FC878207

Overview
NameFC878207
Unique NameFC878207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length869
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CAMC1 (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter concisus (strain 13826) GN=rlmN PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.036e-38
Identity = 100/248 (40.32%), Postives = 146/248 (58.87%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIP----VEDEKGPM----RLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHR--CLNKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LL +S +EL++L       S+R  Q++  +YK+   E    + LP+  R DL E  + +  L   +   ++DG++K L +L+D   IE+V +P    + DE G +    R T CVSSQVGC + C+FC T KGG  RNL++ EIVGQ+L I+   +I   R  NVV+MGMGEP+ NL +V +A +   LN+ + I  R  T+ST G+ + IKKL    L   LAISLHA   +LR  ++P  K+Y +E
Sbjct:    4 LLDLSIEELKELV----SPSFRATQIYEWVYKKNATEFSQMLNLPKDMRQDLAEKFY-LDPLKCVKFEQSSDGSIKYLFELKDGLKIESVLLPMKEEISDEDGKISRHARYTICVSSQVGCKMGCAFCLTAKGGLVRNLTAGEIVGQILWIKRENKIPYERRINVVYMGMGEPLDNLTNVSKAIKILALNEGLAISPRRQTVSTSGLGSQIKKLGEMDLGVLLAISLHAVTNELRSRLMPINKAYNIE 246          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_PROA2 (Ribosomal RNA large subunit methyltransferase N OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rlmN PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.966e-38
Identity = 95/242 (39.26%), Postives = 139/242 (57.44%), Query Frame = 3
Query:  177 SEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGW----TVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEE----IFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKD---VQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            S +EL++L   +G+  +R  QLH  +Y  +  +      + +S R  L    +    ++         +A   T K L++L D   +ETV IP E      R T CVS+QVGCPL CSFCATG  GF+RNL++ EI  QV  +++    I    VTN+V+MGMGEP+L L+ V+E+   L+     + I Q+ IT+STVG+   I  LA   L + LAISLH+ +Q+ R S++PSA+ YPL+
Sbjct:   11 SRKELEELMQSIGEPRFRAAQLHRWLYSDRASDFHEMTTISKSLRETLDRKYFLPQCSMSSTQCVEDSSADSTTRKFLVQLHDQEAVETVLIPAEG-----RNTVCVSTQVGCPLHCSFCATGYMGFTRNLNAAEIAEQVFLVQDYLDAIGCGAVTNIVYMGMGEPLLALEEVIESVGILSDTTYRLHISQKKITLSTVGLLPEIGMLARSGLTTNLAISLHSADQETRASLMPSARDYPLK 247          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_COLP3 (Ribosomal RNA large subunit methyltransferase N OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=rlmN PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 5.179e-38
Identity = 95/244 (38.93%), Postives = 137/244 (56.15%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAI-EEIFKHR------VTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LL    + +++    +G++ +R  Q+   IY     + E    + +  R  LQ     +    I     + DGT+K  +KLE  + +ETV IP  D     R T CVSSQVGC L C+FCAT + GF+RNLS  EI+GQV  +  +I   R      +TN+V MGMGEP+LN+K+++ A   +  D+  G  +R +T+ST GV   +  L + K+   LAIS+HAPN KLR+ +VP  K YPLE
Sbjct:   10 LLNFDHKSMREYLESIGEKPFRADQIMKWIYHFGYSDFEQMTNINKKLREKLQR-NCIISAPDISEKQVSEDGTIKYALKLEGGQEVETVWIPEND-----RATLCVSSQVGCALECTFCATAQQGFNRNLSMAEIIGQVWRVANDIGATRIAGTRPITNIVMMGMGEPLLNMKNLIPALDTMLNDLGYGLSKRRVTVSTSGVVPALDMLKA-KIDCALAISIHAPNNKLRDELVPINKKYPLE 246          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_HAHCH (Ribosomal RNA large subunit methyltransferase N OS=Hahella chejuensis (strain KCTC 2396) GN=rlmN PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 6.765e-38
Identity = 99/244 (40.57%), Postives = 139/244 (56.97%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLGM+  +L+     LG++ +R  QL   +Y   V + +    + ++ R  L+E         I+  ++A DGT K +++L     IETV IP   + G  R T CVSSQ+GC L CSFC+TGK GF+RNLSS EI+GQ+      F       +  VTN+VFMGMGEP+LN  +V+ A   +  D   G  +R +T+ST G+   + KL       +LAISLHAPN  LR+ +VP  K YP+E
Sbjct:   10 LLGMNRSDLETFFESLGEKKFRATQLMKWMYHLGVSDFDLMTNMSKALREKLKEVAEVSVPEVIYEDISA-DGTRKWVMRLAGGNSIETVYIP---DNG--RGTLCVSSQIGCSLDCSFCSTGKQGFNRNLSSAEIIGQLWIAARSFGDYDLSKERYVTNIVFMGMGEPLLNFDNVVRACDVMMDDFGFGISKRRLTVSTSGLVPALDKLGDV-TDVSLAISLHAPNNSLRDVLVPVNKKYPIE 246          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_DESHY (Ribosomal RNA large subunit methyltransferase N OS=Desulfitobacterium hafniense (strain Y51) GN=rlmN PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.835e-38
Identity = 93/239 (38.91%), Postives = 138/239 (57.74%), Query Frame = 3
Query:  174 MSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKH-----RVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            +++ EL +   +LG   +RG+Q+   + ++ V+  E    +    R  LQ+ G  +  L   R   + DGT K L +  D   +E V +  +  K   R T CVS+Q+GC + C+FCATG GG+ RNLS  EI+GQVL I  + +      +VTN+VFMGMGEP+LN ++VL+A   LN  +   IG R +TIST GV   I++LA    Q  LA+SLH+ +   R+ ++P  + YPLE
Sbjct:   12 LNQSELTQHCAELGLPKFRGRQVFQWVQQKAVQNWEELKNIGAGDRQKLQD-GLFLQPLRKVREQISQDGTRKFLFRCADGETLECVLMDYDRRKNRDRHTVCVSTQIGCAVGCAFCATGLGGWRRNLSPGEILGQVLDITYLMRQEDPDFQVTNIVFMGMGEPLLNYEAVLKAIELLNDPEGQGIGMRRMTISTSGVAPKIRQLAKDNPQVGLAVSLHSAHNTTRDQLIPMNRKYPLE 249          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CAMFF (Ribosomal RNA large subunit methyltransferase N OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rlmN PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.835e-38
Identity = 99/245 (40.41%), Postives = 140/245 (57.14%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDE--------KGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE---EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCL--NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSY 860
            LL +S+ EL  L        +R KQ++  +YK+  +  +    + +  R +L+   + +  L   R+ T+ DG++K L KL D + IE+V +P+++E        +   R T CVSSQVGC + CSFC T KGGF RNLS+ EIV Q+L I+    I   R  NVV+MGMGEP+ NL +V +A   L  N  + IG R  TIST G+ + IKKL    L   LAISLHA   +LR  ++P  K+Y
Sbjct:    4 LLDLSQDELANLL----SPKFRAKQIYEWVYKKNARSFDEMTNISKDVRENLKSEFY-LDPLTCVRSETSKDGSIKYLFKLTDGKTIESVLLPMKEEISSEDGSVERHARYTICVSSQVGCKMGCSFCLTAKGGFVRNLSAGEIVAQILWIKRENNIPYERRVNVVYMGMGEPLDNLTNVSKAVSILKDNDGLAIGARRQTISTSGLASQIKKLGELDLGVLLAISLHAVTDELRAKLMPINKAY 243          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ALCBS (Ribosomal RNA large subunit methyltransferase N OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rlmN PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.835e-38
Identity = 93/244 (38.11%), Postives = 143/244 (58.61%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF-------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDV--QIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LLG+S  ++++  + +G++ +R +Q+   I+  +    E    + ++ R  L E     G      +++  DGT K + ++++   +ETV IP +  +G    T CVSSQVGC + CSFC+TGK GF R+++S EI+GQV      F       +H +TNVV MGMGEP+LN   VL A R +  D+   IG++ IT+ST GV   + +L S  L  +LA+SLHAPN +LR  +VP  + YPL+
Sbjct:    9 LLGLSRPQMEEFFLTMGEKKFRAQQVLKWIHHHQADSFEQMTDVGKALRQKLSEVAEIRGPKVTHESISR-DGTRKWVFEMDNGGAVETVFIP-DGRRG----TLCVSSQVGCAVDCSFCSTGKQGFQRDMTSAEIIGQVWQASRAFGPRRNLGQHPITNVVMMGMGEPLLNYDKVLTAMRIMKDDLGYGIGKKRITVSTSGVIPKMNQL-SEDLDVSLAVSLHAPNDELRNQLVPLNRKYPLK 245          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_LAWIP (Ribosomal RNA large subunit methyltransferase N OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rlmN PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.154e-37
Identity = 97/244 (39.75%), Postives = 145/244 (59.43%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVD-LGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIE------EIFKHRVTNVVFMGMGEPMLNLKSVLEAHRCLN--KDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            LL ++  E + L V  L +++YR  Q+   ++++++ +IE+   LPQ  R  L  A   +    I     ++DGT K L++L D  LIETV IP  D+ G +R+T C+SSQVGC + C+FC+T   GF RNL++ EIV QVL  +      +  K  + N+VFMGMGEP+LNL  +  A   L+  K +    R IT+ST G+   I+ L+   L + LA+SLHA NQ+LR +I+P A  + L+
Sbjct:    4 LLNITYPEFESLIVTTLQEKTYRAMQIWQWVWQKQITDIESMTNLPQKIRASLT-ALIKINLPEIVTIQQSSDGTKKFLLRLSDGALIETVLIPSIDKAGNIRITQCLSSQVGCSMGCTFCSTATMGFIRNLTAGEIVSQVLLAKLHLNDNKPDKPIIRNIVFMGMGEPLLNLTELTRALHILHSEKGLNFSARRITVSTCGIKKGIQALSENGL-AFLALSLHASNQELRSTIMPKAAKWDLK 245          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_CHLCH (Ribosomal RNA large subunit methyltransferase N OS=Chlorobium chlorochromatii (strain CaD3) GN=rlmN PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.154e-37
Identity = 95/246 (38.62%), Postives = 141/246 (57.32%), Query Frame = 3
Query:  165 LLGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADG-----TVKLLIKLEDNRLIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIFKHR---VTNVVFMGMGEPMLNLKSVLEAHRCL---NKDVQIGQRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVP-SAKSYPL 866
            L+ +   EL       G+  +R KQ+H  ++            LP   R  L E  +T+ R  +     + +      T K+L+KL D  LIE V IP E+     R+TAC+SSQ GCP++C+FCATG  G  RNLS+ EI  Q+ A+  +       +TNVVFMGMGEP+LN  +VLEA   +   N ++ + QR ITISTVG+   I++L+   L++ LA+SLH+  Q++R+ ++P +A+ YPL
Sbjct:   16 LVDLRYNELHNAITAFGEPPFRAKQIHEWLFSHHANSFAAMSSLPLRLREKLAER-FTLQRPEVVEVQESCESGCLRPTRKILLKLSDGALIECVLIPAEE-----RMTACLSSQAGCPMQCTFCATGTMGLQRNLSAGEIWEQLYALNGLALQEGKTITNVVFMGMGEPLLNTDNVLEAIATMSSRNYNLSLSQRKITISTVGIVPEIERLSRSGLKTKLAVSLHSARQEVRQQLMPIAAERYPL 255          
BLAST of FC878207 vs. ExPASy Swiss-Prot
Match: RLMN_ACIAD (Ribosomal RNA large subunit methyltransferase N OS=Acinetobacter sp. (strain ADP1) GN=rlmN PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.154e-37
Identity = 106/282 (37.59%), Postives = 151/282 (53.55%), Query Frame = 3
Query:   81 SCLAVSVTPRRKLSVSSSSRAPRVDANVL------LGMSEQELQKLAVDLGQQSYRGKQLHHLIYKRKVKEIENFIQLPQSFRNDLQEAGWTVGRLPIFRTVTAADGTVKLLIKLEDNR--LIETVGIPVEDEKGPMRLTACVSSQVGCPLRCSFCATGKGGFSRNLSSHEIVGQVLAIEEIF---------KHRVTNVVFMGMGEPMLNLKSVLEAHRCLNKDVQIG--QRMITISTVGVPNTIKKLASYKLQSTLAISLHAPNQKLRESIVPSAKSYPLE 869
            S + +SV P      S S+    V+  VL      LGMS  EL++    +G++ +R  Q+   I++  V ++     +    R  L++    +    +     + DGT K + ++ +    L+ETV IP ED+ G  R T C+SSQVGC L CSFC+TGK GF R+L+  EI+GQ+    + +            VTNVV MGMGEP+LN K V+ +   +  D   G  +R +T+ST GV   I KLA  +L   LAISLHAPN  LR+ +VP  K YPLE
Sbjct:    3 SAVGISV-PNTDAQSSQSASQTTVEQEVLKSKVNLLGMSRIELEQFFEQIGEKKFRAGQIMKWIHQYFVTDLAEMTNISGKLRTKLEQV-CEIKAPEVVHRHYSKDGTRKWVFRVGEGSGSLVETVLIPAEDKTGS-RKTLCISSQVGCALDCSFCSTGKQGFQRDLTPAEIIGQLWVANQSYVEDVPVAERTRAVTNVVMMGMGEPLLNFKPVVHSMSIMLDDYAYGMSKRRVTLSTSGVVPMIDKLAE-ELDVALAISLHAPNNPLRDELVPINKKYPLE 280          
The following BLAST results are available for this feature:
BLAST of FC878207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RLMN_CAMC13.036e-3840.32Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_PROA23.966e-3839.26Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_COLP35.179e-3838.93Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_HAHCH6.765e-3840.57Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_DESHY8.835e-3838.91Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CAMFF8.835e-3840.41Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ALCBS8.835e-3838.11Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_LAWIP1.154e-3739.75Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_CHLCH1.154e-3738.62Ribosomal RNA large subunit methyltransferase N OS... [more]
RLMN_ACIAD1.154e-3737.59Ribosomal RNA large subunit methyltransferase N OS... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878207 ID=FC878207; Name=FC878207; organism=Citrus clementina; type=EST; length=869bp
AAAGGATAATTGCCGTTTCAATGACTCTGCTTCGGCAAGTGATCTCTGCT
CCCGTAGCACATGCGGTGGTGCTTTCTCGCTCCTGCCTTGCAGTTTCTGT
GACCCCGCGGCGCAAGTTATCTGTTTCTTCTTCTTCACGTGCCCCTCGCG
TGGACGCCAACGTGCTCCTTGGCATGTCCGAGCAGGAGCTTCAAAAACTC
GCCGTCGACCTCGGCCAGCAAAGTTACAGAGGGAAGCAGCTTCATCATCT
AATTTACAAAAGAAAGGTCAAAGAAATTGAAAATTTTATTCAACTGCCTC
AGTCCTTCAGAAATGATCTCCAAGAAGCTGGATGGACGGTTGGTCGCTTG
CCGATTTTTCGCACGGTCACTGCAGCTGATGGAACTGTTAAATTGCTAAT
AAAGCTGGAAGACAACAGATTGATTGAAACTGTTGGCATACCAGTTGAAG
ACGAGAAAGGTCCCATGCGTCTTACCGCTTGTGTGTCATCGCAGGTAGGT
TGCCCATTGCGTTGTTCGTTTTGTGCCACTGGAAAGGGAGGATTTTCAAG
AAATCTTTCAAGCCATGAAATTGTTGGGCAGGTGTTAGCAATTGAAGAGA
TCTTCAAGCATAGGGTGACAAACGTAGTGTTCATGGGAATGGGCGAGCCA
ATGTTGAACCTAAAGTCTGTGCTTGAAGCACATCGATGTTTGAATAAGGA
TGTGCAAATTGGACAAAGGATGATTACAATTTCCACTGTGGGGGTTCCGA
ACACAATTAAAAAGTTGGCCTCTTACAAACTTCAGTCAACATTGGCTATC
AGCTTACATGCTCCAAACCAGAAACTGAGGGAATCAATTGTGCCAAGTGC
AAAGTCCTATCCTCTTGAA
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