FC878218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNS9 (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9902) GN=rpsE PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 4.655e-24 Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T++ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ ++ +E ++ERG +E+ Sbjct: 109 RKGVADGKKHLVKVPLTRHSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSSLRTHKETAKERGISLEQ 212
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNPW (30S ribosomal protein S5 OS=Synechococcus sp. (strain WH7803) GN=rpsE PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 6.080e-24 Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T++ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ ++ +E ++ERG +E+ Sbjct: 109 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALDSLRTHKETAKERGISLEQ 212
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMS (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain AS9601) GN=rpsE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24 Identity = 54/104 (51.92%), Postives = 76/104 (73.08%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++N+V VP+T + P S G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + VSRERG +E+ Sbjct: 100 RKGVSDGKKNLVRVPLTPNNSIPTLSLGSDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSVSRERGISLEQ 203
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMM (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9313) GN=rpsE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24 Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T++ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ ++ +E ++ERG +E+ Sbjct: 103 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISLEQ 206
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM3 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9303) GN=rpsE PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24 Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T++ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ ++ +E ++ERG +E+ Sbjct: 104 RKGVADGKKHLVKVPLTRHNSIPTLSNGREGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALASLRTHKETAKERGISLEQ 207
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_THAPS (30S ribosomal protein S5, chloroplastic OS=Thalassiosira pseudonana GN=rps5 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.941e-24 Identity = 51/98 (52.04%), Postives = 73/98 (74.49%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 905 +K+ D R+N++ VP+TK L+ PH GD GA K+++RP+ G+GVIAGGAVR VLE+AG++N + KQLGS+N LNNAR +VA++ + EV R+R Sbjct: 76 KKAKTDGRKNLIDVPITKSLSIPHAVIGDLGACKIIMRPSIEGSGVIAGGAVRTVLEVAGIKNVIAKQLGSDNLLNNARTAIVALESLTTLDEVKRKR 173
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNSC (30S ribosomal protein S5 OS=Synechococcus sp. (strain CC9605) GN=rpsE PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.037e-23 Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T++ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ ++ +E ++ERG +E+ Sbjct: 108 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKETAKERGISLEQ 211
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNPX (30S ribosomal protein S5 OS=Synechococcus sp. (strain WH8102) GN=rpsE PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.037e-23 Identity = 51/104 (49.04%), Postives = 78/104 (75.00%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T++ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ ++ +E ++ERG +E+ Sbjct: 109 RKGVADGKKHLVKVPLTRHNSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKETAKERGISLEQ 212
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_EMIHU (30S ribosomal protein S5, chloroplastic OS=Emiliania huxleyi GN=rps5 PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 1.354e-23 Identity = 50/89 (56.18%), Postives = 70/89 (78.65%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMK 878 +K D ++N++TVP+T + PH+ +G FGAAK++LRP+APG GVIAGGA RIVLE+AG++N L KQLGSN+ LNNARAT+ + ++ Sbjct: 67 RKGVTDGKKNVITVPLTSSNSIPHKINGRFGAAKLVLRPSAPGCGVIAGGAPRIVLELAGIKNILSKQLGSNSLLNNARATIDGLSNLR 155
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM9 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9312) GN=rpsE PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23 Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++N+V VP+T + P S G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + SRERG +E+ Sbjct: 101 RKGVSDGKKNLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 204 The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bpback to top |