FC878179

Overview
NameFC878179
Unique NameFC878179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length944
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBA_LYTPI (Tubulin alpha chain (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.252e-16
Identity = 38/118 (32.20%), Postives = 63/118 (53.39%), Query Frame = 1
Query:  610 LTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPP--------RGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWY 939
            +T   F+  N M  CDPRHG+Y+    ++RG +  K+V+  +  I+ K +  FV+W P   K  +   PP          ++ A   + N+TAI E + R+  +F  M+ ++AF+HWY
Sbjct:    1 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWY 118          
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.721e-13
Identity = 70/338 (20.71%), Postives = 131/338 (38.76%), Query Frame = 1
Query:   25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNAD---------LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT----VPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKE----------------VDEQMLNIQN-KNSSYFVEWIP--NNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            + G+GNNWA G+   G    +S++D++RKE E CD   GF                     ++++Y + +     + P     + +V+ YN+ L++  L  ++D     +N+A++ IC + + +   ++ D+N +++  +  V     F    +A+         L  L  ++VP P          P  S  S  Y   T    +  L Q +     M    D  H R         G+MS+ +                 D Q  +++  K+ + +  W+   N              + +A  + NS  + +    I  +   MF  KA++H YT
Sbjct:   97 KQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSV-----FQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSIRNVPHMSENSLAYSTFTWAGLLKHLRQMLISNAKMEEGID-WHARPPLSGLPSLGKMSLNKDLHFNTSIANLVILRGKDVQSADVEGFKDPALYTSWLEPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVRKAWNMFASKAYIHQYT 427          
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_HUMAN (Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.245e-12
Identity = 67/338 (19.82%), Postives = 129/338 (38.17%), Query Frame = 1
Query:   25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQLNAD---------LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT----VPELTQQMFDAKNMMAACDPRH----------------GRYLTVAAIFRGRMSMKEVDEQMLNIQN-KNSSYFVEWIP--NNVKTAVCDIPPRGLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            + G+GNNWA G+   G    +S+++++RKE E CD   GF                     + ++Y + +     + P     + +V+ YN+ L++  L  ++D     +N+A++ IC + + +   ++ D+N +++  +  V     F    +A+         L  L  ++VP P          P  S  S  Y   T    +  L Q +     M    D RH                 + L         + ++  D Q  +++  K+ + +  W+   N              + +A  + NS  + +    I  +   MF  KA++H YT
Sbjct:   97 KQGSGNNWAYGYSVHGPRHEESIMNIIRKEVEKCDSFSGFFIIMSMAGGTGSGLGAFVTQNLEDQYSNSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLLHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSV-----FQPTYSAESSFHYRRNPLGDLMEHLVPHPEFKMLSVRNIPHMSENSLAYTTFTWAGLLKHLRQMLISNAKMEEGID-RHVWPPLSGLPPLSKMSLNKDLHFNTSIANLVILRGKDVQSADVEGFKDPALYTSWLKPVNAFNVWKTQRAFSKYEKSAVLVSNSQFLVKPLDMIVGKAWNMFASKAYIHQYT 427          
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_XENTR (Tubulin delta chain OS=Xenopus tropicalis GN=tubd1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.535e-12
Identity = 35/143 (24.48%), Postives = 70/143 (48.95%), Query Frame = 1
Query:   25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGV 453
            + G GNNWA G+   G +  D V+D+VRK+ E CD L GF                     +R+ YPD ++    + P     + +V+ YN+ L++  L  ++D     +N+ ++ +C + + +   ++ D+N +++  +  +
Sbjct:   97 KQGCGNNWANGYCVHGPKHQDIVMDLVRKQVEKCDRLGGFFTIMSMAGGTGSGMGTFLTRCLRDAYPDSLLLNQVIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLVHENDIIHKVCSQLMNIKQISFRDVNKVIAHQLGSI 238          
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.442e-12
Identity = 44/196 (22.45%), Postives = 85/196 (43.37%), Query Frame = 1
Query:   25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGV-TTCLRFPGQLN---ADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 600
            + G+GNNWA G+   G    +S++++++KE E CD L GF                     ++++Y + +     + P     + +V+ YN+ L++  L  ++D     +N+A++ IC + + +   ++ D+N +++  +  V        G  +     L  L  N+VP P          P  S  S  Y   T
Sbjct:   97 KEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAKLMNIKQISFSDINQVLAHQLGSVFQPTYSVEGSCHYRRNPLGDLMENLVPHPEFKMLGIRNIPQMSENSLTYSTFT 291          
BLAST of FC878179 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 71/338 (21.01%), Postives = 134/338 (39.64%), Query Frame = 1
Query:   25 QSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGV-----TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT----VPELTQQMFDAKNM-------------------MAACDPRHGRYLTVA--AIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIPPR--GLKMAATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYT 942
            + G+GNNWA G+   G +  +S++++++ E E CD L GF                    K++++Y   +     + P     + +V+ YN+ L++  L  ++D     +N+A++ IC + + +   ++ DLN +++  +  V     +    F  + N  L  L  ++VP P          P  S  S  Y A T    +  L Q +  +  M                    A+    H    ++A   + RGR  +   D +      K+ + +  W+      +V          + +A  + NS  + +    I  +   MF  KAF+H YT
Sbjct:   97 KQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPY-GTGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSVFQPTYSEDSSFHYRRN-PLGDLMEHLVPHPEFKMLGVRNIPQMSAASLAYSAFTWAGLLKHLRQMLISSAKMEEGINWQVRPPLTGLPPIGKASAHKEHHFNTSLANLVVLRGR-EVHSADVEGF----KDPALYTSWLEPVDAFSVWKTQRAFDKYEKSAALVSNSQLLVKPLDMIVGKAWNMFSSKAFIHQYT 427          
The following BLAST results are available for this feature:
BLAST of FC878179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 426
Match NameE-valueIdentityDescription
TBA_LYTPI8.252e-1632.20Tubulin alpha chain (Fragment) OS=Lytechinus pictu... [more]
TBD_MACFA1.721e-1320.71Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_HUMAN3.245e-1219.82Tubulin delta chain OS=Homo sapiens GN=TUBD1 PE=1 ... [more]
TBD_XENTR5.535e-1224.48Tubulin delta chain OS=Xenopus tropicalis GN=tubd1... [more]
TBD_CANFA9.442e-1222.45Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]
TBD_MOUSE1.611e-1121.01Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA83DG10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA83DG10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878179 ID=FC878179; Name=FC878179; organism=Citrus clementina; type=EST; length=944bp
CGCCCCGACAACTTCGTGTTCGGACAGTCTGGCGCCGGCAACAACTGGGC
CAAGGGACACTACACAGAGGGCGCCGAGCTCGTCGACTCGGTTCTTGACG
TAGTCCGCAAAGAAGCAGAATCTTGCGATTGCCTCCAAGGTTTCCAACTG
ACACACTCGCTCGGTGGCGGTACCGGATCCGGTATGGGCACCCTACTCAT
CTCCAAAATCAGAGAAGAATACCCCGACAGAATAATGAACACATACTCAG
TAGTCCCCTCACCCAAAGTATCAGATACAGTAGTAGAACCTTACAACGCC
ACTCTCTCAGTCCATCAGCTAGTCGAAAACACAGATGAAACCTATTGTAT
TGACAACGAAGCTCTCTATGACATCTGCTTCCGCACACTCAAGCTATCGA
CACCCACATACGGAGACCTCAACCACCTGGTTTCCCTCACCATGTCCGGC
GTGACGACGTGTCTGCGGTTCCCTGGTCAGCTCAACGCCGATCTCCGCAA
ACTGGCCGTCAACATGGTTCCCTTCCCGCGTCTCCACTTCTTCATGCCTG
GATTCGCGCCCCTCACGTCCCGCGGCAGCCAGCAGTACCGCGCTTTGACC
GTGCCCGAGCTCACCCAACAGATGTTCGACGCCAAGAACATGATGGCCGC
CTGCGACCCGCGCCACGGCCGCTACCTCACCGTGGCCGCCATCTTCCGCG
GACGCATGTCCATGAAGGAGGTCGACGAGCAGATGCTCAACATCCAGAAC
AAGAACTCGTCCTACTTCGTGGAATGGATCCCGAACAACGTGAAGACCGC
CGTGTGCGACATCCCCCCGCGCGGGCTCAAGATGGCCGCCACCTTCATCG
GCAACTCCACCGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTC
ACGGCTATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACTGG
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