FC878218

Overview
NameFC878218
Unique NameFC878218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13627 contig Ccv1_Contig13627:64..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNS9 (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9902) GN=rpsE PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24
Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERG  +E+
Sbjct:  109 RKGVADGKKHLVKVPLTRHSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSSLRTHKETAKERGISLEQ 212          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNPW (30S ribosomal protein S5 OS=Synechococcus sp. (strain WH7803) GN=rpsE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.080e-24
Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERG  +E+
Sbjct:  109 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALDSLRTHKETAKERGISLEQ 212          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMS (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain AS9601) GN=rpsE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24
Identity = 54/104 (51.92%), Postives = 76/104 (73.08%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++N+V VP+T   + P  S G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  + VSRERG  +E+
Sbjct:  100 RKGVSDGKKNLVRVPLTPNNSIPTLSLGSDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSVSRERGISLEQ 203          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMM (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24
Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERG  +E+
Sbjct:  103 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISLEQ 206          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM3 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsE PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24
Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERG  +E+
Sbjct:  104 RKGVADGKKHLVKVPLTRHNSIPTLSNGREGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISLEQ 207          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_THAPS (30S ribosomal protein S5, chloroplastic OS=Thalassiosira pseudonana GN=rps5 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24
Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 905
            +K+  D R+N++ VP+TK L+ PH   GD GA K+++RP+  G+GVIAGGAVR VLE+AG++N + KQLGS+N LNNAR  +VA++ +    EV R+R
Sbjct:   76 KKAKTDGRKNLIDVPITKSLSIPHAVIGDLGACKIIMRPSIEGSGVIAGGAVRTVLEVAGIKNVIAKQLGSDNLLNNARTAIVALESLTTLDEVKRKR 173          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNSC (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9605) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.037e-23
Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERG  +E+
Sbjct:  108 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKETAKERGISLEQ 211          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNPX (30S ribosomal protein S5 OS=Synechococcus sp. (strain WH8102) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.037e-23
Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T++ + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +E ++ERG  +E+
Sbjct:  109 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKETAKERGISLEQ 212          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_EMIHU (30S ribosomal protein S5, chloroplastic OS=Emiliania huxleyi GN=rps5 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.354e-23
Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 878
            +K   D ++N++TVP+T   + PH+ +G FGAAK++LRP+APG GVIAGGA RIVLE+AG++N L KQLGSN+ LNNARAT+  +  ++
Sbjct:   67 RKGVTDGKKNVITVPLTSSNSIPHKINGRFGAAKLVLRPSAPGCGVIAGGAPRIVLELAGIKNILSKQLGSNSLLNNARATIDGLSNLR 155          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM9 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++N+V VP+T   + P  S G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERG  +E+
Sbjct:  101 RKGVSDGKKNLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 204          
The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_SYNS94.655e-2449.0430S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_SYNPW6.080e-2449.0430S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_PROMS7.941e-2451.9230S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROMM7.941e-2449.0430S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM37.941e-2449.0430S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RR5_THAPS7.941e-2452.0430S ribosomal protein S5, chloroplastic OS=Thalass... [more]
RS5_SYNSC1.037e-2349.0430S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_SYNPX1.037e-2349.0430S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RR5_EMIHU1.354e-2356.1830S ribosomal protein S5, chloroplastic OS=Emilian... [more]
RS5_PROM91.769e-2350.9630S ribosomal protein S5 OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bp
TTACATACACATCACCAATGGCAACAACAGCATCAGCAACAAGAGCAACC
CTTTCTCTCTCGTCATTGTCTTTGTCTCTATCTCTTCACTCGACTCCCCG
CCTCTCATTCCTCTCCACTGCAAAACTCACCAGGCTCCCAAAACTCACCC
TCTCGACCGTCCTCGTCAGAGCCTCCGAATCCGACAAACCAAACGGCATC
GTTTTCGACGACTTCAACAACCCAGATGAAGACGCCGCCGTTTTCGACCC
ACCGACGCCCCCGGAGGATTACACTCCCCCGCCCTCCTTCGACGAGCTCC
CAATGGAAACCGAGGACGAAATTGCCGCTGCTTACGAAGAATTGTACGGA
CCCGCGTACGCGGGAGTCAGCGTCTTGGGAAATGATGTTTATGTGATGGA
CTCGAAGGCGAAAAAGACGAGTGCTTTTGGGAAAACGAAGAAGGAGAAAG
TGAAGGATGGGTTTGAAGAAAGAGTGGTTCAAGTCAGAAGAGTGACGAAG
GTGGTCAAAGGAGGGAAGCAGTTGAAGTTTAGAGCTATTGTTGTGGTTGG
TGATAAGAAAGGCCAAGTTGGTGTTGGCGTTGCCAAAGCTAAAGAAGTTA
TTGCTGCCGTACAGAAATCCGCCGTTGATGCTAGGAGGAATATTGTTACT
GTCCCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATGGTGATTT
TGGGGCGGCTAAGGTGATGCTCAGACCTGCTGCTCCTGGTACTGGAGTGA
TTGCTGGAGGTGCTGTTAGAATTGTTCTCGAAATGGCAGGTGTTGAGAAT
GCTTTGGGGAAGCAACTTGGGAGTAACAATGCCCTCAACAATGCTAGAGC
AACGGTTGTTGCAGTGCAGAAAATGAAGCAGTGGCGTGAAGTTTCTCGTG
AACGCGGGAATCCAATGGAAGAAT
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