FC878207

Overview
NameFC878207
Unique NameFC878207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC878207_ssr125 microsatellite FC878207_ssr125:125..136. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig2991 contig Ccv1_Contig2991:80..948. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_COXB1 (Ribosomal RNA large subunit methyltransferase N OS=Coxiella burnetii (strain CbuK_Q154) GN=rlmN PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 8.537e-41
Identity = 108/240 (45.00%), Postives = 141/240 (58.75%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWT-VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK--HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LL +SE ELQ      GQ  YR  QL   I++R V +      L + FR  L EA +  V  L + R   +ADGT K L +L DN  IETV IP  D K   R T CVSSQVGC L CSFCATGK GF+RNL+  EI+GQV     + K  +++TNVV MGMGEP+LN ++V+ A   +  D   G  +  +T+ST GV   +++L   +   +LA+SLHAPN  LR  ++P  K Y L+
Sbjct:    7 LLNLSETELQGFIASQGQPLYRATQLLQWIHQRGVTDFSLMTDLSKPFRQQLSEASFVRVPELALERV--SADGTHKWLFRLADNNKIETVFIP--DRK---RGTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVVMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLRE-ESPVSLAVSLHAPNDALRNVLIPLNKKYSLD 238          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_HALHL (Ribosomal RNA large subunit methyltransferase N OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.115e-40
Identity = 96/238 (40.34%), Postives = 142/238 (59.66%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG+    L      LG++ +R +Q+   +++R V + +    L ++ R  L+E    VG   +     A+DGT K +++L D   +E V IP      P R T C+SSQ GCP+ C+FCATG+GGFSRNL++ EIVGQV +A + + +  +TN+VFMGMGEP+LN   V+ A R    D    + +R +TIST GV + I+++       +LA+SLHAPN +LR  +VP  +  PLE
Sbjct:   12 LLGLDRPRLAAFFDTLGEKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHA-RVGLPEVAADQQASDGTRKWVVRLADGNCVEAVYIPE-----PKRGTLCISSQAGCPMGCTFCATGEGGFSRNLTAAEIVGQVHVARQHLPEGAITNIVFMGMGEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRV-TDVSLAVSLHAPNNELRNQLVPLNRKNPLE 242          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PETMO (Ribosomal RNA large subunit methyltransferase N OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rlmN PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.902e-40
Identity = 95/238 (39.92%), Postives = 142/238 (59.66%), Query Frame = 3
Query:  165 LLGMSEQELQK-LAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +L     +LQ  L  +LG + +R  Q+   IYK++V + E+   L +  R  L +         + + V+  DGT K L++LED   +E V I       P R  AC+S+QVGCPL+CSFC+TG+ G+ RNLS+ EI+GQ+LA+E+  +  V NVV+MGMGEP+LN  +V++    LN  K  ++G R ITIST G+P  I+++     +  L++SLHAP    R+ I+P    YP+E
Sbjct:    6 ILDFEYSDLQSYLLNELGLEKFRTDQICDWIYKKRVFDFESMTNLSKDDRQKLSDNFKISIPHIVKKEVSKIDGTTKYLLELEDKNTVEAVIIYY-----PSRTIACISTQVGCPLKCSFCSTGQSGYVRNLSTGEIIGQLLAMEKDKEMDVKNVVYMGMGEPLLNFNNVVQTIEILNHPKMKKLGARHITISTAGIPQKIEEVGDLNKEFRLSVSLHAPTNLQRDQIMPINHKYPVE 238          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THELT (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rlmN PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.484e-40
Identity = 97/239 (40.59%), Postives = 143/239 (59.83%), Query Frame = 3
Query:  159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            N+L    E+ +QK+  +LG + YR  Q+   IYK+ V   E    L +  R+ L+E         + + V++ D T K L +L D   IE+V +  E        TAC+S+Q+GCP++CSFCATG+ GF RNL + EIV Q+LAIE+  K  V N+V+MGMGEP+LN  +V+++ + L   K   IG R +T+STVG+P  I KL+  +L   LAISLHA   + R+ I+P  + Y ++
Sbjct:    2 NILSMTYEKFVQKIQ-ELGLEKYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLRENFCIQIPKIVSKRVSSIDKTTKYLYELSDGNTIESVLLFHEGYA-----TACISTQIGCPVKCSFCATGQSGFVRNLDAGEIVSQILAIEKDSKQTVRNIVYMGMGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHASTNEKRDQIIPINRKYSIQ 234          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEPX (Ribosomal RNA large subunit methyltransferase N OS=Thermoanaerobacter sp. (strain X514) GN=rlmN PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.237e-40
Identity = 99/238 (41.60%), Postives = 146/238 (61.34%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            L  M+ +E+++  V++G+  YR KQ++  IY +KV + +    + ++ R+ L+E  + V +L I  R V+  D TVK L  LED  +IE V I     K     TACVS+QVGC +RCSFCA+  GG  R+L + E+V QV+AI+  +  +++N+V MG GEP  N   V++  + +N    + IG R ITIST G+   I + A  KLQ  L+ISLHAPN +LR  ++P  K+YPLE
Sbjct:    4 LKDMTLEEMEEFFVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEIAY-VSQLKIEERRVSEIDDTVKYLFLLEDGNIIEGVAI-----KYRFGNTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVMAIDSDYG-KISNIVLMGSGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLE 234          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEP3 (Ribosomal RNA large subunit methyltransferase N OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rlmN PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.237e-40
Identity = 99/238 (41.60%), Postives = 146/238 (61.34%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            L  M+ +E+++  V++G+  YR KQ++  IY +KV + +    + ++ R+ L+E  + V +L I  R V+  D TVK L  LED  +IE V I     K     TACVS+QVGC +RCSFCA+  GG  R+L + E+V QV+AI+  +  +++N+V MG GEP  N   V++  + +N    + IG R ITIST G+   I + A  KLQ  L+ISLHAPN +LR  ++P  K+YPLE
Sbjct:    4 LKDMTLEEMEEFFVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEIAY-VSQLKIEERRVSEIDDTVKYLFLLEDGNIIEGVAI-----KYRFGNTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVMAIDSDYG-KISNIVLMGSGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLE 234          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEM4 (Ribosomal RNA large subunit methyltransferase N OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rlmN PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 5.534e-40
Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +L +  +EL      +G + YR  Q+ + IYK+KV E E    L +  R  L E  +      +   ++  D T K L +L D   IE+V +         R+TAC+S+QVGCP++C FCATG+ GF RNL+  EIV Q+LAIE   K +V NVV+MGMGEP+LN ++V+++ + LN  K + IG R IT+STVG+P  I  LA   L   LA+SLHA     R+ I+P  K Y +E
Sbjct:    4 ILDLKYEELVNEFQRIGLEKYRVDQVLNWIYKKKVFEFEKMTNLSKEHRKLLSEKFFIDLPKLLDMQISKIDKTTKFLWELRDGNTIESVALFHSG-----RVTACISTQVGCPVKCEFCATGQSGFVRNLTVGEIVSQILAIELNRKIKVGNVVYMGMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLALSLHAVTDYKRDQIIPLNKKYSVE 235          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THETN (Ribosomal RNA large subunit methyltransferase N OS=Thermoanaerobacter tengcongensis GN=rlmN PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 94/237 (39.66%), Postives = 144/237 (60.76%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            L  M+ +E+++  V+LG+  +R KQL+  IY ++V + +    + ++ R  L+E  +      I R V+  D TVK L  LED  +IE V I     K     TACVS+QVGC ++C FCA+  GG  R+L + E+V QV+AI+  +  +++N+V MG GEP  N   V++  + +N    ++IG+R ITISTVG+   I + A  +LQ  L+ISLHAPN +LR  ++P  ++YPLE
Sbjct:    4 LKDMTLEEMEEFFVNLGESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEIAYISELKIIERRVSQIDDTVKYLFLLEDKNIIEGVAI-----KYKFGNTACVSTQVGCNMKCKFCASAIGGKVRDLKASEMVDQVMAIDSDYG-KISNIVLMGSGEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNELRNELMPINRAYPLE 234          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SALRD (Ribosomal RNA large subunit methyltransferase N OS=Salinibacter ruber (strain DSM 13855) GN=rlmN PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 101/240 (42.08%), Postives = 136/240 (56.67%), Query Frame = 3
Query:  147 RVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR-LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP 845
            RVD   L  M    L+    + G   YRG QL + +Y + V + +    LP+  R  LQ    TV  + I     AAD TVK L +L   R  ETV IP  DE+G  R LT CVSS+VGC + C FCATG+ GF  NL+   I  QV  + E+    F   VTN+VFMGMGEP+LN  +VL++   L  +  + +  + IT+STVG+   IK LA  +L++ LA+SLHAP+ + R  I+P
Sbjct:   17 RVD---LKTMGRAGLKDFVAEHGAPRYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGLQRDA-TVEDIEIVEQQQAADRTVKALFELPSGREAETVLIPAIDERGEARRLTVCVSSEVGCAMGCEFCATGRMGFRENLTPGAIFDQVWHMNEVAQEHFGRPVTNIVFMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVGLARRIKDLADDQLRTNLAVSLHAPDNETRSRIMP 252          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROVI (Ribosomal RNA large subunit methyltransferase N OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rlmN PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39
Identity = 100/255 (39.22%), Postives = 152/255 (59.61%), Query Frame = 3
Query:  156 ANVLLGMSEQELQKLA---VDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-----TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK---DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP-SAKSYPLE 869
            A  L  +++  LQ+L     ++ + ++R KQ+H  ++  + +  E    L ++ R  L+E  + +    + +   + +G     T KLL++L D  +IETV IP     GP RLTAC+SSQ GC L+CSFCATG  GF RNL+  EI GQ  A+  +      + ++TN+VFMGMGEP+LN  +V +A   L+       I QR ITISTVG+   I KLA+  +++ LA+SLH+  Q+ RES++P +A+ YPL+
Sbjct:   14 AKTLQNITDLTLQQLTGRLAEMKEPAWRAKQIHEWLFSHRAESFEEMTTLSKALRKALEET-FAITPPEVEQHDNSTEGACPGPTEKLLLRLPDGAMIETVLIP-----GPGRLTACLSSQAGCALQCSFCATGSLGFKRNLTPGEITGQANALNSMLAASGREQKITNIVFMGMGEPLLNTLNVFDAVETLSTRGYTSSISQRKITISTVGIIPEIAKLATSGMKTKLAVSLHSAFQEKRESLMPLAARRYPLD 262          
The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_COXB18.537e-4145.00Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_HALHL1.115e-4040.34Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PETMO1.902e-4039.92Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THELT2.484e-4040.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEPX4.237e-4041.60Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEP34.237e-4041.60Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THEM45.534e-4041.77Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_THETN2.103e-3939.66Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SALRD2.103e-3942.08Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROVI2.103e-3939.22Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTAGGT
TGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAAG
AAATCTTTCAAGCCATGAAATTGTTGGGCAGGTGTTAGCAATTGAAGAGA
TCTTCAAGCATAGGGTGACAAACGTAGTGTTCATGGGAATGGGCGAGCCA
ATGTTGAACCTAAAGTCTGTGCTTGAAGCACATCGATGTTTGAATAAGGA
TGTGCAAATTGGACAAAGGATGATTACAATTTCCACTGTGGGGGTTCCGA
ACACAATTAAAAAGTTGGCCTCTTACAAACTTCAGTCAACATTGGCTATC
AGCTTACATGCTCCAAACCAGAAACTGAGGGAATCAATTGTGCCAAGTGC
AAAGTCCTATCCTCTTGAA
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