V  Q     D +               DG+ G  + + +  +A        V  N+  QGL+  P+FS ++N
Sbjct:   40 LTSVSRKFSQTKFGQQQLAEKLAGLKPFSEAAADGSVDTPGYYDFDLEEYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCTKSEGCVGSRFFDPSASSTFKATNYNLNITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYPDNTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMN 243          
BLAST of FC878173 vs. ExPASy Swiss-Prot
Match: CARP_CRYPA (Endothiapepsin OS=Cryphonectria parasitica GN=EAPA PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.586e-11
Identity = 58/190 (30.53%), Postives = 85/190 (44.74%), Query Frame = 3
Query:  312 MDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLA-AKFDGILGLGFQEI-SIGKAIPVWYNMLDQGLVKEPVFSFWLNRDXXXXXXXXXXXXXXDPDHYKGEHTYVPV-TKKGYWQF 869
            +D  Y   V IGTP+QT  + FDTGSS+LWV S++   S                   +G + +I YG G + SG    D V VG L V  Q  +E+ K+ S +F   +  DG+LGL F  + ++       +    +  +  PVF+     D              D   Y G  TY  V TK+G+W++
Sbjct:  102 LDDAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVDGQTIYTPSKSTTAKLLSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQ-AVESAKKVSSSFTEDSTIDGLLGLAFSTLNTVSPTQQKTFFDNAKASLDSPVFT----ADLGYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEW 286          
The following BLAST results are available for this feature:
BLAST of FC878173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
CARP_RHIPU2.890e-1330.23Mucorpepsin OS=Rhizomucor pusillus PE=1 SV=2[more]
CARP_RHIMI1.434e-1225.49Mucorpepsin OS=Rhizomucor miehei PE=1 SV=1[more]
CARP_CRYPA1.586e-1130.53Endothiapepsin OS=Cryphonectria parasitica GN=EAPA... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878173 ID=FC878173; Name=FC878173; organism=Citrus clementina; type=EST; length=936bp
CTCGTCAGTCCACTTCTTTACTCTGTCTGTGCTCTTTTGAAAGATACTCA
GTTGTCGACATGGGAACCAAATTCACAGCCATTCGGGTTGCACTTTTTCT
TTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTTGCCAAATGATGGATTGG
TAAGAATTGGGCTGAGAAAGAAGAAATTGGATCAGATCAATCGCCTTGTT
GGACAGACTGTATCTAAGGAAGAGGAAACGATGAGAACACCTGTCAGAAG
ATATAATCTCCATGGTAGTCTTGGAGATTCTGATACTGATATTGTTGCAT
TAAATAACTTTATGGATGCTCAGTATTTTGGGGAGGTTAGTATTGGCACA
CCTTCCCAGACCTTCACTGTGATATTTGACACAGGAAGTTCTAATCTTTG
GGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTCTTGCTATTTCCACTCCA
AGTATAAGTCCAGCCATTCAAGTACCTACAAAAGGAATGGGACATCTGCC
GCAATCCAATATGGGACTGGAGCAATTTCTGGTTTCTTTAGCCAGGACAA
TGTGAAAGTTGGTGATCTTGTTGTTAAGAATCAGGATTTCATTGAGGCAA
CCAAAGAAGCTAGCATCACATTCTTGGCAGCCAAGTTTGATGGTATACTT
GGGCTTGGATTTCAAGAGATCTCAATTGGAAAAGCCATTCCAGTCTGGTA
TAATATGCTTGATCAAGGTCTCGTTAAAGAACCAGTTTTTTCATTTTGGT
TAAACCGTGATATTGAAGGTGAAGAAGGTGGGGAAATTGTGTTTGGTGGG
GTTGATCCTGATCATTACAAGGGTGAACACACATATGTGCCAGTGACTAA
GAAAGGCTATTGGCAGTTTGAAATGGGTGATGTCCTGATTGATGGTGAAA
CAACTGGATATTGTTCCACTGGGTGTAACGCAATTG
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