FC878215

Overview
NameFC878215
Unique NameFC878215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length787
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.201e-19
Identity = 49/141 (34.75%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  300 IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIF-ALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVV 719
            +PE C++ V  + +P + C +A ++ + + AA SD VWE  LPS Y  L+     +   +LSKK+IF +L    V  ++G K  W+++ +G+ C  +S   + I   +   YW WI   ES+F  VA L+ + WFEV G +
Sbjct:   35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLV----LQSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKI 171          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.494e-19
Identity = 46/139 (33.09%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  291 LGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIED-RRYWNWIPTEESRFHVVAYLQQIWWFE 704
            L  +PE C++ +  + +P + C  A ++  F  A  SD VWE  LP++Y+ L+    P R  +  K+  F+L + P+  +DG   +WL++ +G+ C+ +S  AM ++ + D  + + WIP  ESRF  VA L++ + FE
Sbjct:   24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLI---TPSRVFSSKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFE 159          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.958e-18
Identity = 42/146 (28.77%), Postives = 76/146 (52.05%), Query Frame = 3
Query:  297 DIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFA-LLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPL 731
            D+PE C+A +  + +P + C ++ ++   R AA S++ WE  LPS+Y+  +D          S K +F      P+  +DG    W+++ +G+ C  +S + + I  ++   +W W+   +SRF  VA L  + WFE+ G +   L
Sbjct:    5 DLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYID----NSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCWFEIRGKISTSL 146          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.863e-18
Identity = 42/141 (29.79%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  300 IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVK 722
            +PE+CVA +  + TP +  + A ++  FR A  SD VWE  LP++Y  ++        +  SKK+++  L   +  D+G K   +++++G++   +S++ ++IT  + R YW+W P  +SRF     L    W E+ G ++
Sbjct:    2 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDWLEIIGKIQ 142          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.607e-18
Identity = 46/150 (30.67%), Postives = 79/150 (52.67%), Query Frame = 3
Query:  291 LGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKFPLPAD 740
            + ++PE C+A +    TP ++C L+ ++  FR AA SD VW + LP+++        P   L   K+  F+L+  P+  +       L+R +G  C  ++ +A+ I    ++RYW+WI    +RF  VA L  +WW E+ G +   L +D
Sbjct:    1 MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP--AGFAAPAG-LPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLLSD 147          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: PP2B5_ARATH (F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.769e-16
Identity = 52/152 (34.21%), Postives = 81/152 (53.29%), Query Frame = 3
Query:  267 NGESMGPGLGDIPESCVACVFMYLTPPEICNLARL-NHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVV 719
            NG S      D+P+ C+A +  + + P    LA L + +F    +SDSVWE  LP    D + L+P  R  + SKK+++  L  P P  +G     LD+ +G+ C+ +S K + I+ + + +YW WI   ESRF  V  L  I  F++ GV+
Sbjct:   28 NGSSAS--FDDLPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPP--PDYVSLLPKSRVFS-SKKELYFALCDPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIPESRFDEVPELLNIDSFDIRGVL 174          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.374e-15
Identity = 45/163 (27.61%), Postives = 77/163 (47.24%), Query Frame = 3
Query:  222 KLKIEMGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRF-HVVAYLQQIWWFEV 707
            ++K  +  S S     G +    LGD+PE C++ +  + +P + C  A ++  F  A  SD VWE  +P  Y+ LL      ++ +  K+  FAL    V  +   K++W+++ TG+ C+ +S  A+    +     W WI    S +   V  L    WFE+
Sbjct:   17 RVKKTLRLSASDQQSQGVTEPLSLGDLPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLS---RSQHFSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASAL---NLSTHHTWKWITNPVSAWLETVPELLTTRWFEI 173          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: PP2B3_ARATH (F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.998e-15
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  300 IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRY 632
            +PE+C++ +  + TP + C  A ++ AF  A  SDSVWE  LP +Y  L+    PE  + LSKK++ F+L   P+  + G K  WLD+ +G  C+ +S K M I+ +   ++
Sbjct:   16 LPENCISNIISFTTPRDACFAASVSKAFESAVQSDSVWEKFLPLDYSSLV----PESRVFLSKKELCFSLCRVPLLIEGGKKSFWLDKTSGEKCIMLSPKGMVISWVNSPQF 123          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2B14_ARATH (F-box protein PP2-B14 OS=Arabidopsis thaliana GN=PP2B14 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.540e-14
Identity = 39/141 (27.66%), Postives = 75/141 (53.19%), Query Frame = 3
Query:  300 IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVK 722
            +PE+C+A +  + +P +  + + ++  FR A  SD VWE  LPS+Y+ L+       +   SKK+I+  L   +  D+  K   +++ +G++   +S + ++IT  +   YW+W    +SRF   A L      E++G ++
Sbjct:    4 LPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDSRFSESAELIITDRLEIEGKIQ 144          
BLAST of FC878215 vs. ExPASy Swiss-Prot
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.425e-12
Identity = 39/141 (27.66%), Postives = 73/141 (51.77%), Query Frame = 3
Query:  300 IPESCVACVFMYLTPPEICNLARLNHAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVK 722
            +PE+CVA +  + +P +  + + ++  FR A  SD VWE  LPS+Y+ L+        +  SKK+I+  L   +  D+  K   +++ +G++   +S + ++IT  +   Y +W    +SRF   A L      E+ G ++
Sbjct:    4 LPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRIFSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSDSRFSESAELITTDRLEIKGKIQ 144          
The following BLAST results are available for this feature:
BLAST of FC878215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PP2B1_ARATH1.201e-1934.75F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP... [more]
SKIP3_ARATH3.494e-1933.09F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]
P2B12_ARATH2.958e-1828.77Putative F-box protein PP2-B12 OS=Arabidopsis thal... [more]
P2B15_ARATH3.863e-1829.79F-box protein PP2-B15 OS=Arabidopsis thaliana GN=P... [more]
P2B11_ARATH8.607e-1830.67F-box protein PP2-B11 OS=Arabidopsis thaliana GN=P... [more]
PP2B5_ARATH2.769e-1634.21F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP... [more]
PP2B7_ARATH1.374e-1527.61F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP... [more]
PP2B3_ARATH3.998e-1535.71F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP... [more]
P2B14_ARATH7.540e-1427.66F-box protein PP2-B14 OS=Arabidopsis thaliana GN=P... [more]
P2B13_ARATH2.425e-1227.66F-box protein PP2-B13 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC07RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878215 ID=FC878215; Name=FC878215; organism=Citrus clementina; type=EST; length=787bp
ATTAAATAGAAAAATAAAAATATCGAACACGAGTCGCACACAGCACGCTC
TTGACTTTCTCCCTAACCAAACATCCTCTCTCTCTCTCTCTCTCTCTCTC
TCGCTTTATCCTTCAGTCTCTTCTCCACCATGACGACGAGTTAGGCATAA
GCAACAGCACAAACACGCAAAGCGAAGAAGAAGAAGGGAAAAAAAGGCTT
TGGTAAATTCAGTAAAGTAATAAATTAAAAATAGAAATGGGGGCGTCGCT
ATCGAGCCTGACCGACAACGGAGAGAGCATGGGGCCGGGACTGGGAGACA
TACCGGAGAGCTGCGTGGCGTGCGTGTTCATGTACTTGACGCCGCCGGAG
ATTTGCAATCTCGCCAGATTAAACCACGCTTTCCGCGGTGCGGCGTCGTC
TGATTCCGTGTGGGAAAACAAGCTCCCTTCTAACTATCAAGATCTGCTCG
ATTTGATGCCTCCTGAACGCTACCTTAACTTGTCCAAAAAAGACATTTTT
GCCCTCCTCTCCCGCCCGGTTCCCTTCGATGATGGCAATAAGGAAGTGTG
GTTAGATAGAGTGACGGGAAGAGTTTGCTTGTCAATATCAACAAAGGCTA
TGGCAATCACCGGAATTGAGGATCGCAGATATTGGAATTGGATTCCCACT
GAAGAATCAAGATTCCATGTGGTGGCGTATTTGCAACAAATATGGTGGTT
CGAGGTGGATGGGGTAGTGAAGTTTCCACTTCCTGCTGATGTCTACACCG
TGTCATTCAGGCTTCATCTTGGAAGATTTGCCAAGAG
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