FC878207

Overview
NameFC878207
Unique NameFC878207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_THICR (Ribosomal RNA large subunit methyltransferase N OS=Thiomicrospira crunogena (strain XCL-2) GN=rlmN PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.363e-38
Identity = 100/244 (40.98%), Postives = 140/244 (57.38%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLP-IFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQV------LAIEEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLGM   EL +    +G++ +R  Q+   I++  V + E    + +S R  L +      R P I     +ADGT+K L++++++  +E V IP E  +G    T C+SSQVGC L CSFC+TG+ GF+RNL + EIV Q+      L  +   +  ++NVVFMGMGEP+LN+K      R L  D   G  +R +TIST GV   I K+    L  +LAISLHAPN  LR+ +VP  K YPLE
Sbjct:   11 LLGMDRAELTEFFASIGEKPFRAAQVMKWIHQFGVSDFEEMTNISKSLREKLSKTALI--RTPKIVSEQRSADGTIKWLLEVDNHNCVEAVFIP-EKSRG----TLCISSQVGCALECSFCSTGQQGFNRNLENWEIVAQMWVANKALGCKPKEERIISNVVFMGMGEPLLNVKHTFPTARILMDDNAYGLSKRRVTISTAGVVPAIDKIKE-SLDVSLAISLHAPNNALRDELVPINKKYPLE 246          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_SACD2 (Ribosomal RNA large subunit methyltransferase N OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rlmN PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.363e-38
Identity = 98/260 (37.69%), Postives = 149/260 (57.31%), Query Frame = 3
Query:  117 LSVSSSSRAPRVDANVLLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD--VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            ++V S++   +V+   L+G+S+ +L+     LG++ +R  Q+   I++  V + E    + +  R+ L +    V    +     ++DGT K LI++     +ETV IP  D     R T CVSSQVGC L CSFCATGK GF+R+L++ EI+GQV    + F       + ++TNVV MGMGEP+LN  +V+++   +  D    + +R +T+ST GV   + KL  Y   + LAISLHAPN  LR  +VP  K YP+E
Sbjct:    1 MTVESTAAPAKVN---LMGLSQAKLEAFFDSLGEKRFRATQVLKWIHQMGVTDFEQMTNISKPLRDKLSQVAEAVAP-EVVNQWDSSDGTRKFLIRVGGGNAVETVYIPDGD-----RGTLCVSSQVGCSLDCSFCATGKQGFNRDLTAAEIIGQVWQAAKSFNQFGVGAQRKITNVVMMGMGEPLLNFDNVVDSMNLMMHDNCYGLSKRRVTLSTSGVVPALDKLGEY-TDACLAISLHAPNNALRNELVPINKKYPIE 250          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PSYCK (Ribosomal RNA large subunit methyltransferase N OS=Psychrobacter cryohalolentis (strain K5) GN=rlmN PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.363e-38
Identity = 99/253 (39.13%), Postives = 142/253 (56.13%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----------------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLGM++ +L      +G++ +R  Q+   IY++ V + E    L +S R+ L      +    I R  +  DGT K + ++    L+ETV IP +D K   R T CVSSQVGC L CSFC+TGK GF R+L++ EI+GQ+                     ++++ VTNVV MGMGEP+LN + V+ +   +  D   G  +R +T+ST GV   + +LA  +L   LAISLHAPN +LR  +VP  K YPLE
Sbjct:   35 LLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLSANACVIPPKVIHRQYSD-DGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCVSSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMTDENDSLENVDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAQ-ELDVALAISLHAPNDELRNELVPINKKYPLE 285          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PSYA2 (Ribosomal RNA large subunit methyltransferase N OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38
Identity = 98/253 (38.74%), Postives = 142/253 (56.13%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI----------------EEIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLGM++ +L      +G++ +R  Q+   IY++ V + E    L +S R+ L      +    I R  +  DGT K + ++    L+ETV IP +D K   R T C+SSQVGC L CSFC+TGK GF R+L++ EI+GQ+                     ++++ VTNVV MGMGEP+LN + V+ +   +  D   G  +R +T+ST GV   + +LA  +L   LAISLHAPN +LR  +VP  K YPLE
Sbjct:   31 LLGMTQAQLADYFKSIGEKPFRSTQVIKWIYQQGVTDFEQMTNLSKSLRDKLSANACVIPPKVIHRQYSD-DGTRKWVFEVTGGSLVETVLIPADDSKLNGRKTLCISSQVGCALDCSFCSTGKQGFERDLTAAEILGQLWVANASYMSDENDSLENIDHSLWENNVTNVVMMGMGEPLLNYRPVVSSMELMLSDHAYGLSKRRVTLSTSGVVPKMYELAK-ELDVALAISLHAPNDELRNELVPINKKYPLE 281          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PELLD (Ribosomal RNA large subunit methyltransferase N OS=Pelodictyon luteolum (strain DSM 273) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38
Identity = 99/248 (39.92%), Postives = 143/248 (57.66%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTA----ADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNK---DVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP-SAKSYPLE 869
            +L +   EL++    + +  +R  QLH  ++  +    ++   L    R  L E+ +    +      T     A  T KLLI+L D   +ETV IP     GP R+TACVS+Q GC L CSFCATG+ GF RNLSS EI GQV A+ ++ + R     ++N+VFMGMGEP+LN  +V+EA   L+         QR ITISTVG+   I +LA   L++ LA+SLH+  Q+ RE+++P +A+ YPL+
Sbjct:    8 ILNLRMDELKEALAAINEPQWRAAQLHQWLFSHRAGSFDDMTTLSLPLRRKLAESFYIQQPVTEKHDETMEGSPAGATEKLLIQLPDGERVETVLIP-----GPNRMTACVSAQAGCLLGCSFCATGQMGFRRNLSSGEITGQVWALSDMLQERNREASISNIVFMGMGEPLLNTANVIEAVLNLSTRKYRFSTSQRKITISTVGITPEIDRLADTGLKTKLAVSLHSAIQEKREALMPQAARQYPLD 250          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_DESVM (Ribosomal RNA large subunit methyltransferase N OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38
Identity = 97/245 (39.59%), Postives = 148/245 (60.41%), Query Frame = 3
Query:  165 LLGMSEQELQK-LAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTV-TAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVL-AIEEIFKHR-----VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQI--GQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +L ++  EL+  +   LG+  +R +Q+   ++++  +  +    + ++ R  L EA       P  RTV T++DGTVK L+ L D  L+ETV IP E  +G +R+T C+S QVGC + C+FC+TG  GF RN++  EI+GQVL A E +   R     V N+VFMGMGEP+LNL  V+ + R LN +  +    R IT+ST G+   +++L    L + LA+SLHAPNQ++R  I+P A  + L+
Sbjct:    4 ILNLTYDELEAWMTGTLGEPRFRARQVWQWLWQKNARSFDAMTNVSKATRARLAEAARITW--PEVRTVKTSSDGTVKFLLALADGALVETVLIPSESREGKVRMTQCLSCQVGCAMGCTFCSTGSMGFERNMTMAEILGQVLVAREHLGDDRPDHPIVRNLVFMGMGEPLLNLNEVMRSLRTLNDEFGLCFSPRRITVSTCGIEKGLRELGESGL-AFLAVSLHAPNQEVRARIMPRAARWTLD 245          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_DESHD (Ribosomal RNA large subunit methyltransferase N OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.780e-38
Identity = 95/239 (39.75%), Postives = 138/239 (57.74%), Query Frame = 3
Query:  174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +++ EL +   +LG   +RG+Q+   + ++ V+  E    +    R  LQE G  +  L   R   A DGT K L +  D   +E V +  +  K   R T CVS+Q+GC + C+FCATG GG+ RNLS  EI+GQVL I  + +      +VTN+VFMGMGEP+LN ++VL+A   LN  +   IG R +TIST GV   I++LA    Q  LA+SLH+ +   R+ ++P  + YPLE
Sbjct:   12 LNQSELTQHCAELGLPKFRGRQVFQWVQQKAVQNWEELRNIGAGDRQKLQE-GLFLQPLRKVREQIAQDGTRKFLFRCADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLE 249          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_GEMAT (Ribosomal RNA large subunit methyltransferase N OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38
Identity = 95/221 (42.99%), Postives = 130/221 (58.82%), Query Frame = 3
Query:  213 GQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHRV-TNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPL 866
            G+ +YR  Q+   +++R V+  +   +LP++ R  L    + +  L +     + DGT K L ++ D +LIETV IP  D     RLT C+SSQ GC L+C+FCATG  GF RNL   EI GQV  +  +    V TN+VFMGMGEP++N K+V      LN  + + IG R ITISTVGV   I  LA+   Q  LAIS+HAP+  LR +++P    YPL
Sbjct:   27 GEPAYRAAQVFGRLWQRPVRSFDEMTELPKALREGLA-GSFRITALELTTRQKSMDGTEKFLFRMHDGQLIETVAIPDGD-----RLTFCISSQAGCALQCAFCATGAMGFQRNLHPSEIAGQVRELRMLTPSIVPTNIVFMGMGEPLMNWKAVSPTLSLLNDPRALGIGARHITISTVGVLPGIVALAARPEQFRLAISIHAPSDALRRTLMPVNTKYPL 241          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHRSD (Ribosomal RNA large subunit methyltransferase N OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38
Identity = 97/241 (40.25%), Postives = 139/241 (57.68%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR-------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSY 860
            LLG++ +E++   V LG++ +R  Q+   I+     +  +   L ++ R  L+E     G   ++   T+ DGT K ++++ED   +ETV IP E   G  R T CVSSQVGC L CSFC+TGK GF RNL+S EI+GQV      F  R       VTNVV MGMGEP+LN  +V+ A + +  D   G  +R +T+ST GV   + +L   +L  +LA+SLHA N +LR  +VP  + Y
Sbjct:   12 LLGLTREEMESFFVSLGEKKFRAAQVMKWIHHEGCADFASMTNLSKALRTRLEELAEIRGPRVVYEG-TSQDGTRKWVLEVEDGSYVETVLIPAE---GGKRRTLCVSSQVGCSLDCSFCSTGKQGFQRNLTSAEIIGQVWVASNSFGARRDTTNRPVTNVVMMGMGEPLLNYDNVVPAMKLMLDDNGYGLSKRRVTLSTSGVVPKLDQLGD-ELDVSLAVSLHAANDELRNELVPLNRKY 247          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CAMHC (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.325e-38
Identity = 102/245 (41.63%), Postives = 144/245 (58.78%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE----KGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFK---HRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSY 860
            LL  S  EL +L     +  +R KQ++  IY + V +      LP   R DL    + +G L + +   + DG+ K L +L+D + IE+V +P++DE     G +    R T CVSSQVGC + C+FC T KGGF RNLS+ EIV Q+  I++I K    R  NVV+MGMGEP+ NL++V +A + L  N+ + I  R  TIST G+ + IKKL    L   LAISLHA N +LRE ++P  ++Y
Sbjct:    4 LLDFSLDELGELL----KPKFRAKQIYEWIYHKNVDDFLQMKNLPLQMREDLANEFY-IGGLNVSKCEQSVDGSKKYLFELKDGKTIESVLLPMKDEITDENGEILRHKRYTICVSSQVGCKIGCAFCLTAKGGFVRNLSAGEIVEQIRLIKKINKIPYERRINVVYMGMGEPLNNLENVAKAIKILIQNEGLAISPRRQTISTSGLSSQIKKLGEMNLGVLLAISLHAVNDELREKLMPINRAY 243          
The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_THICR1.363e-3840.98Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_SACD21.363e-3837.69Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PSYCK1.363e-3839.13Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PSYA21.780e-3838.74Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PELLD1.780e-3839.92Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_DESVM1.780e-3839.59Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_DESHD1.780e-3839.75Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_GEMAT2.325e-3842.99Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CHRSD2.325e-3840.25Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CAMHC2.325e-3841.63Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTAGGT
TGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAAG
AAATCTTTCAAGCCATGAAATTGTTGGGCAGGTGTTAGCAATTGAAGAGA
TCTTCAAGCATAGGGTGACAAACGTAGTGTTCATGGGAATGGGCGAGCCA
ATGTTGAACCTAAAGTCTGTGCTTGAAGCACATCGATGTTTGAATAAGGA
TGTGCAAATTGGACAAAGGATGATTACAATTTCCACTGTGGGGGTTCCGA
ACACAATTAAAAAGTTGGCCTCTTACAAACTTCAGTCAACATTGGCTATC
AGCTTACATGCTCCAAACCAGAAACTGAGGGAATCAATTGTGCCAAGTGC
AAAGTCCTATCCTCTTGAA
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