FC878207

Overview
NameFC878207
Unique NameFC878207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878207_ssr125 microsatellite FC878207_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:80..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Ribosomal RNA large subunit methyltransferase N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.224e-63
Identity = 123/238 (51.68%), Postives = 166/238 (69.75%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP---MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R ++ E    +GR  +     A DGTVK L++L D ++IETVGIP   E+G     RLT CVS+QVGCP+ C FCATGKGG+ RNL+ HEI+ QVL ++E F+ RV+NVVFMG+GEP+LN ++VL A + LN+D+ IGQR +T+STVG+ + I++ A   LQ TLA+SLHAPNQ LRE ++PSA++YPLE
Sbjct:   24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAEI--PIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENVLAALKSLNQDIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVSLHAPNQALREKLIPSARAYPLE 259          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNSC (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9605) GN=rlmN PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.599e-63
Identity = 127/241 (52.70%), Postives = 161/241 (66.80%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQS------TLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S  ELQ  AV  GQ+ +RG+QLH  IY +  + + +    P+++R  L EAG  VGRL       A D T KLL+  ED   IETVGIP +      RLT CVSSQVGCP+ C FCATGKGG  R+L +HEIV QVL++ E    R +++VFMGMGEP+LN  +VLEA RCLN D+ IGQR IT+STVGVP T+ +LA   +Q       TLA+SLHAPNQ+LRE ++P+A +YP +
Sbjct:    5 LLGRSAAELQDWAVAQGQKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVEAGVDVGRLKEVHHSVATDATTKLLLSTEDGETIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLQTHEIVDQVLSVREAMDRRPSHIVFMGMGEPLLNSSAVLEAIRCLNDDLGIGQRRITVSTVGVPKTLPQLAELAMQRLGRAQFTLAVSLHAPNQRLREELIPTAHAYPYD 240          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMT (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL2A) GN=rlmN PE=3 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.599e-63
Identity = 121/251 (48.21%), Postives = 174/251 (69.32%), Query Frame = 3
Query:  135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            ++ P++ +N  LLG+S ++L++ A   G++S+RG+Q+H  IY+R  K +++   LP+ +R+ L   G  +GRL     V A D T+KLL+   D  ++ETVGIP +      RLT CVSSQ+GCP+ C FCATGKGG +R+L  +EIV QV+++ E    R T+VVFMGMGEP+LN+++VL++  CL  D+ IGQR IT+STVG+PNT+  LA        +++ TLA+SLHAPNQ LRE I+PSA SYP+
Sbjct:    2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQVISVRETMNRRPTHVVFMGMGEPLLNIRNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQTLRELIIPSASSYPI 247          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 2.088e-63
Identity = 125/235 (53.19%), Postives = 166/235 (70.64%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S   L+  AV+ GQ +YRG+QLH  +Y + ++ ++     P+++R  LQE  + VGR  + + + + DGTVK L++L D  LIETVGIP        RLT CVSSQVGCP+ C+FCATGK G+ RNL  HEI+ QVL ++E F  RV++VVFMGMGEP+LN  +V++A R LN+D+ IGQR IT+STVGVP  I  LA   LQ TLA+SLHAPNQ+LR+ ++PSA  YPL+
Sbjct:    8 LLGQSLAALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQLADGELIETVGIPTA-----RRLTVCVSSQVGCPMACNFCATGKMGYRRNLKLHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLD 235          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_GLOVI (Ribosomal RNA large subunit methyltransferase N OS=Gloeobacter violaceus GN=rlmN PE=3 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.652e-63
Identity = 123/235 (52.34%), Postives = 162/235 (68.94%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S +EL+      GQ +YR +QLH  +Y+R V+ +      P+++R  +      VGR  + R   AADGT+K L+   D   +ETVGIP  +     RLT CVSSQVGCP+ C FCATG+ GF+RNL  HEIV QVL ++E F  RV++VVFMGMGEP+LNL +V++A R LN D+ IGQR IT+STVGVP  I++L +YKLQ TLA+SLHAPNQ LR  ++P+A+ YP+E
Sbjct:    5 LLGQSAEELRIWVESQGQPAYRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHSV--PVGRSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-----RLTVCVSSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLLNLGAVVQALRVLNGDIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLKLIPTAQHYPIE 232          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ANASP (Ribosomal RNA large subunit methyltransferase N OS=Anabaena sp. (strain PCC 7120) GN=rlmN PE=3 SV=2)

HSP 1 Score: 241.506 bits (615), Expect = 4.652e-63
Identity = 128/259 (49.42%), Postives = 172/259 (66.41%), Query Frame = 3
Query:   93 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +S TP  +L+ SS  + P    + LLG S  EL       GQ +YRGKQLH  IY + V+ + +     + +R  + +    +GR  I     A+DGTVK L++L D  ++E VGIP +      RLT CVS+QVGCP+ C FCATGKGG+ RNL  HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL   R LN+DV IGQR +T+STVG+ + I +LA + LQ TLA+SLHAPNQ LRE ++PSA+SY +E
Sbjct:    1 MSATPVTQLTPSSQPQQP---CSPLLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQDVGIGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIE 249          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMA (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus GN=rlmN PE=3 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 1.354e-62
Identity = 123/241 (51.04%), Postives = 168/241 (69.71%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG+   +L++LA+D G+  YRG+QLH  +Y++ V  +++   LP+++RN L + G +VG L       A D T+KLL+   D  +IETVGIP  +     RLT CVSSQ+GCP+ C FCATGK G  R+L  +EIV QV A+++ F    +NVVFMGMGEP+LN++ VL +  CLNKD+ IGQR IT+STVGV NT+ +LA   L      Q TLA+SLHAPNQKLRES++PSA++YP++
Sbjct:    8 LLGLDLSQLERLALDHGESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLIQKGISVGGLVEVNRFIAGDRTIKLLLSTGDGEIIETVGIPSGN-----RLTICVSSQIGCPMGCQFCATGKDGLKRSLKVNEIVAQVFAVKKAFNRSPSNVVFMGMGEPLLNIEEVLSSICCLNKDLGIGQRRITVSTVGVKNTLPQLAELALQFLGSVQFTLALSLHAPNQKLRESLIPSAQNYPIK 243          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CYAA5 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.768e-62
Identity = 125/234 (53.42%), Postives = 163/234 (69.66%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            LLG S  +L       GQ +YRGKQLH  +Y++ V+ +      P+++R +L++  + +GR  I     A D T K L+ L D  +IETVGIP        RLT CVSSQVGCP+ C FCATGKGG++RNL+  EIV QVL ++E F+ RV++VVFMGMGEP+LNLK V++A + LN+DV IGQR +TISTVGVP  I +LA ++LQ T A+SLHA NQ LRE ++PSAKSYPL
Sbjct:    8 LLGKSVGQLTDWVKQQGQPAYRGKQLHQWLYQKGVRSLTEISVFPKAWREELKD--YPIGRSNIVHCTIAPDQTRKYLLSLGDGLIIETVGIPTSK-----RLTVCVSSQVGCPMNCDFCATGKGGYTRNLTCAEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGVPKKILELAHHQLQVTFAVSLHAANQTLREQLIPSAKSYPL 234          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. GN=rlmN PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.309e-62
Identity = 127/235 (54.04%), Postives = 162/235 (68.94%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG S   L+  AV  GQ +YRG+QLH  IY++ ++ +E     P+++R  +Q   + VGR  I +   A DGTVK L+ L D +LIETVGIP        RLT CVSSQVGCP+ C FCATGK G+ RNL  HEI+ QVL ++E F  RV++VVFMGMGEP+LN  +V++A R LN+D+ IGQR IT+STVGVP  I  LA   LQ TLA+SLHAPNQ LR+ ++PSA  YPL+
Sbjct:    8 LLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAVQS--YPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLD 235          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNE7 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus elongatus (strain PCC 7942) GN=rlmN PE=3 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.144e-62
Identity = 124/244 (50.82%), Postives = 164/244 (67.21%), Query Frame = 3
Query:  153 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            DA  LLG S  ELQ   V  GQ SYR KQL+  +Y+R +  +      P+++R  LQ     VGR  I     +  GT+K L++L D  +IE VGIP  D     RLT CVSSQ+GC + C FCATGKGGF R+L+ HEI+ QVL ++E ++ RV+N+VFMGMGEP+LNL +VL A RCLN+D+ IGQR IT+STVG+P  I++LA  K      LQ TLA+SLHAPNQ +R+ ++PS++ YP+
Sbjct:   13 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGTIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQLGCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLLNLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPNQAIRDRLIPSSRHYPI 249          
The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_NOSP71.224e-6351.68Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNSC1.599e-6352.70Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMT1.599e-6348.21Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNJA2.088e-6353.19Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GLOVI4.652e-6352.34Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ANASP4.652e-6349.42Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROMA1.354e-6251.04Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CYAA51.768e-6253.42Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNJB2.309e-6254.04Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SYNE75.144e-6250.82Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTAGGT
TGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAAG
AAATCTTTCAAGCCATGAAATTGTTGGGCAGGTGTTAGCAATTGAAGAGA
TCTTCAAGCATAGGGTGACAAACGTAGTGTTCATGGGAATGGGCGAGCCA
ATGTTGAACCTAAAGTCTGTGCTTGAAGCACATCGATGTTTGAATAAGGA
TGTGCAAATTGGACAAAGGATGATTACAATTTCCACTGTGGGGGTTCCGA
ACACAATTAAAAAGTTGGCCTCTTACAAACTTCAGTCAACATTGGCTATC
AGCTTACATGCTCCAAACCAGAAACTGAGGGAATCAATTGTGCCAAGTGC
AAAGTCCTATCCTCTTGAA
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