FC878179
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 8.252e-16 Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = 1 Query: 610 LTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 939 +T F+ N M CDPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P K + PP ++ A + N+TAI E + R+ +F M+ ++AF+HWY Sbjct: 1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 118
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13 Identity = 70/338 (20.71%), Postives = 131/338 (38.76%), Query Frame = 1 Query: 25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNAD---------LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT----VPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKE----------------VDEQMLNIQN-KNSSYFVEWIP--NNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942 + G+GNNWA G+ G +S++D++RKE E CD GF ++++Y + + + P + +V+ YN+ L++ L ++D +N+A++ IC + + + ++ D+N +++ + V F +A+ L L ++VP P P S S Y T + L Q + M D H R G+MS+ + D Q +++ K+ + + W+ N + +A + NS + + I + MF KA++H YT Sbjct: 97 KQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSV-----FQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSIRNVPHMSENSLAYSTFTWAGLLKHLRQMLISNAKMEEGID-WHARPPLSGLPSLGKMSLNKDLHFNTSIANLVILRGKDVQSADVEGFKDPALYTSWLEPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVRKAWNMFASKAYIHQYT 427
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2) HSP 1 Score: 72.7886 bits (177), Expect = 3.245e-12 Identity = 67/338 (19.82%), Postives = 129/338 (38.17%), Query Frame = 1 Query: 25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNAD---------LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT----VPELTQQMFDAKNMMAACDPRH----------------GRYLTVAAIFRGRMSMKEVDEQMLNIQN-KNSSYFVEWIP--NNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942 + G+GNNWA G+ G +S+++++RKE E CD GF + ++Y + + + P + +V+ YN+ L++ L ++D +N+A++ IC + + + ++ D+N +++ + V F +A+ L L ++VP P P S S Y T + L Q + M D RH + L + ++ D Q +++ K+ + + W+ N + +A + NS + + I + MF KA++H YT Sbjct: 97 KQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV-----FQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFTWAGLLKHLRQMLISNAKMEEGID-RHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRGKDVQSADVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASKAYIHQYT 427
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 5.535e-12 Identity = 35/143 (24.48%), Postives = 70/143 (48.95%), Query Frame = 1 Query: 25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGV 453 + G GNNWA G+ G + D V+D+VRK+ E CD L GF +R+ YPD ++ + P + +V+ YN+ L++ L ++D +N+ ++ +C + + + ++ D+N +++ + + Sbjct: 97 KQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 9.442e-12 Identity = 44/196 (22.45%), Postives = 85/196 (43.37%), Query Frame = 1 Query: 25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGV-TTCLRFPGQLN---ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 600 + G+GNNWA G+ G +S++++++KE E CD L GF ++++Y + + + P + +V+ YN+ L++ L ++D +N+A++ IC + + + ++ D+N +++ + V G + L L N+VP P P S S Y T Sbjct: 97 KEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYRRNPLGDLMENLVPHPEFKMLGIRNIPQMSENSLTYSTFT 291
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11 Identity = 71/338 (21.01%), Postives = 134/338 (39.64%), Query Frame = 1 Query: 25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGV-----TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT----VPELTQQMFDAKNM-------------------MAACDPRHGRYLTVA--AIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942 + G+GNNWA G+ G + +S++++++ E E CD L GF K++++Y + + P + +V+ YN+ L++ L ++D +N+A++ IC + + + ++ DLN +++ + V + F + N L L ++VP P P S S Y A T + L Q + + M A+ H ++A + RGR + D + K+ + + W+ +V + +A + NS + + I + MF KAF+H YT Sbjct: 97 KQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSVFQPTYSEDSSFHYRRN-PLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFTWAGLLKHLRQMLISSAKMEEGINWQVRPPLTGLPPIGKASAHKEHHFNTSLANLVVLRGR-EVHSADVEGF----KDPALYTSWLEPVDAFSVWKTQRAFDKYEKSAALVSNSQLLVKPLDMIVGKAWNMFSSKAFIHQYT 427 The following BLAST results are available for this feature:
BLAST of FC878179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 426
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878179 ID=FC878179; Name=FC878179; organism=Citrus clementina; type=EST; length=944bpback to top |