FC878207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_NOSP7 (Ribosomal RNA large subunit methyltransferase N OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rlmN PE=3 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.224e-63 Identity = 123/238 (51.68%), Postives = 166/238 (69.75%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGP---MRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S EL GQ +YRGKQLH IY + V+ + + + +R ++ E +GR + A DGTVK L++L D ++IETVGIP E+G RLT CVS+QVGCP+ C FCATGKGG+ RNL+ HEI+ QVL ++E F+ RV+NVVFMG+GEP+LN ++VL A + LN+D+ IGQR +T+STVG+ + I++ A LQ TLA+SLHAPNQ LRE ++PSA++YPLE Sbjct: 24 LLGASVAELSAWVQQQGQPAYRGKQLHEWIYDKGVRSLADISVFSKQWRAEVAEI--PIGRSTLHYRSVAPDGTVKYLLRLTDGQIIETVGIPTFAERGEGPKARLTVCVSTQVGCPMACDFCATGKGGYKRNLARHEIIDQVLTVQEDFQQRVSNVVFMGLGEPLLNTENVLAALKSLNQDIGIGQRSLTVSTVGIRDRIRQFAQNNLQITLAVSLHAPNQALREKLIPSARAYPLE 259
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNSC (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain CC9605) GN=rlmN PE=3 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.599e-63 Identity = 127/241 (52.70%), Postives = 161/241 (66.80%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQS------TLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S ELQ AV GQ+ +RG+QLH IY + + + + P+++R L EAG VGRL A D T KLL+ ED IETVGIP + RLT CVSSQVGCP+ C FCATGKGG R+L +HEIV QVL++ E R +++VFMGMGEP+LN +VLEA RCLN D+ IGQR IT+STVGVP T+ +LA +Q TLA+SLHAPNQ+LRE ++P+A +YP + Sbjct: 5 LLGRSAAELQDWAVAQGQKPFRGRQLHDWIYAKGARSLADITVFPKTWRAALVEAGVDVGRLKEVHHSVATDATTKLLLSTEDGETIETVGIPTDQ-----RLTVCVSSQVGCPMACRFCATGKGGLQRSLQTHEIVDQVLSVREAMDRRPSHIVFMGMGEPLLNSSAVLEAIRCLNDDLGIGQRRITVSTVGVPKTLPQLAELAMQRLGRAQFTLAVSLHAPNQRLREELIPTAHAYPYD 240
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMT (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus (strain NATL2A) GN=rlmN PE=3 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.599e-63 Identity = 121/251 (48.21%), Postives = 174/251 (69.32%), Query Frame = 3 Query: 135 SRAPRVDANV-LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASY------KLQSTLAISLHAPNQKLRESIVPSAKSYPL 866 ++ P++ +N LLG+S ++L++ A G++S+RG+Q+H IY+R K +++ LP+ +R+ L G +GRL V A D T+KLL+ D ++ETVGIP + RLT CVSSQ+GCP+ C FCATGKGG +R+L +EIV QV+++ E R T+VVFMGMGEP+LN+++VL++ CL D+ IGQR IT+STVG+PNT+ LA +++ TLA+SLHAPNQ LRE I+PSA SYP+ Sbjct: 2 TKLPKLSSNSSLLGLSSEDLEEFARQEGEKSFRGRQIHEWIYQRGAKSLDSISVLPKKWRDSLVRKGIQIGRLDEINRVVAEDETLKLLMGTFDGEIVETVGIPTDK-----RLTVCVSSQIGCPMGCKFCATGKGGLNRSLDVNEIVDQVISVRETMNRRPTHVVFMGMGEPLLNIRNVLDSIECLTSDIGIGQRKITVSTVGIPNTLSDLAKLAQDRLGRVKFTLAVSLHAPNQTLRELIIPSASSYPI 247
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJA (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. (strain JA-3-3Ab) GN=rlmN PE=3 SV=1) HSP 1 Score: 242.662 bits (618), Expect = 2.088e-63 Identity = 125/235 (53.19%), Postives = 166/235 (70.64%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S L+ AV+ GQ +YRG+QLH +Y + ++ ++ P+++R LQE + VGR + + + + DGTVK L++L D LIETVGIP RLT CVSSQVGCP+ C+FCATGK G+ RNL HEI+ QVL ++E F RV++VVFMGMGEP+LN +V++A R LN+D+ IGQR IT+STVGVP I LA LQ TLA+SLHAPNQ+LR+ ++PSA YPL+ Sbjct: 8 LLGQSLAALKDWAVEQGQPAYRGQQLHTWLYHKGIRSLQEVTVFPKAWREALQE--YPVGRSQVVQRIESRDGTVKFLLQLADGELIETVGIPTA-----RRLTVCVSSQVGCPMACNFCATGKMGYRRNLKLHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIPWLAQQDLQITLAVSLHAPNQELRQQLIPSAAHYPLD 235
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_GLOVI (Ribosomal RNA large subunit methyltransferase N OS=Gloeobacter violaceus GN=rlmN PE=3 SV=1) HSP 1 Score: 241.506 bits (615), Expect = 4.652e-63 Identity = 123/235 (52.34%), Postives = 162/235 (68.94%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S +EL+ GQ +YR +QLH +Y+R V+ + P+++R + VGR + R AADGT+K L+ D +ETVGIP + RLT CVSSQVGCP+ C FCATG+ GF+RNL HEIV QVL ++E F RV++VVFMGMGEP+LNL +V++A R LN D+ IGQR IT+STVGVP I++L +YKLQ TLA+SLHAPNQ LR ++P+A+ YP+E Sbjct: 5 LLGQSAEELRIWVESQGQPAYRAQQLHRWLYQRGVRSLMEITDWPKAWREQVHSV--PVGRSQVVRQSAAADGTIKYLLAGADGETVETVGIPAAE-----RLTVCVSSQVGCPMACRFCATGQSGFARNLGVHEIVDQVLTVQEGFGRRVSHVVFMGMGEPLLNLGAVVQALRVLNGDIGIGQRQITVSTVGVPGQIRRLGTYKLQITLAVSLHAPNQDLRLKLIPTAQHYPIE 232
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ANASP (Ribosomal RNA large subunit methyltransferase N OS=Anabaena sp. (strain PCC 7120) GN=rlmN PE=3 SV=2) HSP 1 Score: 241.506 bits (615), Expect = 4.652e-63 Identity = 128/259 (49.42%), Postives = 172/259 (66.41%), Query Frame = 3 Query: 93 VSVTPRRKLSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +S TP +L+ SS + P + LLG S EL GQ +YRGKQLH IY + V+ + + + +R + + +GR I A+DGTVK L++L D ++E VGIP + RLT CVS+QVGCP+ C FCATGKGG+ RNL HEIV QVL ++E F+ RV++VVFMGMGEP+LN ++VL R LN+DV IGQR +T+STVG+ + I +LA + LQ TLA+SLHAPNQ LRE ++PSA+SY +E Sbjct: 1 MSATPVTQLTPSSQPQQP---CSPLLGASVTELTSWVQQQGQPAYRGKQLHDWIYHKGVRSLTDISVFSKQWRAAVADV--PIGRSTIHHRSVASDGTVKYLLQLSDGEIVEAVGIPTDK-----RLTVCVSTQVGCPMACDFCATGKGGYKRNLERHEIVDQVLTVQEDFQQRVSHVVFMGMGEPLLNTENVLAGLRSLNQDVGIGQRSLTLSTVGIRDRISELAEHHLQVTLAVSLHAPNQALREQLIPSARSYHIE 249
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROMA (Ribosomal RNA large subunit methyltransferase N OS=Prochlorococcus marinus GN=rlmN PE=3 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 1.354e-62 Identity = 123/241 (51.04%), Postives = 168/241 (69.71%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKL------QSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG+ +L++LA+D G+ YRG+QLH +Y++ V +++ LP+++RN L + G +VG L A D T+KLL+ D +IETVGIP + RLT CVSSQ+GCP+ C FCATGK G R+L +EIV QV A+++ F +NVVFMGMGEP+LN++ VL + CLNKD+ IGQR IT+STVGV NT+ +LA L Q TLA+SLHAPNQKLRES++PSA++YP++ Sbjct: 8 LLGLDLSQLERLALDHGESLYRGRQLHQWLYQKGVDNLDDITVLPKAWRNSLIQKGISVGGLVEVNRFIAGDRTIKLLLSTGDGEIIETVGIPSGN-----RLTICVSSQIGCPMGCQFCATGKDGLKRSLKVNEIVAQVFAVKKAFNRSPSNVVFMGMGEPLLNIEEVLSSICCLNKDLGIGQRRITVSTVGVKNTLPQLAELALQFLGSVQFTLALSLHAPNQKLRESLIPSAQNYPIK 243
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CYAA5 (Ribosomal RNA large subunit methyltransferase N OS=Cyanothece sp. (strain ATCC 51142) GN=rlmN PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.768e-62 Identity = 125/234 (53.42%), Postives = 163/234 (69.66%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866 LLG S +L GQ +YRGKQLH +Y++ V+ + P+++R +L++ + +GR I A D T K L+ L D +IETVGIP RLT CVSSQVGCP+ C FCATGKGG++RNL+ EIV QVL ++E F+ RV++VVFMGMGEP+LNLK V++A + LN+DV IGQR +TISTVGVP I +LA ++LQ T A+SLHA NQ LRE ++PSAKSYPL Sbjct: 8 LLGKSVGQLTDWVKQQGQPAYRGKQLHQWLYQKGVRSLTEISVFPKAWREELKD--YPIGRSNIVHCTIAPDQTRKYLLSLGDGLIIETVGIPTSK-----RLTVCVSSQVGCPMNCDFCATGKGGYTRNLTCAEIVDQVLTVQEDFQRRVSHVVFMGMGEPLLNLKEVIKAVKILNQDVGIGQRSLTISTVGVPKKILELAHHQLQVTFAVSLHAANQTLREQLIPSAKSYPL 234
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNJB (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus sp. GN=rlmN PE=3 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 2.309e-62 Identity = 127/235 (54.04%), Postives = 162/235 (68.94%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG S L+ AV GQ +YRG+QLH IY++ ++ +E P+++R +Q + VGR I + A DGTVK L+ L D +LIETVGIP RLT CVSSQVGCP+ C FCATGK G+ RNL HEI+ QVL ++E F RV++VVFMGMGEP+LN +V++A R LN+D+ IGQR IT+STVGVP I LA LQ TLA+SLHAPNQ LR+ ++PSA YPL+ Sbjct: 8 LLGQSLSALKDWAVAQGQPAYRGQQLHAWIYQKGIRSLEQVTVFPRAWREAVQS--YPVGRSRIVQRTEARDGTVKFLLGLADGQLIETVGIPTAK-----RLTVCVSSQVGCPMACDFCATGKMGYRRNLELHEILDQVLTVQEDFGRRVSHVVFMGMGEPLLNRDTVVQAIRSLNQDIGIGQRHITLSTVGVPRQIAWLAQQDLQVTLAVSLHAPNQDLRQRLIPSASHYPLD 235
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SYNE7 (Ribosomal RNA large subunit methyltransferase N OS=Synechococcus elongatus (strain PCC 7942) GN=rlmN PE=3 SV=1) HSP 1 Score: 238.039 bits (606), Expect = 5.144e-62 Identity = 124/244 (50.82%), Postives = 164/244 (67.21%), Query Frame = 3 Query: 153 DANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIGQRMITISTVGVPNTIKKLASYK------LQSTLAISLHAPNQKLRESIVPSAKSYPL 866 DA LLG S ELQ V GQ SYR KQL+ +Y+R + + P+++R LQ VGR I + GT+K L++L D +IE VGIP D RLT CVSSQ+GC + C FCATGKGGF R+L+ HEI+ QVL ++E ++ RV+N+VFMGMGEP+LNL +VL A RCLN+D+ IGQR IT+STVG+P I++LA K LQ TLA+SLHAPNQ +R+ ++PS++ YP+ Sbjct: 13 DATPLLGRSLPELQDWVVAQGQPSYRAKQLYQWLYERSIHNLAEISVFPKAWRQSLQAV--PVGRSQIVDRSVSPSGTIKYLLRLHDGEIIEAVGIPSGD-----RLTVCVSSQLGCAMACDFCATGKGGFRRHLAPHEIIDQVLTVQEDWQQRVSNIVFMGMGEPLLNLDAVLAAIRCLNQDIGIGQRGITVSTVGIPGHIRRLAETKRVGDRPLQFTLAVSLHAPNQAIRDRLIPSSRHYPI 249 The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bpback to top |