FC878207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_COXB1 (Ribosomal RNA large subunit methyltransferase N OS=Coxiella burnetii (strain CbuK_Q154) GN=rlmN PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 8.537e-41 Identity = 108/240 (45.00%), Postives = 141/240 (58.75%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWT-VGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK--HRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LL +SE ELQ GQ YR QL I++R V + L + FR L EA + V L + R +ADGT K L +L DN IETV IP D K R T CVSSQVGC L CSFCATGK GF+RNL+ EI+GQV + K +++TNVV MGMGEP+LN ++V+ A + D G + +T+ST GV +++L + +LA+SLHAPN LR ++P K Y L+ Sbjct: 7 LLNLSETELQGFIASQGQPLYRATQLLQWIHQRGVTDFSLMTDLSKPFRQQLSEASFVRVPELALERV--SADGTHKWLFRLADNNKIETVFIP--DRK---RGTLCVSSQVGCALNCSFCATGKEGFNRNLTLAEIIGQVWLAARLLKSPYKITNVVMMGMGEPLLNYEAVVAAMHLMMHDHAYGLSKYRVTLSTSGVIPAMRRLRE-ESPVSLAVSLHAPNDALRNVLIPLNKKYSLD 238
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_HALHL (Ribosomal RNA large subunit methyltransferase N OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=rlmN PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.115e-40 Identity = 96/238 (40.34%), Postives = 142/238 (59.66%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV-LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG+ L LG++ +R +Q+ +++R V + + L ++ R L+E VG + A+DGT K +++L D +E V IP P R T C+SSQ GCP+ C+FCATG+GGFSRNL++ EIVGQV +A + + + +TN+VFMGMGEP+LN V+ A R D + +R +TIST GV + I+++ +LA+SLHAPN +LR +VP + PLE Sbjct: 12 LLGLDRPRLAAFFDTLGEKRFRARQIMQWLHQRHVYDFDEMTDLSKALRQRLREHA-RVGLPEVAADQQASDGTRKWVVRLADGNCVEAVYIPE-----PKRGTLCISSQAGCPMGCTFCATGEGGFSRNLTAAEIVGQVHVARQHLPEGAITNIVFMGMGEPLLNFDPVISASRVFTDDYGFVLSKRRVTISTSGVVHAIERMQRV-TDVSLAVSLHAPNNELRNQLVPLNRKNPLE 242
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PETMO (Ribosomal RNA large subunit methyltransferase N OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rlmN PE=3 SV=1) HSP 1 Score: 166.392 bits (420), Expect = 1.902e-40 Identity = 95/238 (39.92%), Postives = 142/238 (59.66%), Query Frame = 3 Query: 165 LLGMSEQELQK-LAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +L +LQ L +LG + +R Q+ IYK++V + E+ L + R L + + + V+ DGT K L++LED +E V I P R AC+S+QVGCPL+CSFC+TG+ G+ RNLS+ EI+GQ+LA+E+ + V NVV+MGMGEP+LN +V++ LN K ++G R ITIST G+P I+++ + L++SLHAP R+ I+P YP+E Sbjct: 6 ILDFEYSDLQSYLLNELGLEKFRTDQICDWIYKKRVFDFESMTNLSKDDRQKLSDNFKISIPHIVKKEVSKIDGTTKYLLELEDKNTVEAVIIYY-----PSRTIACISTQVGCPLKCSFCSTGQSGYVRNLSTGEIIGQLLAMEKDKEMDVKNVVYMGMGEPLLNFNNVVQTIEILNHPKMKKLGARHITISTAGIPQKIEEVGDLNKEFRLSVSLHAPTNLQRDQIMPINHKYPVE 238
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THELT (Ribosomal RNA large subunit methyltransferase N OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=rlmN PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.484e-40 Identity = 97/239 (40.59%), Postives = 143/239 (59.83%), Query Frame = 3 Query: 159 NVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 N+L E+ +QK+ +LG + YR Q+ IYK+ V E L + R+ L+E + + V++ D T K L +L D IE+V + E TAC+S+Q+GCP++CSFCATG+ GF RNL + EIV Q+LAIE+ K V N+V+MGMGEP+LN +V+++ + L K IG R +T+STVG+P I KL+ +L LAISLHA + R+ I+P + Y ++ Sbjct: 2 NILSMTYEKFVQKIQ-ELGLEKYRADQILDWIYKKHVFVFEQMTNLSKQHRSLLRENFCIQIPKIVSKRVSSIDKTTKYLYELSDGNTIESVLLFHEGYA-----TACISTQIGCPVKCSFCATGQSGFVRNLDAGEIVSQILAIEKDSKQTVRNIVYMGMGEPLLNYDNVIKSIKILIDKKTKNIGIRRVTLSTVGIPEMILKLSEERLDLNLAISLHASTNEKRDQIIPINRKYSIQ 234
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEPX (Ribosomal RNA large subunit methyltransferase N OS=Thermoanaerobacter sp. (strain X514) GN=rlmN PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.237e-40 Identity = 99/238 (41.60%), Postives = 146/238 (61.34%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 L M+ +E+++ V++G+ YR KQ++ IY +KV + + + ++ R+ L+E + V +L I R V+ D TVK L LED +IE V I K TACVS+QVGC +RCSFCA+ GG R+L + E+V QV+AI+ + +++N+V MG GEP N V++ + +N + IG R ITIST G+ I + A KLQ L+ISLHAPN +LR ++P K+YPLE Sbjct: 4 LKDMTLEEMEEFFVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEIAY-VSQLKIEERRVSEIDDTVKYLFLLEDGNIIEGVAI-----KYRFGNTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVMAIDSDYG-KISNIVLMGSGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLE 234
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEP3 (Ribosomal RNA large subunit methyltransferase N OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=rlmN PE=3 SV=1) HSP 1 Score: 165.236 bits (417), Expect = 4.237e-40 Identity = 99/238 (41.60%), Postives = 146/238 (61.34%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIF-RTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 L M+ +E+++ V++G+ YR KQ++ IY +KV + + + ++ R+ L+E + V +L I R V+ D TVK L LED +IE V I K TACVS+QVGC +RCSFCA+ GG R+L + E+V QV+AI+ + +++N+V MG GEP N V++ + +N + IG R ITIST G+ I + A KLQ L+ISLHAPN +LR ++P K+YPLE Sbjct: 4 LKDMTLEEMEEFFVNIGESRYRAKQIYKWIYGKKVTDFDQMTDISKNLRSKLKEIAY-VSQLKIEERRVSEIDDTVKYLFLLEDGNIIEGVAI-----KYRFGNTACVSTQVGCNMRCSFCASAIGGKVRDLKASEMVDQVMAIDSDYG-KISNIVLMGSGEPFDNYDEVMKFIKIVNNPHGLGIGSRHITISTCGIVPKIYQFADEKLQVNLSISLHAPNDELRTQLMPINKAYPLE 234
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THEM4 (Ribosomal RNA large subunit methyltransferase N OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=rlmN PE=3 SV=1) HSP 1 Score: 164.851 bits (416), Expect = 5.534e-40 Identity = 99/237 (41.77%), Postives = 139/237 (58.65%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +L + +EL +G + YR Q+ + IYK+KV E E L + R L E + + ++ D T K L +L D IE+V + R+TAC+S+QVGCP++C FCATG+ GF RNL+ EIV Q+LAIE K +V NVV+MGMGEP+LN ++V+++ + LN K + IG R IT+STVG+P I LA L LA+SLHA R+ I+P K Y +E Sbjct: 4 ILDLKYEELVNEFQRIGLEKYRVDQVLNWIYKKKVFEFEKMTNLSKEHRKLLSEKFFIDLPKLLDMQISKIDKTTKFLWELRDGNTIESVALFHSG-----RVTACISTQVGCPVKCEFCATGQSGFVRNLTVGEIVSQILAIELNRKIKVGNVVYMGMGEPLLNFENVIDSIKMLNDKKMLNIGIRRITVSTVGIPEKIIALAESGLNVKLALSLHAVTDYKRDQIIPLNKKYSVE 235
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THETN (Ribosomal RNA large subunit methyltransferase N OS=Thermoanaerobacter tengcongensis GN=rlmN PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39 Identity = 94/237 (39.66%), Postives = 144/237 (60.76%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 L M+ +E+++ V+LG+ +R KQL+ IY ++V + + + ++ R L+E + I R V+ D TVK L LED +IE V I K TACVS+QVGC ++C FCA+ GG R+L + E+V QV+AI+ + +++N+V MG GEP N V++ + +N ++IG+R ITISTVG+ I + A +LQ L+ISLHAPN +LR ++P ++YPLE Sbjct: 4 LKDMTLEEMEEFFVNLGESKFRAKQLYKWIYDKRVTDFDLMTDISKNLRAKLKEIAYISELKIIERRVSQIDDTVKYLFLLEDKNIIEGVAI-----KYKFGNTACVSTQVGCNMKCKFCASAIGGKVRDLKASEMVDQVMAIDSDYG-KISNIVLMGSGEPFDNYDEVMKFIKIVNNPYGLKIGKRHITISTVGIVPKIYQFADEELQVNLSISLHAPNNELRNELMPINRAYPLE 234
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SALRD (Ribosomal RNA large subunit methyltransferase N OS=Salinibacter ruber (strain DSM 13855) GN=rlmN PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39 Identity = 101/240 (42.08%), Postives = 136/240 (56.67%), Query Frame = 3 Query: 147 RVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMR-LTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEI----FKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP 845 RVD L M L+ + G YRG QL + +Y + V + + LP+ R LQ TV + I AAD TVK L +L R ETV IP DE+G R LT CVSS+VGC + C FCATG+ GF NL+ I QV + E+ F VTN+VFMGMGEP+LN +VL++ L + + + + IT+STVG+ IK LA +L++ LA+SLHAP+ + R I+P Sbjct: 17 RVD---LKTMGRAGLKDFVAEHGAPRYRGDQLFNWVYGKGVSDFDRMSNLPKRMRRGLQRDA-TVEDIEIVEQQQAADRTVKALFELPSGREAETVLIPAIDERGEARRLTVCVSSEVGCAMGCEFCATGRMGFRENLTPGAIFDQVWHMNEVAQEHFGRPVTNIVFMGMGEPLLNYDAVLDSISILTDEDSLNLSAQKITVSTVGLARRIKDLADDQLRTNLAVSLHAPDNETRSRIMP 252
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROVI (Ribosomal RNA large subunit methyltransferase N OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=rlmN PE=3 SV=1) HSP 1 Score: 162.925 bits (411), Expect = 2.103e-39 Identity = 100/255 (39.22%), Postives = 152/255 (59.61%), Query Frame = 3 Query: 156 ANVLLGMSEQELQKLA---VDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-----TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-----KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNK---DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP-SAKSYPLE 869 A L +++ LQ+L ++ + ++R KQ+H ++ + + E L ++ R L+E + + + + + +G T KLL++L D +IETV IP GP RLTAC+SSQ GC L+CSFCATG GF RNL+ EI GQ A+ + + ++TN+VFMGMGEP+LN +V +A L+ I QR ITISTVG+ I KLA+ +++ LA+SLH+ Q+ RES++P +A+ YPL+ Sbjct: 14 AKTLQNITDLTLQQLTGRLAEMKEPAWRAKQIHEWLFSHRAESFEEMTTLSKALRKALEET-FAITPPEVEQHDNSTEGACPGPTEKLLLRLPDGAMIETVLIP-----GPGRLTACLSSQAGCALQCSFCATGSLGFKRNLTPGEITGQANALNSMLAASGREQKITNIVFMGMGEPLLNTLNVFDAVETLSTRGYTSSISQRKITISTVGIIPEIAKLATSGMKTKLAVSLHSAFQEKRESLMPLAARRYPLD 262 The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bpback to top |