FC878218

Overview
NameFC878218
Unique NameFC878218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13627 contig Ccv1_Contig13627:64..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNY3 (30S ribosomal protein S5 OS=Synechocystis sp. (strain PCC 6803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.447e-25
Identity = 67/164 (40.85%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  432 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            KT +EK +D  ++E                 L FRAI                        +K   D ++ ++ VP+TK  +  H ++G  G AKV++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGSNN LNNARA + A++ ++ + EV+ ERG  +E
Sbjct:    6 KTSREKKEDTNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNETGQVGVGVGKAGDVIGAVRKGVADGKKQLIEVPLTKSNSITHITNGVSGGAKVVVRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSNNPLNNARAAINALETLRTFSEVAEERGVSVE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_ACAM1 (30S ribosomal protein S5 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsE PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.447e-25
Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++ +V VP+T+  + PH   G  GAAKVM+RPAAPGTGVIAGGAVR VLE+AGV N L KQLGS+N LNNARAT+ A+  ++ + EV+ ERG  +E+
Sbjct:   69 RKGVADGKKQLVEVPLTRSNSIPHPMIGRGGAAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSDNPLNNARATLHALASLRTFSEVAGERGIEVEK 172          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNP6 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 54/104 (51.92%), Postives = 80/104 (76.92%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T+  + PH S G+ GAA+V++RPAAPGTGVIAGGAVR VLE+AGV+N L K+LGS + LNNARA + A+  ++ ++EV++ R  P+E+
Sbjct:   75 RKGVADGKKHLVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQ 178          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNE7 (30S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsE PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 54/104 (51.92%), Postives = 80/104 (76.92%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T+  + PH S G+ GAA+V++RPAAPGTGVIAGGAVR VLE+AGV+N L K+LGS + LNNARA + A+  ++ ++EV++ R  P+E+
Sbjct:   75 RKGVADGKKHLVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQ 178          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_PHATR (30S ribosomal protein S5, chloroplastic OS=Phaeodactylum tricornutum GN=rps5 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25
Identity = 54/98 (55.10%), Postives = 77/98 (78.57%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 905
            +K+  D R+N++ +P+TK L+ PH   G+FGA KV++RP+  G+GVIAGGAVRIVLE+AGV+N + KQLGSNN LNNARA+V A+Q +    +V+++R
Sbjct:   76 KKAKTDGRKNLIELPITKALSIPHNVAGNFGACKVIMRPSIEGSGVIAGGAVRIVLEVAGVKNVIAKQLGSNNLLNNARASVCALQNLTTKAQVAKKR 173          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_CYAA5 (30S ribosomal protein S5 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsE PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.182e-25
Identity = 65/164 (39.63%), Postives = 92/164 (56.10%), Query Frame = 3
Query:  432 KTKKEKVKDG-FEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            K+ ++K KD  ++E                 L FRAI                        +K   D ++ ++ V +TK  +  H + G  G AKV++RPAAPGTGVIAGGAVR VLE+AG++N L KQLGSNN LNNARA + A++ ++ + EV++ERG P+E
Sbjct:    6 KSNRDKSKDSNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNEKGQVGVGVGKAGDVIGAVRKGVADGKKQLIDVSLTKSSSITHVAKGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELAGLKNILAKQLGSNNPLNNARAVINALEGLRTFSEVAQERGVPLE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_RHDSA (30S ribosomal protein S5, chloroplastic OS=Rhodomonas salina GN=rps5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.600e-24
Identity = 55/99 (55.56%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 908
            +K+  D ++ IV+VP+TK  + PH   G  GAAKV++RP+APG+GVIAGG+VR +LE+AGV+N L KQLGSNN LNNARA   A+ K+K + +V+++RG
Sbjct:   67 KKAVSDGKKKIVSVPITKDSSIPHIVKGRSGAAKVIMRPSAPGSGVIAGGSVRTILELAGVKNILAKQLGSNNPLNNARAATDALLKLKTFSQVAQDRG 165          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_CYAPA (30S ribosomal protein S5, cyanelle OS=Cyanophora paradoxa GN=rps5 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.600e-24
Identity = 54/99 (54.55%), Postives = 77/99 (77.78%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 908
            +K+A D ++++V VP+T+  + PH  DG  GAA+V++RP+A GTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA + A+ ++K + + +++RG
Sbjct:   67 KKAAADGKKHVVEVPLTRSNSIPHPIDGIGGAARVIMRPSAEGTGVIAGGAVRTVLELAGVRNILAKQLGSNNPLNNARAAMNALSRLKTFSQFAKDRG 165          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_CYAP8 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 8801) GN=rpsE PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.729e-24
Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            +K   D ++ ++ V +TK  +  H + G  G AKV++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA + A++ ++ + EV++ERG P+E
Sbjct:   67 RKGVADGKKQLIDVSLTKASSITHITRGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSSNPLNNARAVINALEGLRTFSEVAQERGVPLE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PELTS (30S ribosomal protein S5 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsE PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.564e-24
Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   DA++N++ VP+    T PH   G+FGA KV+L+PAAPGTGVIAGG VR +LE+AGV + L K LGSNNA N  RAT+ A++ +K   EV+R RG P+EE
Sbjct:   61 RKGIEDAKKNMIKVPLAG-TTIPHEVIGEFGAGKVLLKPAAPGTGVIAGGPVRAILELAGVRDILTKSLGSNNANNMVRATIEALKSLKTPEEVARLRGKPVEE 163          
The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_SYNY31.447e-2540.8530S ribosomal protein S5 OS=Synechocystis sp. (str... [more]
RS5_ACAM11.447e-2556.7330S ribosomal protein S5 OS=Acaryochloris marina (... [more]
RS5_SYNP64.210e-2551.9230S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_SYNE74.210e-2551.9230S ribosomal protein S5 OS=Synechococcus elongatu... [more]
RR5_PHATR4.210e-2555.1030S ribosomal protein S5, chloroplastic OS=Phaeoda... [more]
RS5_CYAA57.182e-2539.6330S ribosomal protein S5 OS=Cyanothece sp. (strain... [more]
RR5_RHDSA1.600e-2455.5630S ribosomal protein S5, chloroplastic OS=Rhodomo... [more]
RR5_CYAPA1.600e-2454.5530S ribosomal protein S5, cyanelle OS=Cyanophora p... [more]
RS5_CYAP82.729e-2453.4030S ribosomal protein S5 OS=Cyanothece sp. (strain... [more]
RS5_PELTS3.564e-2454.8130S ribosomal protein S5 OS=Pelotomaculum thermopr... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bp
TTACATACACATCACCAATGGCAACAACAGCATCAGCAACAAGAGCAACC
CTTTCTCTCTCGTCATTGTCTTTGTCTCTATCTCTTCACTCGACTCCCCG
CCTCTCATTCCTCTCCACTGCAAAACTCACCAGGCTCCCAAAACTCACCC
TCTCGACCGTCCTCGTCAGAGCCTCCGAATCCGACAAACCAAACGGCATC
GTTTTCGACGACTTCAACAACCCAGATGAAGACGCCGCCGTTTTCGACCC
ACCGACGCCCCCGGAGGATTACACTCCCCCGCCCTCCTTCGACGAGCTCC
CAATGGAAACCGAGGACGAAATTGCCGCTGCTTACGAAGAATTGTACGGA
CCCGCGTACGCGGGAGTCAGCGTCTTGGGAAATGATGTTTATGTGATGGA
CTCGAAGGCGAAAAAGACGAGTGCTTTTGGGAAAACGAAGAAGGAGAAAG
TGAAGGATGGGTTTGAAGAAAGAGTGGTTCAAGTCAGAAGAGTGACGAAG
GTGGTCAAAGGAGGGAAGCAGTTGAAGTTTAGAGCTATTGTTGTGGTTGG
TGATAAGAAAGGCCAAGTTGGTGTTGGCGTTGCCAAAGCTAAAGAAGTTA
TTGCTGCCGTACAGAAATCCGCCGTTGATGCTAGGAGGAATATTGTTACT
GTCCCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATGGTGATTT
TGGGGCGGCTAAGGTGATGCTCAGACCTGCTGCTCCTGGTACTGGAGTGA
TTGCTGGAGGTGCTGTTAGAATTGTTCTCGAAATGGCAGGTGTTGAGAAT
GCTTTGGGGAAGCAACTTGGGAGTAACAATGCCCTCAACAATGCTAGAGC
AACGGTTGTTGCAGTGCAGAAAATGAAGCAGTGGCGTGAAGTTTCTCGTG
AACGCGGGAATCCAATGGAAGAAT
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