FC878214

Overview
NameFC878214
Unique NameFC878214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10680 contig Ccv1_Contig10680:125..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER4_VITVI (Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 4.415e-53
Identity = 110/259 (42.47%), Postives = 166/259 (64.09%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFA---TVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPT---SDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSF 868
            LS  FY ++CPK+   V+  +Q+A+ K+  + A L+R+ FHDCFV GCD SVLL+ ++S   EQ A PN +  +  L  +D ++++V   C  VVSCADI+A+AARDSV + GGP++D+ LGRRDSKT +      N+P P S+ + +++ F+ +  + R+ VALSG HT+G A C +F  R+Y   +  +D +FA   + +CP+   S  NN    D+++P  FDN YY +L+N++GLL SDQ LY    T S V ++
Sbjct:   27 LSTNFYSKTCPKVFDTVKSGVQSAVSKERRMGASLLRLFFHDCFVNGCDASVLLDDTSSFTGEQTAVPNKNSIR-GLNVIDNIKSQVESVCPGVVSCADIIAIAARDSVVILGGPDWDVKLGRRDSKTASLSGANNNIPPPTSSLSNLISKFQAQGLSTRDMVALSGAHTIGQARCTSFRARIY--NETNIDSSFAKTRQASCPSASGSGDNNLAPLDLQTPTTFDNYYYKNLINQKGLLHSDQVLYNGGSTDSTVKTY 282          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER3_ARATH (Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 9.835e-53
Identity = 113/262 (43.13%), Postives = 159/262 (60.69%), Query Frame = 2
Query:  104 PVAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGST--SEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRD---SKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLK-KTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRS 853
            P+   L   FY  SCP  E IV+  + N +     LAA LIR+HFHDCFV+GCDGSVL+  ++  +E++A PNL++R     F+D +++ +  +C  +VSCADI+ALA+RD+V  +GGPN+ +P GRRD   S     + N+P P SN T +   F  +  + ++ V LSG HT+G++HC +FTNRLY       QDP LD  +A NLK + CP+ + N T V  D  S   FD  YY  ++ R+GL  SD  L T+  T S
Sbjct:   21 PIQAQLQMNFYANSCPNAEKIVQDFVSNHVSNAPSLAAALIRMHFHDCFVRGCDGSVLINSTSGNAERDATPNLTVR--GFGFIDAIKSVLEAQCPGIVSCADIIALASRDAVVFTGGPNWSVPTGRRDGRISNAAEALANIPPPTSNITNLQTLFANQGLDLKDLVLLSGAHTIGVSHCSSFTNRLYNFTGRGGQDPALDSEYAANLKSRKCPSLNDNKTIVEMDPGSRKTFDLSYYQLVLKRRGLFQSDSALTTNPTTLS 280          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER49_ARATH (Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 1.285e-52
Identity = 109/260 (41.92%), Postives = 168/260 (64.62%), Query Frame = 2
Query:  131 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFA---TVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQ-----DPTLDKTFANNLKKTCPTSDSNN-TTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLY-TDKRTRSIVTSFA 871
            +Y  SCP++  IVR  +  A+ ++  +AA L+R+HFHDCFVQGCDGS+LL+ S    +E+N+ PN S        VD+++A + K+C   VSCAD+L LAARDS  L+GGP++ +PLGRRDS++ +   +  N+P+P +    IL+ F  +  +  + VALSG HT+G + C +F  RLY +      D TL+++FA NL++ CP S  +   +V DI S   FDN Y+ +L+  +GLL SDQ L+ +++++R +V  +A
Sbjct:   34 YYAHSCPQVNEIVRSVVAKAVARETRMAASLLRLHFHDCFVQGCDGSLLLDSSGRVATEKNSNPN-SKSARGFDVVDQIKAELEKQCPGTVSCADVLTLAARDSSVLTGGPSWVVPLGRRDSRSASLSQSNNNIPAPNNTFQTILSKFNRQGLDITDLVALSGSHTIGFSRCTSFRQRLYNQSGNGSPDMTLEQSFAANLRQRCPKSGGDQILSVLDIISAASFDNSYFKNLIENKGLLNSDQVLFSSNEKSRELVKKYA 292          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.678e-52
Identity = 110/251 (43.82%), Postives = 161/251 (64.14%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATVV--NLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYT 835
            LS +FYD++CP++  I    I+ AL+ D  +AA ++R+HFHDCFV GCD S+LL+ +TS +  +      + A  F  +D ++A V K C + VSCAD+LA+AA+ SV L+GGP++ +P GRRDS + F  +   NLP P S   V+ + FR    +   + VALSGGHT G   C    +RLY      K DPTLDK++ + L+K CP + + +  V FD+R+P +FDNKYYV+L   +GL+ SDQ+L++
Sbjct:   26 LSPSFYDKTCPQVFDIATNTIKTALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNARSARGFDVIDTMKAAVEKACPKTVSCADLLAIAAQKSVVLAGGPSWKVPSGRRDSLRGFMDLANDNLPGPSSTLQVLKDKFRNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNSGKPDPTLDKSYLSTLRKQCPRNGNLSVLVDFDLRTPTIFDNKYYVNLKENKGLIQSDQELFS 276          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 1.678e-52
Identity = 115/266 (43.23%), Postives = 163/266 (61.28%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKR---TRSIVTSFA 871
            L+ TFYD SCP + +IVR  I N L+ D  +AA ++R+HFHDCFV GCD S+LL+ +TS +  +        A  F  +D ++A V   C R VSCAD+L +AA+ SV L+GGP++ +PLGRRDS + F  +   NLP+PF     + + FR    N + + VALSGGHT G   C    +RLY        DPTL+ T+   L+  CP + + +  V FD+R+P +FDNKYYV+L  ++GL+ SDQ+L++      T  +V SFA
Sbjct:   32 LTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFA 297          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 2.191e-52
Identity = 112/254 (44.09%), Postives = 159/254 (62.60%), Query Frame = 2
Query:  110 AKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYT 835
            A  L+ TFYD+SCP + +IVR+ I N L+ D  +AA ++R+HFHDCFV GCD S+LL+ +TS +  +        A  F  +D ++A V + C R VSCAD+L +AA+ SV L+GGP++ +PLGRRDS + F  +   NLP+PF     +   FR    +   + VALSGGHT G   C    +RLY        DPTL+ T+   L+  CP + + +  V FD+R+P VFDNKYYV+L  R+GL+ SDQ+L++
Sbjct:   29 AAQLTPTFYDRSCPNVTNIVRETIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTLAGGPSWRVPLGRRDSLQAFLELANANLPAPFFTLPQLKASFRNVGLDRPSDLVALSGGHTFGKNQCQFILDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNRSALVDFDLRTPTVFDNKYYVNLKERKGLIQSDQELFS 282          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER59_ARATH (Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.737e-52
Identity = 116/263 (44.11%), Postives = 159/263 (60.46%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS--KTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPT-SDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTD----KRTRSIVTSFA 871
            LS   Y +SCP L  IVRKQ+  ALK +I +AA LIR+HFHDCFV GCD S+LL+G+ SE+ A PN++  +   + +D ++A V   C  VVSCADIL LAARDSV LSGGP + + LGR+D       +  NLPSPF     I+  F     N  + VALSG HT G A C  F+NRL+        D TL+ +  +NL+  CP   +SN T   D  + + FDN Y+ +L+  +GLL+SDQ L++       T+ +V +++
Sbjct:   30 LSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSEKLAIPNINSAR-GFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGLGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLLSSDQILFSSDLAVNTTKKLVEAYS 291          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER10_ARATH (Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=1 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.737e-52
Identity = 115/270 (42.59%), Postives = 162/270 (60.00%), Query Frame = 2
Query:  107 VAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF---ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFA--NNLKKTCPTSDSNNT--TVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            +   L++ FYD+SCP+L++IV+  +  A K D  +AA L+R+HFHDCFV GCDGS+LL  S     E+NA+PN +      + ++++++ +   C   VSCADI+ALAAR++V L+GGP + +PLGRRDS T    A   NLPSPF     I   F     + ++ V LSG HT+G A C    +RL+      + DP L  + A  + LK TCP  DS+++     D  S   FDN YYV+LMN  GLL SDQ L TD    ++V S++
Sbjct:   44 LTSNLNYRFYDRSCPRLQTIVKSGVWRAFKDDSRIAASLLRLHFHDCFVNGCDGSILLNDSEDFKGEKNAQPNRN-SVRGFEVIEDIKSDIESSCPLTVSCADIVALAAREAVVLTGGPFWPVPLGRRDSLTASEQAANTNLPSPFEALENITAKFVTLGLDLKDVVVLSGAHTIGFAQCFVIKHRLFNFKGSGQPDPNLAASSALLSKLKDTCPNVDSSDSKLAALDAASSVKFDNAYYVNLMNNIGLLDSDQTLMTDPTAAALVKSYS 312          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER37_ARATH (Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.881e-52
Identity = 109/251 (43.43%), Postives = 162/251 (64.54%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATVV--NLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYT 835
            LS +FYD++CP++  I    I NAL+ D  +AA ++R+HFHDCFV GCD S+LL+ +TS +  +        A  F  +D+++A V K C + VSCAD+LA+AA++SV L+GGP++ +P GRRDS + F  +   NLP+PF     + + F+    + A + VALSGGHT G   C    +RLY        DPTLDK++ + L+K CP + + +  V FD+R+P +FDNKYYV+L   +GL+ SDQ+L++
Sbjct:   24 LSPSFYDKTCPQVFDIATTTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFDVIDKMKAAVEKACPKTVSCADLLAIAAQESVVLAGGPSWRVPNGRRDSLRGFMDLANDNLPAPFFTLNQLKDRFKNVGLDRASDLVALSGGHTFGKNQCQFIMDRLYNFSNTGLPDPTLDKSYLSTLRKQCPRNGNQSVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFS 274          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER1_SORBI (Cationic peroxidase SPC4 (Fragment) OS=Sorghum bicolor PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.881e-52
Identity = 103/182 (56.59%), Postives = 137/182 (75.27%), Query Frame = 2
Query:   92 AQKPPVAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARPNLSLRKEALKFVDELRARVHKEC-GRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFAT----VVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTV 613
            A++PP+A GLS+ FY +SCPK ESIVR  +Q+A+++D+GLAAGL+R+HFHDCFVQGCD SVLL+GS +   EQ A PNL+LR  A K ++++  R+HKEC G VVSC+D+LALAARDSV +SGGP+Y +PLGRRDS +FAT    +  LP P +    +L    +   +A + VALSGGHT+
Sbjct:   32 ARQPPLAPGLSFDFYKRSCPKAESIVRSFVQDAVRRDVGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPTAFKAINDIHDRLHKECGGTVVSCSDVLALAARDSVVVSGGPSYKVPLGRRDSASFATQQDVLSGLPPPTAAVPALLAVLSKINLDATDLVALSGGHTI 213          
The following BLAST results are available for this feature:
BLAST of FC878214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PER4_VITVI4.415e-5342.47Peroxidase 4 OS=Vitis vinifera GN=GSVIVT0002396700... [more]
PER3_ARATH9.835e-5343.13Peroxidase 3 OS=Arabidopsis thaliana GN=PER3 PE=1 ... [more]
PER49_ARATH1.285e-5241.92Peroxidase 49 OS=Arabidopsis thaliana GN=PER49 PE=... [more]
PER2_ARMRU1.678e-5243.82Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER1A_ARMRU1.678e-5243.23Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER34_ARATH2.191e-5244.09Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER59_ARATH3.737e-5244.11Peroxidase 59 OS=Arabidopsis thaliana GN=PER59 PE=... [more]
PER10_ARATH3.737e-5242.59Peroxidase 10 OS=Arabidopsis thaliana GN=PER10 PE=... [more]
PER37_ARATH4.881e-5243.43Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=... [more]
PER1_SORBI4.881e-5256.59Cationic peroxidase SPC4 (Fragment) OS=Sorghum bic... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878214 ID=FC878214; Name=FC878214; organism=Citrus clementina; type=EST; length=875bp
AACAATGGCAACTGCTTCAGCTTCTTCTTTCATTTCTCTTCTTTTGATAT
CTTCTCTTTTGCTTGCTTCTTTATCCTCTTCTTTCACTGAGGCACAAAAG
CCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCAGAGCTGTCC
CAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCCTGAAAAAAG
ATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCATGATTGCTTC
GTTCAGGGATGTGATGGATCAGTGTTGCTAGAGGGATCAACTAGTGAGCA
AAATGCACGTCCAAACCTAAGCTTAAGGAAAGAGGCTTTAAAATTTGTAG
ACGAACTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTGTTTCTTGC
GCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTGTCTGGAGG
GCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAACATTCGCAA
CAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGATCCTCAAC
GATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCCCTCTCCGG
CGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTTACCAATCGCCTCT
ATCCCAAACAAGACCCCACACTGGACAAAACATTCGCCAACAATCTCAAA
AAGACATGCCCCACTTCGGATTCCAACAACACCACCGTCTTCGACATCCG
GTCCCCGAACGTGTTCGACAACAAGTACTACGTTGACTTGATGAACCGAC
AGGGGTTGCTGACGTCGGACCAGGATCTTTACACGGACAAGAGAACGAGG
AGCATTGTCACGAGCTTTGCTGTGG
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