FC878214

Overview
NameFC878214
Unique NameFC878214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10680 contig Ccv1_Contig10680:125..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: APX6_ARATH (Putative L-ascorbate peroxidase 6 OS=Arabidopsis thaliana GN=APX6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.423e-12
Identity = 49/149 (32.89%), Postives = 83/149 (55.70%), Query Frame = 2 
Query:  179 IQNALKKDI--GLAAGLIRIHFHDCFVQGCDG-SVLLEGSTSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVG 616
            +QN ++K +  G AAG++R+ FHD      D  S  + GS + +  RP     K++LK + + + +V +   + VS AD++++A  ++V++ GGP   + LGR DS        LP    + + +   F+ K F+ +E VALSG HT+G
Sbjct:  101 MQNEIRKVVTKGKAAGVLRLVFHDAGTFELDDHSGGINGSIAYELERPENIGLKKSLKVLAKAKVKVDEI--QPVSWADMISVAGSEAVSICGGPTIPVVLGRLDSAQPDPEGKLPPETLSASGLKECFKRKGFSTQELVALSGAHTIG 247
The following BLAST results are available for this feature:
BLAST of FC878214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
APX6_ARATH8.423e-1232.89Putative L-ascorbate peroxidase 6 OS=Arabidopsis t... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA6DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878214 ID=FC878214; Name=FC878214; organism=Citrus clementina; type=EST; length=875bp
AACAATGGCAACTGCTTCAGCTTCTTCTTTCATTTCTCTTCTTTTGATAT
CTTCTCTTTTGCTTGCTTCTTTATCCTCTTCTTTCACTGAGGCACAAAAG
CCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCAGAGCTGTCC
CAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCCTGAAAAAAG
ATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCATGATTGCTTC
GTTCAGGGATGTGATGGATCAGTGTTGCTAGAGGGATCAACTAGTGAGCA
AAATGCACGTCCAAACCTAAGCTTAAGGAAAGAGGCTTTAAAATTTGTAG
ACGAACTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTGTTTCTTGC
GCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTGTCTGGAGG
GCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAACATTCGCAA
CAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGATCCTCAAC
GATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCCCTCTCCGG
CGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTTACCAATCGCCTCT
ATCCCAAACAAGACCCCACACTGGACAAAACATTCGCCAACAATCTCAAA
AAGACATGCCCCACTTCGGATTCCAACAACACCACCGTCTTCGACATCCG
GTCCCCGAACGTGTTCGACAACAAGTACTACGTTGACTTGATGAACCGAC
AGGGGTTGCTGACGTCGGACCAGGATCTTTACACGGACAAGAGAACGAGG
AGCATTGTCACGAGCTTTGCTGTGG
back to top