FC878214

Overview
NameFC878214
Unique NameFC878214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length875
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10680 contig Ccv1_Contig10680:125..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.919e-48
Identity = 109/261 (41.76%), Postives = 155/261 (59.39%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNARPNL-SLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVV---NLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSN---NTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            LS TFY +SCP+  + ++  +  A+ ++  + A L+R+HFHDCFVQGCDGSVLL  +   T EQ A PN+ S+R      VD ++A+V   C  VVSCADILA+AARDSV   GGP++ + LGRRDS T +  +   +LP+P  +   +   F +K  +  + VALSG HT+GLA C  F   +Y   D  ++  FA   +  CP +  N   N    D  +P  FDN YY +L+ ++GLL SDQ L+    T  +V ++A
Sbjct:   27 LSPTFYSRSCPRALATIKAAVTAAVAQEARMGASLLRLHFHDCFVQGCDGSVLLNDTATFTGEQTANPNVGSIR--GFGVVDNIKAQVEAVCPGVVSCADILAVAARDSVVALGGPSWRVLLGRRDSTTASLALANSDLPAPSLDLANLTAAFAKKRLSRTDLVALSGAHTIGLAQCKNFRAHIY--NDTNVNAAFATLRRANCPAAAGNGDGNLAPLDTATPTAFDNAYYTNLLAQRGLLHSDQQLFNGGATDGLVRTYA 283          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER1_ORYSJ (Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PRX74 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.919e-48
Identity = 113/263 (42.97%), Postives = 156/263 (59.32%), Query Frame = 2
Query:  131 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLE---GSTSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVVN----LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY--------PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            FY  SCP +E++VRK++  AL     LA  L+R+HFHDCFV+GCDGSVLL+    ST+E++A PN +LR     FV+ ++A V K C   VSCAD+LAL ARD+V LS GP + +PLGRRD +   ++ N    LP P +N T +   F  K  + ++ V LS GHT+G +HC +FT+RLY           DPTL+  +   L+  C +   N T V  D  S   FD  Y+ ++  R+GL  SD +L T+  TR+ V   A
Sbjct:   28 FYSNSCPSVEAVVRKEMVRALGAAPSLAGPLLRMHFHDCFVRGCDGSVLLDSAGNSTAEKDATPNQTLR--GFGFVERVKAAVEKACPGTVSCADVLALMARDAVWLSKGPFWAVPLGRRDGR--VSIANETDQLPPPTANFTELTQMFAAKNLDLKDLVVLSAGHTIGTSHCFSFTDRLYNFTGLDNAHDIDPTLELQYMARLRSKCTSLQDNTTLVEMDPGSFKTFDLGYFKNVAKRRGLFHSDGELLTNGFTRAYVQRHA 286          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.919e-48
Identity = 110/265 (41.51%), Postives = 152/265 (57.36%), Query Frame = 2
Query:  131 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLE----GSTSEQNARP-NLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSK--TFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQ--------DPTLDKTFANNLKKTCPTSDSNN---TTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            FYD SCP  E++VR+ +  A  KD G+AAGLIR+HFHDCFV+GCDGSVLL     G  +E++A P N SLR      +D  +  V + C R VSCADI+A AARDS++L+G  +Y +P GRRD +       V+LP P S    + + F+ K  +  + V LSG HTVG + C +F  R++           D  L  ++A  L+  CP++ +     TT  D  +PNV DN YY  L    GL  SD  L  + +  ++V+SFA
Sbjct:   39 FYDTSCPNAEALVRQAVAAAFAKDAGIAAGLIRLHFHDCFVRGCDGSVLLTVNPGGGQTERDALPNNPSLR--GFDVIDAAKTAVEQSCPRTVSCADIVAFAARDSISLTGSVSYQVPAGRRDGRVSNATETVDLPPPTSTAQSLTDLFKAKELSVEDMVVLSGAHTVGRSFCASFFKRVWNTSTNPATAIVDAGLSPSYAQLLRALCPSNTTQTTPITTAMDPGTPNVLDNNYYKLLPRGMGLFFSDNQLRVNPQMAALVSSFA 301          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PERE5_ARMRU (Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.507e-48
Identity = 103/248 (41.53%), Postives = 158/248 (63.71%), Query Frame = 2
Query:  131 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATVVN--LPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYT 835
            FY ++CP + +I++  I + L+ D  +AA ++R+HFHDCFV+GCD S+LL+ S S   E++A PN++  +     +D ++  + + C R VSCADIL +A++ SV LSGGP++ +PLGRRDS + F  + N  LPSPF     +   F +   N   + VALSGGHT G A C   T RLY      + DPTL+ ++  +L++ CP + +    V FD+ +PN FDN++Y +L N +GL+ SDQ+L++
Sbjct:    6 FYSRTCPSVFNIIKNVIVDELQTDPRIAASILRLHFHDCFVRGCDASILLDTSKSFRTEKDAAPNVNSAR-GFNVIDRMKTALERACPRTVSCADILTIASQISVLLSGGPSWAVPLGRRDSVEAFFDLANTALPSPFFTLAQLKKAFADVGLNRPSDLVALSGGHTFGRARCLFVTARLYNFNGTNRPDPTLNPSYLADLRRLCPRNGNGTVLVNFDVMTPNTFDNQFYTNLRNGKGLIQSDQELFS 252          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER4_ARATH (Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.274e-48
Identity = 112/260 (43.08%), Postives = 154/260 (59.23%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATVVNLPSPFSNTTVILND----FREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLY-TDKRTRSIVTSFA 871
            LS TFYDQ+C    S +R  I+ A+ ++  +AA LIR+HFHDCFV GCD SV+L  + + ++ R +L+  + A  F  +D+ ++ V   C  VVSCADI+A+AARD+    GGP YD+ +GRRDS   F  + +   P  N    LND    F  K  N R+ VALSG HT+G A C  F  RLY      +D  F++  K+ CP +  + T    D  +PN FDN YY +LM ++GLL SDQ L+ T   T SIVT ++
Sbjct:   21 LSPTFYDQTCQNALSTIRSSIRTAISRERRMAASLIRLHFHDCFVNGCDASVMLVATPTMESERDSLANFQSARGFEVIDQAKSAVESVCPGVVSCADIIAVAARDASEYVGGPRYDVKVGRRDSTNAFRAIADRDLP--NFRASLNDLSELFLRKGLNTRDLVALSGAHTLGQAQCLTFKGRLYDNSS-DIDAGFSSTRKRRCPVNGGDTTLAPLDQVTPNSFDNNYYRNLMQKKGLLESDQVLFGTGASTDSIVTEYS 277          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER5_ARATH (Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 4.276e-48
Identity = 108/260 (41.54%), Postives = 154/260 (59.23%), Query Frame = 2
Query:  119 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGST---SEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS----KTFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKKTCPT-SDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLY-TDKRTRSIVTSFA 871
            LS TFYDQSC    S +R  ++ A+ ++  +AA LIR+HFHDCFV GCD S+LLEG++   SE++A PN        + +D+ ++ V K C  +VSCADI+A+AARD+    GGP + + +GRRDS    K  A    LP        +   F +K  N R+ VALSG HT+G + C  F +RLY +    +D  FA+  K+ CPT     N    D+ +PN FDN YY +LM ++GLL +DQ L+ +   T  IV+ ++
Sbjct:   26 LSPTFYDQSCRNALSKIRSSVRTAIARERRMAASLIRMHFHDCFVHGCDASILLEGTSTIESERDALPNFK-SVRGFEVIDKAKSEVEKVCPGIVSCADIIAVAARDASEYVGGPKWAVKVGRRDSTAAFKALANSGELPGFKDTLDQLSGLFSKKGLNTRDLVALSGAHTIGQSQCFLFRDRLY-ENSSDIDAGFASTRKRRCPTVGGDGNLAALDLVTPNSFDNNYYKNLMQKKGLLVTDQVLFGSGASTDGIVSEYS 283          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.276e-48
Identity = 107/248 (43.15%), Postives = 154/248 (62.10%), Query Frame = 2
Query:  131 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATVVN--LPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYT 835
            FY ++CP + +I+   I N L+ D  +AA L+R+HFHDCFV+GCD S+LL+ STS   E++A PN +        +D ++A + + C R VSCADI+ +A++ SV LSGGP + +PLGRRDS + F  + N  LPSPFS  T +   F +   N   + VALSGGHT G A C   T RLY      + DP+L+ T+   L++ CP + +    V FD  +P  FD +YY +L+N +GL+ SDQ L++
Sbjct:   35 FYFRTCPPIFNIIGDTIVNELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKN-SVRGFDVIDRMKAAIERACPRTVSCADIITIASQISVLLSGGPWWPVPLGRRDSVEAFFALANTALPSPFSTLTQLKTAFADVGLNRPSDLVALSGGHTFGKAQCQFVTPRLYNFNGTNRPDPSLNPTYLVELRRLCPQNGNGTVLVNFDSVTPTTFDRQYYTNLLNGKGLIQSDQVLFS 281          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.526e-48
Identity = 103/262 (39.31%), Postives = 152/262 (58.02%), Query Frame = 2
Query:  107 VAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKT--FATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCP-TSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSF 868
            + +G    FY  +CP+ ESIV+  ++   + D  +A G++R+HFHDCFV GCDGS+L+EGS +E+ A PN +L+      +++ + ++   C  VVSCADILALAARDSV  + G  + +P GRRD +    A   +LP+ F +  +    F  K  N ++ VAL+G HT+G A C    +RL+        DP++D TF   L+  CP   D++     D  S N FD  Y+ +L N +G+L SDQ L+TD  T+  V  F
Sbjct:   28 LGQGTRVGFYSSTCPRAESIVQSTVRAHFQSDPTVAPGILRMHFHDCFVLGCDGSILIEGSDAERTAIPNRNLK--GFDVIEDAKTQIEAICPGVVSCADILALAARDSVVATRGLTWSVPTGRRDGRVSRAADAGDLPAFFDSVDIQKRKFLTKGLNTQDLVALTGAHTIGTAGCAVIRDRLFNFNSTGGPDPSIDATFLPQLRALCPQNGDASRRVGLDTGSVNNFDTSYFSNLRNGRGVLESDQKLWTDASTQVFVQRF 287          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER64_ARATH (Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=1 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.526e-48
Identity = 102/264 (38.64%), Postives = 160/264 (60.61%), Query Frame = 2
Query:  113 KGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEG---STSEQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVV--NLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTVFDI-RSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFA 871
            + LS  +YD +CP+ + IV   ++ A+  D  + A L+R+HFHDCFV+GCDGSVLL+    + +E++  PN+SL   A   +D  +  + ++C  +VSCADIL+LAARD+VALSGGP + +P GR+D +    +    LP+P  N + +  +F ++  +  + VALSGGHT+G AHC +F NRL+      + DPTL+ +FA  L+  CP  ++      ++  +   FDN YY  L+  + L +SD+ L     T+ +V  +A
Sbjct:   21 QALSPHYYDHTCPQADHIVTNAVKKAMSNDQTVPAALLRMHFHDCFVRGCDGSVLLDSKGKNKAEKDGPPNISL--HAFYVIDNAKKALEEQCPGIVSCADILSLAARDAVALSGGPTWAVPKGRKDGRISKAIETRQLPAPTFNISQLRQNFGQRGLSMHDLVALSGGHTLGFAHCSSFQNRLHKFNTQKEVDPTLNPSFAARLEGVCPAHNTVKNAGSNMDGTVTSFDNIYYKMLIQGKSLFSSDESLLAVPSTKKLVAKYA 282          
BLAST of FC878214 vs. ExPASy Swiss-Prot
Match: PER3_ARMRU (Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 9.526e-48
Identity = 106/248 (42.74%), Postives = 153/248 (61.69%), Query Frame = 2
Query:  131 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARPNLSLRKEALKFVDELRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATVVN--LPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYT 835
            FY ++CP + +I+   I + L+ D  +AA L+R+HFHDCFV+GCD S+LL+ STS   E++A PN +  +     +D ++  + + C R VSCAD+L +A++ SV LSGGP + +PLGRRDS + F  + N  LPSPF     +   F +   N   + VALSGGHT G A C   T RLY      + DPTLD T+   L+  CP + +    V FD+ +PN FD +YY +L N +GL+ SDQ+L++
Sbjct:   35 FYFRTCPSVFNIIGDIIVDELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNANSAR-GFGVIDRMKTSLERACPRTVSCADVLTIASQISVLLSGGPWWPVPLGRRDSVEAFFDLANTALPSPFFTLAQLKKAFADVGLNRPSDLVALSGGHTFGRAQCQFVTPRLYNFNGTNRPDPTLDPTYLVQLRALCPQNGNGTVLVNFDVVTPNTFDRQYYTNLRNGKGLIQSDQELFS 281          
The following BLAST results are available for this feature:
BLAST of FC878214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
PER70_MAIZE1.919e-4841.76Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER1_ORYSJ1.919e-4842.97Peroxidase 1 OS=Oryza sativa subsp. japonica GN=PR... [more]
PER1_MAIZE1.919e-4841.51Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PERE5_ARMRU2.507e-4841.53Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1... [more]
PER4_ARATH3.274e-4843.08Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 ... [more]
PER5_ARATH4.276e-4841.54Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=2 ... [more]
PER23_ARATH4.276e-4843.15Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PERN1_TOBAC9.526e-4839.31Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER64_ARATH9.526e-4838.64Peroxidase 64 OS=Arabidopsis thaliana GN=PER64 PE=... [more]
PER3_ARMRU9.526e-4842.74Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA6DF10RM1 IVIA1 Citrus clementina cDNA clone IC0AAA6DF10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878214 ID=FC878214; Name=FC878214; organism=Citrus clementina; type=EST; length=875bp
AACAATGGCAACTGCTTCAGCTTCTTCTTTCATTTCTCTTCTTTTGATAT
CTTCTCTTTTGCTTGCTTCTTTATCCTCTTCTTTCACTGAGGCACAAAAG
CCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCAGAGCTGTCC
CAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCCTGAAAAAAG
ATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCATGATTGCTTC
GTTCAGGGATGTGATGGATCAGTGTTGCTAGAGGGATCAACTAGTGAGCA
AAATGCACGTCCAAACCTAAGCTTAAGGAAAGAGGCTTTAAAATTTGTAG
ACGAACTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTGTTTCTTGC
GCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTGTCTGGAGG
GCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAACATTCGCAA
CAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGATCCTCAAC
GATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCCCTCTCCGG
CGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTTACCAATCGCCTCT
ATCCCAAACAAGACCCCACACTGGACAAAACATTCGCCAACAATCTCAAA
AAGACATGCCCCACTTCGGATTCCAACAACACCACCGTCTTCGACATCCG
GTCCCCGAACGTGTTCGACAACAAGTACTACGTTGACTTGATGAACCGAC
AGGGGTTGCTGACGTCGGACCAGGATCTTTACACGGACAAGAGAACGAGG
AGCATTGTCACGAGCTTTGCTGTGG
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