FC878207
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CAMC1 (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter concisus (strain 13826) GN=rlmN PE=3 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 3.036e-38 Identity = 100/248 (40.32%), Postives = 146/248 (58.87%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIP----VEDEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHR--CLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LL +S +EL++L S+R Q++ +YK+ E + LP+ R DL E + + L + ++DG++K L +L+D IE+V +P + DE G + R T CVSSQVGC + C+FC T KGG RNL++ EIVGQ+L I+ +I R NVV+MGMGEP+ NL +V +A + LN+ + I R T+ST G+ + IKKL L LAISLHA +LR ++P K+Y +E Sbjct: 4 LLDLSIEELKELV----SPSFRATQIYEWVYKKNATEFSQMLNLPKDMRQDLAEKFY-LDPLKCVKFEQSSDGSIKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTICVSSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKRENKIPYERRINVVYMGMGEPLDNLTNVSKAIKILALNEGLAISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPINKAYNIE 246
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROA2 (Ribosomal RNA large subunit methyltransferase N OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rlmN PE=3 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 3.966e-38 Identity = 95/242 (39.26%), Postives = 139/242 (57.44%), Query Frame = 3 Query: 177 SEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGW----TVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD---VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 S +EL++L +G+ +R QLH +Y + + + +S R L + ++ +A T K L++L D +ETV IP E R T CVS+QVGCPL CSFCATG GF+RNL++ EI QV +++ I VTN+V+MGMGEP+L L+ V+E+ L+ + I Q+ IT+STVG+ I LA L + LAISLH+ +Q+ R S++PSA+ YPL+ Sbjct: 11 SRKELEELMQSIGEPRFRAAQLHRWLYSDRASDFHEMTTISKSLRETLDRKYFLPQCSMSSTQCVEDSSADSTTRKFLVQLHDQEAVETVLIPAEG-----RNTVCVSTQVGCPLHCSFCATGYMGFTRNLNAAEIAEQVFLVQDYLDAIGCGAVTNIVYMGMGEPLLALEEVIESVGILSDTTYRLHISQKKITLSTVGLLPEIGMLARSGLTTNLAISLHSADQETRASLMPSARDYPLK 247
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_COLP3 (Ribosomal RNA large subunit methyltransferase N OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rlmN PE=3 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 5.179e-38 Identity = 95/244 (38.93%), Postives = 137/244 (56.15%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI-EEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LL + +++ +G++ +R Q+ IY + E + + R LQ + I + DGT+K +KLE + +ETV IP D R T CVSSQVGC L C+FCAT + GF+RNLS EI+GQV + +I R +TN+V MGMGEP+LN+K+++ A + D+ G +R +T+ST GV + L + K+ LAIS+HAPN KLR+ +VP K YPLE Sbjct: 10 LLNFDHKSMREYLESIGEKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQR-NCIISAPDISEKQVSEDGTIKYALKLEGGQEVETVWIPEND-----RATLCVSSQVGCALECTFCATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKA-KIDCALAISIHAPNNKLRDELVPINKKYPLE 246
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_HAHCH (Ribosomal RNA large subunit methyltransferase N OS=Hahella chejuensis (strain KCTC 2396) GN=rlmN PE=3 SV=1) HSP 1 Score: 157.918 bits (398), Expect = 6.765e-38 Identity = 99/244 (40.57%), Postives = 139/244 (56.97%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLGM+ +L+ LG++ +R QL +Y V + + + ++ R L+E I+ ++A DGT K +++L IETV IP + G R T CVSSQ+GC L CSFC+TGK GF+RNLSS EI+GQ+ F + VTN+VFMGMGEP+LN +V+ A + D G +R +T+ST G+ + KL +LAISLHAPN LR+ +VP K YP+E Sbjct: 10 LLGMNRSDLETFFESLGEKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLKEVAEVSVPEVIYEDISA-DGTRKWVMRLAGGNSIETVYIP---DNG--RGTLCVSSQIGCSLDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKERYVTNIVFMGMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDV-TDVSLAISLHAPNNSLRDVLVPVNKKYPIE 246
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_DESHY (Ribosomal RNA large subunit methyltransferase N OS=Desulfitobacterium hafniense (strain Y51) GN=rlmN PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.835e-38 Identity = 93/239 (38.91%), Postives = 138/239 (57.74%), Query Frame = 3 Query: 174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 +++ EL + +LG +RG+Q+ + ++ V+ E + R LQ+ G + L R + DGT K L + D +E V + + K R T CVS+Q+GC + C+FCATG GG+ RNLS EI+GQVL I + + +VTN+VFMGMGEP+LN ++VL+A LN + IG R +TIST GV I++LA Q LA+SLH+ + R+ ++P + YPLE Sbjct: 12 LNQSELTQHCAELGLPKFRGRQVFQWVQQKAVQNWEELKNIGAGDRQKLQD-GLFLQPLRKVREQISQDGTRKFLFRCADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLE 249
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CAMFF (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rlmN PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.835e-38 Identity = 99/245 (40.41%), Postives = 140/245 (57.14%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE--------KGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSY 860 LL +S+ EL L +R KQ++ +YK+ + + + + R +L+ + + L R+ T+ DG++K L KL D + IE+V +P+++E + R T CVSSQVGC + CSFC T KGGF RNLS+ EIV Q+L I+ I R NVV+MGMGEP+ NL +V +A L N + IG R TIST G+ + IKKL L LAISLHA +LR ++P K+Y Sbjct: 4 LLDLSQDELANLL----SPKFRAKQIYEWVYKKNARSFDEMTNISKDVRENLKSEFY-LDPLTCVRSETSKDGSIKYLFKLTDGKTIESVLLPMKEEISSEDGSVERHARYTICVSSQVGCKMGCSFCLTAKGGFVRNLSAGEIVAQILWIKRENNIPYERRVNVVYMGMGEPLDNLTNVSKAVSILKDNDGLAIGARRQTISTSGLASQIKKLGELDLGVLLAISLHAVTDELRAKLMPINKAY 243
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ALCBS (Ribosomal RNA large subunit methyltransferase N OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rlmN PE=3 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 8.835e-38 Identity = 93/244 (38.11%), Postives = 143/244 (58.61%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LLG+S ++++ + +G++ +R +Q+ I+ + E + ++ R L E G +++ DGT K + ++++ +ETV IP + +G T CVSSQVGC + CSFC+TGK GF R+++S EI+GQV F +H +TNVV MGMGEP+LN VL A R + D+ IG++ IT+ST GV + +L S L +LA+SLHAPN +LR +VP + YPL+ Sbjct: 9 LLGLSRPQMEEFFLTMGEKKFRAQQVLKWIHHHQADSFEQMTDVGKALRQKLSEVAEIRGPKVTHESISR-DGTRKWVFEMDNGGAVETVFIP-DGRRG----TLCVSSQVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQL-SEDLDVSLAVSLHAPNDELRNQLVPLNRKYPLK 245
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_LAWIP (Ribosomal RNA large subunit methyltransferase N OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rlmN PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.154e-37 Identity = 97/244 (39.75%), Postives = 145/244 (59.43%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVD-LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE------EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 LL ++ E + L V L +++YR Q+ ++++++ +IE+ LPQ R L A + I ++DGT K L++L D LIETV IP D+ G +R+T C+SSQVGC + C+FC+T GF RNL++ EIV QVL + + K + N+VFMGMGEP+LNL + A L+ K + R IT+ST G+ I+ L+ L + LA+SLHA NQ+LR +I+P A + L+ Sbjct: 4 LLNITYPEFESLIVTTLQEKTYRAMQIWQWVWQKQITDIESMTNLPQKIRASLT-ALIKINLPEIVTIQQSSDGTKKFLLRLSDGALIETVLIPSIDKAGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPIIRNIVFMGMGEPLLNLTELTRALHILHSEKGLNFSARRITVSTCGIKKGIQALSENGL-AFLALSLHASNQELRSTIMPKAAKWDLK 245
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHLCH (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium chlorochromatii (strain CaD3) GN=rlmN PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.154e-37 Identity = 95/246 (38.62%), Postives = 141/246 (57.32%), Query Frame = 3 Query: 165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-----TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCL---NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP-SAKSYPL 866 L+ + EL G+ +R KQ+H ++ LP R L E +T+ R + + + T K+L+KL D LIE V IP E+ R+TAC+SSQ GCP++C+FCATG G RNLS+ EI Q+ A+ + +TNVVFMGMGEP+LN +VLEA + N ++ + QR ITISTVG+ I++L+ L++ LA+SLH+ Q++R+ ++P +A+ YPL Sbjct: 16 LVDLRYNELHNAITAFGEPPFRAKQIHEWLFSHHANSFAAMSSLPLRLREKLAER-FTLQRPEVVEVQESCESGCLRPTRKILLKLSDGALIECVLIPAEE-----RMTACLSSQAGCPMQCTFCATGTMGLQRNLSAGEIWEQLYALNGLALQEGKTITNVVFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKLAVSLHSARQEVRQQLMPIAAERYPL 255
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ACIAD (Ribosomal RNA large subunit methyltransferase N OS=Acinetobacter sp. (strain ADP1) GN=rlmN PE=3 SV=1) HSP 1 Score: 157.147 bits (396), Expect = 1.154e-37 Identity = 106/282 (37.59%), Postives = 151/282 (53.55%), Query Frame = 3 Query: 81 SCLAVSVTPRRKLSVSSSSRAPRVDANVL------LGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNR--LIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869 S + +SV P S S+ V+ VL LGMS EL++ +G++ +R Q+ I++ V ++ + R L++ + + + DGT K + ++ + L+ETV IP ED+ G R T C+SSQVGC L CSFC+TGK GF R+L+ EI+GQ+ + + VTNVV MGMGEP+LN K V+ + + D G +R +T+ST GV I KLA +L LAISLHAPN LR+ +VP K YPLE Sbjct: 3 SAVGISV-PNTDAQSSQSASQTTVEQEVLKSKVNLLGMSRIELEQFFEQIGEKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKLEQV-CEIKAPEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGS-RKTLCISSQVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQSYVEDVPVAERTRAVTNVVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAE-ELDVALAISLHAPNNPLRDELVPINKKYPLE 280 The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bpback to top |