FC878218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNY3 (30S ribosomal protein S5 OS=Synechocystis sp. (strain PCC 6803) GN=rpsE PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.447e-25 Identity = 67/164 (40.85%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 432 KTKKEKVKD-GFEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 KT +EK +D ++E L FRAI +K D ++ ++ VP+TK + H ++G G AKV++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGSNN LNNARA + A++ ++ + EV+ ERG +E Sbjct: 6 KTSREKKEDTNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNETGQVGVGVGKAGDVIGAVRKGVADGKKQLIEVPLTKSNSITHITNGVSGGAKVVVRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSNNPLNNARAAINALETLRTFSEVAEERGVSVE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_ACAM1 (30S ribosomal protein S5 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsE PE=3 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.447e-25 Identity = 59/104 (56.73%), Postives = 77/104 (74.04%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++ +V VP+T+ + PH G GAAKVM+RPAAPGTGVIAGGAVR VLE+AGV N L KQLGS+N LNNARAT+ A+ ++ + EV+ ERG +E+ Sbjct: 69 RKGVADGKKQLVEVPLTRSNSIPHPMIGRGGAAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSDNPLNNARATLHALASLRTFSEVAGERGIEVEK 172
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNP6 (30S ribosomal protein S5 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsE PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25 Identity = 54/104 (51.92%), Postives = 80/104 (76.92%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T+ + PH S G+ GAA+V++RPAAPGTGVIAGGAVR VLE+AGV+N L K+LGS + LNNARA + A+ ++ ++EV++ R P+E+ Sbjct: 75 RKGVADGKKHLVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQ 178
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNE7 (30S ribosomal protein S5 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsE PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25 Identity = 54/104 (51.92%), Postives = 80/104 (76.92%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T+ + PH S G+ GAA+V++RPAAPGTGVIAGGAVR VLE+AGV+N L K+LGS + LNNARA + A+ ++ ++EV++ R P+E+ Sbjct: 75 RKGVADGKKHLVNVPLTRDQSIPHPSTGEGGAAQVLIRPAAPGTGVIAGGAVRTVLELAGVKNVLAKRLGSKSPLNNARAALEALSSLRTFQEVAQSRDIPVEQ 178
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_PHATR (30S ribosomal protein S5, chloroplastic OS=Phaeodactylum tricornutum GN=rps5 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 4.210e-25 Identity = 54/98 (55.10%), Postives = 77/98 (78.57%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 905 +K+ D R+N++ +P+TK L+ PH G+FGA KV++RP+ G+GVIAGGAVRIVLE+AGV+N + KQLGSNN LNNARA+V A+Q + +V+++R Sbjct: 76 KKAKTDGRKNLIELPITKALSIPHNVAGNFGACKVIMRPSIEGSGVIAGGAVRIVLEVAGVKNVIAKQLGSNNLLNNARASVCALQNLTTKAQVAKKR 173
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_CYAA5 (30S ribosomal protein S5 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsE PE=3 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 7.182e-25 Identity = 65/164 (39.63%), Postives = 92/164 (56.10%), Query Frame = 3 Query: 432 KTKKEKVKDG-FEEXXXXXXXXXXXXXXXXXLKFRAIXXXXXXXXXXXXXXXXXXXXXXXXQKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 K+ ++K KD ++E L FRAI +K D ++ ++ V +TK + H + G G AKV++RPAAPGTGVIAGGAVR VLE+AG++N L KQLGSNN LNNARA + A++ ++ + EV++ERG P+E Sbjct: 6 KSNRDKSKDSNWQERVIQIRRVSKVVKGGKKLSFRAIVVVGNEKGQVGVGVGKAGDVIGAVRKGVADGKKQLIDVSLTKSSSITHVAKGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELAGLKNILAKQLGSNNPLNNARAVINALEGLRTFSEVAQERGVPLE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_RHDSA (30S ribosomal protein S5, chloroplastic OS=Rhodomonas salina GN=rps5 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.600e-24 Identity = 55/99 (55.56%), Postives = 77/99 (77.78%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 908 +K+ D ++ IV+VP+TK + PH G GAAKV++RP+APG+GVIAGG+VR +LE+AGV+N L KQLGSNN LNNARA A+ K+K + +V+++RG Sbjct: 67 KKAVSDGKKKIVSVPITKDSSIPHIVKGRSGAAKVIMRPSAPGSGVIAGGSVRTILELAGVKNILAKQLGSNNPLNNARAATDALLKLKTFSQVAQDRG 165
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_CYAPA (30S ribosomal protein S5, cyanelle OS=Cyanophora paradoxa GN=rps5 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.600e-24 Identity = 54/99 (54.55%), Postives = 77/99 (77.78%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERG 908 +K+A D ++++V VP+T+ + PH DG GAA+V++RP+A GTGVIAGGAVR VLE+AGV N L KQLGSNN LNNARA + A+ ++K + + +++RG Sbjct: 67 KKAAADGKKHVVEVPLTRSNSIPHPIDGIGGAARVIMRPSAEGTGVIAGGAVRTVLELAGVRNILAKQLGSNNPLNNARAAMNALSRLKTFSQFAKDRG 165
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_CYAP8 (30S ribosomal protein S5 OS=Cyanothece sp. (strain PCC 8801) GN=rpsE PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 2.729e-24 Identity = 55/103 (53.40%), Postives = 77/103 (74.76%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 +K D ++ ++ V +TK + H + G G AKV++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA + A++ ++ + EV++ERG P+E Sbjct: 67 RKGVADGKKQLIDVSLTKASSITHITRGVSGGAKVIVRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSSNPLNNARAVINALEGLRTFSEVAQERGVPLE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PELTS (30S ribosomal protein S5 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsE PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 3.564e-24 Identity = 57/104 (54.81%), Postives = 75/104 (72.12%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K DA++N++ VP+ T PH G+FGA KV+L+PAAPGTGVIAGG VR +LE+AGV + L K LGSNNA N RAT+ A++ +K EV+R RG P+EE Sbjct: 61 RKGIEDAKKNMIKVPLAG-TTIPHEVIGEFGAGKVLLKPAAPGTGVIAGGPVRAILELAGVRDILTKSLGSNNANNMVRATIEALKSLKTPEEVARLRGKPVEE 163 The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bpback to top |