FC878214

Overview
NameFC878214
Unique NameFC878214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.524e-37
Identity = 97/247 (39.27%), Postives = 137/247 (55.47%), Query Frame = 2
Query:  161 SIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEG----STSEQNARPNLSLRKEALKFVDELRARVHKECGRV-VSCADILALAARDSVALSGGPNYDLPLGRRDSKT--FATVVN-LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF--TNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            S VR  + +A+  +  + A LIR+HFHDCFV GCDG +LL+      T EQN+ PN +  +   + + + +  V   C  V VSCADILA+AARDSVA  GG  Y + LGR D++T  F+  +N LP+PF N TV +  F +K F  RE VAL+G HTVG A C     +  + P          A  L+  C  + +++       +P +FD  YY +L + QG++ SDQ L  D  T   VT ++
Sbjct:   84 SAVRAVVDSAIDAETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPNANSAR-GYEVIAQAKQSVINTCPNVSVSCADILAIAARDSVAKLGGQTYSVALGRSDARTANFSGAINQLPAPFDNLTVQIQKFSDKNFTLREMVALAGAHTVGFARCSTVCTSGNVNP----------AAQLQCNCSATLTDSDLQQLDTTPTMFDKVYYDNLNSNQGIMFSDQVLTGDATTAGFVTDYS 319          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER61_ARATH (Probable peroxidase 61 OS=Arabidopsis thaliana GN=PER61 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 3.396e-37
Identity = 95/271 (35.06%), Postives = 140/271 (51.66%), Query Frame = 2
Query:  101 PPVAKGLSWTFYD--QSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF-ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTT---VF---DIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            PPV   L W +Y    +C   E+ +R Q++   K D  +A  L+R+ + DC V GCDGS+LL+G  SE+ A  N  L       +D+++  +   C  VVSCADIL LA RD+V ++G P+Y +  GRRD  T  A  V+LPSP  +    L  F+ K  +  +   L G H++G  HC    +RLY      K DPT++ T  + L+  CP       T   V+   D  S N F + YY  +++   +L  DQ+L  +  ++ I   FA
Sbjct:   31 PPVK--LVWHYYKLTNTCDDAETYIRYQVEKFYKNDSSIAPKLLRLLYSDCMVNGCDGSILLQGPNSERTAPQNRGL--GGFVIIDKIKQVLESRCPGVVSCADILNLATRDAVHMAGAPSYPVFTGRRDGGTLNADAVDLPSPSISVDESLAYFKSKGLDVLDMTTLLGAHSMGKTHCSYVVDRLYNFKNTGKPDPTMNTTLVSQLRYLCPPRTQKGQTDPLVYLNPDSGSSNRFTSSYYSRVLSHNAVLRVDQELLNNDDSKEITQEFA 297          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.755e-36
Identity = 88/263 (33.46%), Postives = 137/263 (52.09%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF---ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPT----LDKTFANNLKKTCP--TSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            LS  +Y ++CP+ E  + + + +        A G +R+ FHDC V GCD S+L+  +   TSE++A  N SL  +A   +  ++  V  +C  +VSC+DIL  A R  +++ GGP  ++  GR+DS           L  P      I++ F       +E VAL G HT+G +HC  F +R++ K D      ++  +A  L+K C   T+D   +   D+ +P  FDN YY +L +  GLL SD  +  D RTRS+V  +A
Sbjct:   22 LSSDYYTKTCPEFEETLVQIVTDKQIAAPTTAVGTLRLFFHDCMVDGCDASILVASTPRKTSERDADINRSLPGDAFDVITRIKTAVELKCPNIVSCSDILVGATRSLISMVGGPRVNVKFGRKDSLVSDMNRVEGKLARPNMTMDHIISIFESSGLTVQEMVALVGAHTIGFSHCKEFASRIFNKSDQNGPVEMNPKYAAELRKLCANYTNDEQMSAFNDVFTPGKFDNMYYKNLKHGYGLLQSDHAIAFDNRTRSLVDLYA 284          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER26_ARATH (Probable peroxidase 26 OS=Arabidopsis thaliana GN=PER26 PE=2 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 4.904e-36
Identity = 94/270 (34.81%), Postives = 142/270 (52.59%), Query Frame = 2
Query:  104 PVAKGLSWTFYD--QSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTF-ATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTT---VF---DIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            P  + L+W +Y    +C   E+ VR Q++   K D  +A  L+R+ + DCFV GCD SVLLEG  SE+ A  N  L    L  +D+++  + + C  VVSCADIL LA RD+V L+G P+Y +  GRRD  T     V+LPSP  +    ++ F+ +  N  +   L G H++G  HC    +RLY      K  PT++K F + + K CP       T   V+   D  S + F + +Y  +++ + +L  DQ L  +  T+ I   F+
Sbjct:   30 PSMQKLTWHYYKVYNTCENAENFVRHQVEIFYKNDKSIAPKLLRLLYSDCFVSGCDASVLLEGPNSEKMAPQNRGLGGFVL--IDKIKIVLEQRCPGVVSCADILNLATRDAVHLAGAPSYPVFTGRRDGLTSDKQTVDLPSPSISWDQAMSYFKSRGLNVLDMATLLGSHSMGRTHCSYVVDRLYNYNKTGKPSPTMNKYFLSEMAKQCPPRTRKGQTDPLVYLNPDSGSNHSFTSSFYSRILSNKSVLEVDQQLLYNDDTKQISKEFS 297          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.405e-36
Identity = 99/263 (37.64%), Postives = 142/263 (53.99%), Query Frame = 2
Query:  113 KGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEG----STSEQNARPNLSLRKEALKFVDELRARVHKECGRV-VSCADILALAARDSVALSGGPNYDLPLGRRDSKT--FATVVN-LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF--TNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            K LS     +SC  + S V+  + +A+  +  + A LIR+HFHDCFV GCDG +LL+      T EQN+ PN +      + + + +  V   C  + VSCADILA+AARDS+A  GG  Y + LGR D+ T  F+  +N LP+P  N TV +  F +K F  RE VAL+G HTVG A C     +  + P          A  L+  C  + +++       +P VFD  YY +L N QG++ SDQ L  +  T   VT+++
Sbjct:   69 KYLSQQLTQESC--VFSAVKGVVDSAIDNETRMGASLIRLHFHDCFVDGCDGGILLDDINGTFTGEQNSPPN-NNSVRGFEVIAQAKQSVVDSCPNISVSCADILAIAARDSLAKLGGQTYTVALGRSDATTANFSGAINQLPAPSDNLTVQIQKFSDKNFTVREMVALAGAHTVGFARCSTVCTSGNVNP----------AAQLQCNCSATLTDSDLQQLDTTPAVFDKVYYDNLNNNQGIMFSDQVLTGNTTTAGFVTTYS 318          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.151e-35
Identity = 90/251 (35.86%), Postives = 131/251 (52.19%), Query Frame = 2
Query:  137 DQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNARPNLSLRKEALKFVDELRARVHKECGRV-VSCADILALAARDSVALSGGPNYDLPLGRRDSKT---FATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSF 868
            D +C  + S V++ +  A+  +  + A LIR+HFHDCFV GCDG +LL  +   T EQ A  N S        +D+ +     +C    VSCAD+LA+AARD+        Y++ LGR+D++T         LP+PF N ++    F +K FN RE V L+G HTVG + C              L++  +  L+ TCP S ++   V    SP  FD KY+ +L+  QGLL SDQ+L     T + V  +
Sbjct:   68 DSNC--VFSAVKEIVDAAITAETRMGASLIRLHFHDCFVDGCDGGILLNDTANFTGEQGAPAN-SNSVRGFSVIDQAKRNAQTKCADTPVSCADVLAIAARDAFRKFTNQTYNITLGRQDARTANLTGANTQLPAPFDNLSIQTAKFADKGFNQREMVVLAGAHTVGFSRCAVLCT------STNLNQNRSATLQCTCPASANDTGLVGLDPSPGTFDKKYFEELVKGQGLLFSDQELMQSNATVTAVRRY 309          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER2_MAIZE (Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.208e-34
Identity = 94/257 (36.58%), Postives = 143/257 (55.64%), Query Frame = 2
Query:  131 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLE----GSTSEQNARP-NLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVAL--SGGPNYDLPLGRRD---SKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAF-TNRLYPKQDPTLDKTFANNLKKTCP---TSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIV 859
            +Y  +CP+ E+IV+  ++ A+ ++ G  A +IR+ FHDCFV+GCD SVLL+      T E+ A P N SLR    + +D ++  +   C  VVSCADI+A AARD+      G  ++D+P GR D   S    +V  L  P SN + + + F  K  +  + V LSG HTVG +HC +F ++RL    D  ++   A  L+  CP   T+  + T + D+ +PN  D +YY ++++   L TSD  L T   T  +V
Sbjct:   39 YYRYTCPQAEAIVKASMEKAIAQNPGNGAAVIRMLFHDCFVEGCDASVLLDPTPFSPTPEKLAAPNNPSLR--GFELIDAIKDALEAACPGVVSCADIIAFAARDASCFLSQGKVSFDMPSGRLDGTFSNASESVKFLVPPTSNLSDLASSFAVKGMSLEDLVVLSGAHTVGRSHCSSFVSDRLDVPSD--INPALAAFLRTRCPPNTTTSDDPTVMQDVVTPNAMDIQYYKNVLSHTVLFTSDAALLTSPETAKLV 291          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.095e-27
Identity = 90/256 (35.16%), Postives = 131/256 (51.17%), Query Frame = 2
Query:  137 DQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNAR-PNLSLRKEALKFVDELRARVHKECGRV-VSCADILALAARDSVALSGGPNYDLPLGRRDSKT---FATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCP--AFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTT--VFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSF 868
            D++C  + S V++ +  A+  +  + A LIR+ FHDCFV GCD  +LL  +   T EQ A   N S+R  A+  +++ +  V  +   + VSCADIL++AARDS     G  Y + LGR+D++T         L  P  N T  L  F  K FN  E VAL G HT+G A CP    +  + P +  TL+          C  S + N T  V    +P  +D +Y+ D++N QGLL SD +L     T + V  +
Sbjct:   67 DEAC--VFSAVKEVVVAAINAEARMGASLIRLFFHDCFVDGCDAGLLLNDTATFTGEQTAAGNNNSVRGFAV--IEQAKQNVKTQMPDMSVSCADILSIAARDSFEKFSGSTYTVTLGRKDARTANFTGANTQLVGPNENLTSQLTKFAAKGFNGTEMVALLGSHTIGFARCPLLCISTFINPARVSTLN----------CNCSGTVNATGLVGLDPTPTTWDQRYFSDVVNDQGLLFSDNELLKGNTTNAAVRRY 308          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER2_HORVU (Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.611e-18
Identity = 45/116 (38.79%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  536 TVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYP-KQDPTLDKTFANNLKKTCPTSDSNNTTV--FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAV 874
            + +++ F  ++ +  + V+LSG HT G+AHCPAF +R    + +P +D  FA  L+  C   + + T     D+R+P+VFDNKYY DL+ RQGL  SDQ L     T+ + T F++
Sbjct:    1 STLISSFANRSLDVADLVSLSGAHTFGVAHCPAFEDRSSRVRHNPAIDGKFATALRNKCSGDNPSGTLTQKLDVRTPDVFDNKYYFDLIARQGLFKSDQGLIDHPTTKRMATRFSL 116          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PERX_LUPPO (Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.772e-15
Identity = 43/121 (35.54%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  515 PSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTV--FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            P P S+ T +   F  K     +   LSGGHT+G + C  F  R+Y   D  +D  FA + +  CP S    T +   D  +PN FDN YY DL++ +GLL SDQ L+      ++V +++
Sbjct:    2 PGPSSDLTTLTTKFAAKGLTPSDLTVLSGGHTIGQSECQFFKTRIY--NDTNIDTNFATSRQANCPFSAGGETNLAPLDSLTPNRFDNNYYKDLVSNRGLLHSDQVLFNGGSQDTLVRTYS 120          
The following BLAST results are available for this feature:
BLAST of FC878214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PER1_SOLLC1.524e-3739.27Suberization-associated anionic peroxidase 1 OS=So... [more]
PER61_ARATH3.396e-3735.06Probable peroxidase 61 OS=Arabidopsis thaliana GN=... [more]
PER6_ARATH3.755e-3633.46Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER26_ARATH4.904e-3634.81Probable peroxidase 26 OS=Arabidopsis thaliana GN=... [more]
PER2_SOLLC6.405e-3637.64Suberization-associated anionic peroxidase 2 OS=So... [more]
PERN_IPOBA4.151e-3535.86Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER2_MAIZE1.208e-3436.58Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1[more]
PERA_IPOBA1.095e-2735.16Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER2_HORVU4.611e-1838.79Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV... [more]
PERX_LUPPO4.772e-1535.54Peroxidase (Fragment) OS=Lupinus polyphyllus PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878214 ID=FC878214; Name=FC878214; organism=Citrus clementina; type=EST; length=875bp
AACAATGGCAACTGCTTCAGCTTCTTCTTTCATTTCTCTTCTTTTGATAT
CTTCTCTTTTGCTTGCTTCTTTATCCTCTTCTTTCACTGAGGCACAAAAG
CCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCAGAGCTGTCC
CAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCCTGAAAAAAG
ATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCATGATTGCTTC
GTTCAGGGATGTGATGGATCAGTGTTGCTAGAGGGATCAACTAGTGAGCA
AAATGCACGTCCAAACCTAAGCTTAAGGAAAGAGGCTTTAAAATTTGTAG
ACGAACTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTGTTTCTTGC
GCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTGTCTGGAGG
GCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAACATTCGCAA
CAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGATCCTCAAC
GATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCCCTCTCCGG
CGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTTACCAATCGCCTCT
ATCCCAAACAAGACCCCACACTGGACAAAACATTCGCCAACAATCTCAAA
AAGACATGCCCCACTTCGGATTCCAACAACACCACCGTCTTCGACATCCG
GTCCCCGAACGTGTTCGACAACAAGTACTACGTTGACTTGATGAACCGAC
AGGGGTTGCTGACGTCGGACCAGGATCTTTACACGGACAAGAGAACGAGG
AGCATTGTCACGAGCTTTGCTGTGG
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