FC878207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THICR (Ribosomal RNA large subunit methyltransferase N OS=Thiomicrospira crunogena (strain XCL-2) GN=rlmN PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.363e-38 Identity = 100/244 (40.98%), Postives = 140/244 (57.38%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLGM EL + +G++ +R Q+ I++ V + E + +S R L + R P I +ADGT+K L++++++ +E V IP E +G T C+SSQVGC L CSFC+TG+ GF+RNL + EIV Q+ L + + ++NVVFMGMGEP+LN+K R L D G +R +TIST GV I K+ L +LAISLHAPN LR+ +VP K YPLE Sbjct: 11 LLGMDRAELTEFFASIGEKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKLSKTALI--RTPKIVSEQRSADGTIKWLLEVDNHNCVEAVFIP-EKSRG----TLCISSQVGCALECSFCSTGQQGFNRNLENWEIVAQMWVANKALGCKPKEERIISNVVFMGMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKE-SLDVSLAISLHAPNNALRDELVPINKKYPLE 246
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SACD2 (Ribosomal RNA large subunit methyltransferase N OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rlmN PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.363e-38 Identity = 98/260 (37.69%), Postives = 149/260 (57.31%), Query Frame = 3 Query: 117 LSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 ++V S++ +V+ L+G+S+ +L+ LG++ +R Q+ I++ V + E + + R+ L + V + ++DGT K LI++ +ETV IP D R T CVSSQVGC L CSFCATGK GF+R+L++ EI+GQV + F + ++TNVV MGMGEP+LN +V+++ + D + +R +T+ST GV + KL Y + LAISLHAPN LR +VP K YP+E Sbjct: 1 MTVESTAAPAKVN---LMGLSQAKLEAFFDSLGEKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLSQVAEAVAP-EVVNQWDSSDGTRKFLIRVGGGNAVETVYIPDGD-----RGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGVGAQRKITNVVMMGMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEY-TDACLAISLHAPNNALRNELVPINKKYPIE 250
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PSYCK (Ribosomal RNA large subunit methyltransferase N OS=Psychrobacter cryohalolentis (strain K5) GN=rlmN PE=3 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 1.363e-38 Identity = 99/253 (39.13%), Postives = 142/253 (56.13%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----------------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLGM++ +L +G++ +R Q+ IY++ V + E L +S R+ L + I R + DGT K + ++ L+ETV IP +D K R T CVSSQVGC L CSFC+TGK GF R+L++ EI+GQ+ ++++ VTNVV MGMGEP+LN + V+ + + D G +R +T+ST GV + +LA +L LAISLHAPN +LR +VP K YPLE Sbjct: 35 LLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLSANACVIPPKVIHRQYSD-DGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCVSSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQ-ELDVALAISLHAPNDELRNELVPINKKYPLE 285
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PSYA2 (Ribosomal RNA large subunit methyltransferase N OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38 Identity = 98/253 (38.74%), Postives = 142/253 (56.13%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----------------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLGM++ +L +G++ +R Q+ IY++ V + E L +S R+ L + I R + DGT K + ++ L+ETV IP +D K R T C+SSQVGC L CSFC+TGK GF R+L++ EI+GQ+ ++++ VTNVV MGMGEP+LN + V+ + + D G +R +T+ST GV + +LA +L LAISLHAPN +LR +VP K YPLE Sbjct: 31 LLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLSANACVIPPKVIHRQYSD-DGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCISSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMSDENDSLENIDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAK-ELDVALAISLHAPNDELRNELVPINKKYPLE 281
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PELLD (Ribosomal RNA large subunit methyltransferase N OS=Pelodictyon luteolum (strain DSM 273) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38 Identity = 99/248 (39.92%), Postives = 143/248 (57.66%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTA----ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNK---DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP-SAKSYPLE 869 +L + EL++ + + +R QLH ++ + ++ L R L E+ + + T A T KLLI+L D +ETV IP GP R+TACVS+Q GC L CSFCATG+ GF RNLSS EI GQV A+ ++ + R ++N+VFMGMGEP+LN +V+EA L+ QR ITISTVG+ I +LA L++ LA+SLH+ Q+ RE+++P +A+ YPL+ Sbjct: 8 ILNLRMDELKEALAAINEPQWRAAQLHQWLFSHRAGSFDDMTTLSLPLRRKLAESFYIQQPVTEKHDETMEGSPAGATEKLLIQLPDGERVETVLIP-----GPNRMTACVSAQAGCLLGCSFCATGQMGFRRNLSSGEITGQVWALSDMLQERNREASISNIVFMGMGEPLLNTANVIEAVLNLSTRKYRFSTSQRKITISTVGITPEIDRLADTGLKTKLAVSLHSAIQEKREALMPQAARQYPLD 250
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_DESVM (Ribosomal RNA large subunit methyltransferase N OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38 Identity = 97/245 (39.59%), Postives = 148/245 (60.41%), Query Frame = 3 Query: 165 LLGMSEQELQK-LAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI--GQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +L ++ EL+ + LG+ +R +Q+ ++++ + + + ++ R L EA P RTV T++DGTVK L+ L D L+ETV IP E +G +R+T C+S QVGC + C+FC+TG GF RN++ EI+GQVL A E + R V N+VFMGMGEP+LNL V+ + R LN + + R IT+ST G+ +++L L + LA+SLHAPNQ++R I+P A + L+ Sbjct: 4 ILNLTYDELEAWMTGTLGEPRFRARQVWQWLWQKNARSFDAMTNVSKATRARLAEAARITW--PEVRTVKTSSDGTVKFLLALADGALVETVLIPSESREGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCFSPRRITVSTCGIEKGLRELGESGL-AFLAVSLHAPNQEVRARIMPRAARWTLD 245
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_DESHD (Ribosomal RNA large subunit methyltransferase N OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38 Identity = 95/239 (39.75%), Postives = 138/239 (57.74%), Query Frame = 3 Query: 174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +++ EL + +LG +RG+Q+ + ++ V+ E + R LQE G + L R A DGT K L + D +E V + + K R T CVS+Q+GC + C+FCATG GG+ RNLS EI+GQVL I + + +VTN+VFMGMGEP+LN ++VL+A LN + IG R +TIST GV I++LA Q LA+SLH+ + R+ ++P + YPLE Sbjct: 12 LNQSELTQHCAELGLPKFRGRQVFQWVQQKAVQNWEELRNIGAGDRQKLQE-GLFLQPLRKVREQIAQDGTRKFLFRCADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLE 249
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_GEMAT (Ribosomal RNA large subunit methyltransferase N OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38 Identity = 95/221 (42.99%), Postives = 130/221 (58.82%), Query Frame = 3 Query: 213 GQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRV-TNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866 G+ +YR Q+ +++R V+ + +LP++ R L + + L + + DGT K L ++ D +LIETV IP D RLT C+SSQ GC L+C+FCATG GF RNL EI GQV + + V TN+VFMGMGEP++N K+V LN + + IG R ITISTVGV I LA+ Q LAIS+HAP+ LR +++P YPL Sbjct: 27 GEPAYRAAQVFGRLWQRPVRSFDEMTELPKALREGLA-GSFRITALELTTRQKSMDGTEKFLFRMHDGQLIETVAIPDGD-----RLTFCISSQAGCALQCAFCATGAMGFQRNLHPSEIAGQVRELRMLTPSIVPTNIVFMGMGEPLMNWKAVSPTLSLLNDPRALGIGARHITISTVGVLPGIVALAARPEQFRLAISIHAPSDALRRTLMPVNTKYPL 241
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHRSD (Ribosomal RNA large subunit methyltransferase N OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38 Identity = 97/241 (40.25%), Postives = 139/241 (57.68%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSY 860 LLG++ +E++ V LG++ +R Q+ I+ + + L ++ R L+E G ++ T+ DGT K ++++ED +ETV IP E G R T CVSSQVGC L CSFC+TGK GF RNL+S EI+GQV F R VTNVV MGMGEP+LN +V+ A + + D G +R +T+ST GV + +L +L +LA+SLHA N +LR +VP + Y Sbjct: 12 LLGLTREEMESFFVSLGEKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRLEELAEIRGPRVVYEG-TSQDGTRKWVLEVEDGSYVETVLIPAE---GGKRRTLCVSSQVGCSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFGARRDTTNRPVTNVVMMGMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGD-ELDVSLAVSLHAANDELRNELVPLNRKY 247
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CAMHC (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38 Identity = 102/245 (41.63%), Postives = 144/245 (58.78%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE----KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSY 860 LL S EL +L + +R KQ++ IY + V + LP R DL + +G L + + + DG+ K L +L+D + IE+V +P++DE G + R T CVSSQVGC + C+FC T KGGF RNLS+ EIV Q+ I++I K R NVV+MGMGEP+ NL++V +A + L N+ + I R TIST G+ + IKKL L LAISLHA N +LRE ++P ++Y Sbjct: 4 LLDFSLDELGELL----KPKFRAKQIYEWIYHKNVDDFLQMKNLPLQMREDLANEFY-IGGLNVSKCEQSVDGSKKYLFELKDGKTIESVLLPMKDEITDENGEILRHKRYTICVSSQVGCKIGCAFCLTAKGGFVRNLSAGEIVEQIRLIKKINKIPYERRINVVYMGMGEPLNNLENVAKAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGEMNLGVLLAISLHAVNDELREKLMPINRAY 243 The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bpback to top |