FC878218

Overview
NameFC878218
Unique NameFC878218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length924
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13627 contig Ccv1_Contig13627:64..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM2 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++N+V VP+T   + P  S G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERG  +E+
Sbjct:  100 RKGVSDGKKNLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 203          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_MICAN (30S ribosomal protein S5 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.941e-23
Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920
            +K   D ++ ++ V +TK  +  H + G  G A+V++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA V A++ ++ + EV+++RG  +E
Sbjct:   67 RKGVADGKKQLIEVSLTKASSITHLTRGASGGAQVIMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSDNPLNNARAAVNALETLRTFSEVAKDRGVSIE 169          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMT (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain NATL2A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23
Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T+  + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  ++ERG  +E+
Sbjct:  102 RKGVADGKKHLVRVPLTRNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSELRTHKATAKERGISLEQ 205          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM1 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain NATL1A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23
Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T+  + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  ++ERG  +E+
Sbjct:  102 RKGVADGKKHLVRVPLTRNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSELRTHKATAKERGISLEQ 205          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMP (30S ribosomal protein S5 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T   + P  S G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERG  +E+
Sbjct:  100 RKGVSDGKKHLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 203          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMA (30S ribosomal protein S5 OS=Prochlorococcus marinus GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++N+V VP+T   + P  S+G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+  ++  +  ++ERG  +E+
Sbjct:  105 RKGVADGKKNLVRVPLTPNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKATAKERGISLEQ 208          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM5 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpsE PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T   + P  S G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  SRERG  +E+
Sbjct:  100 RKGVSDGKKHLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 203          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM0 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpsE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.779e-23
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++N+V VP+T   + P  S G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA+ +++  +  S+ERG  +E+
Sbjct:  100 RKGVSDGKKNLVRVPLTPNNSIPTLSLGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASKERGISLEQ 203          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNR3 (30S ribosomal protein S5 OS=Synechococcus sp. (strain RCC307) GN=rpsE PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.147e-22
Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923
            +K   D ++++V VP+T+  + P  S G  GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS   LNNARA +VA++ ++  ++ ++ERG  +E+
Sbjct:  112 KKGVADGKKHLVKVPLTRSNSIPTISTGRDGAASVLMRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALRDLRTHQDTAKERGITLEQ 215          
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_ODOSI (30S ribosomal protein S5, chloroplastic OS=Odontella sinensis GN=rps5 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.357e-22
Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 3
Query:  612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 905
            +K+  D R+N++ +P+TK L+ PH   G FGA K+++RP+  G+GVIAGG+VR VLE+AG++N + KQLGSNN LNNARA V  +  +    +V ++R
Sbjct:   76 KKAKADGRKNLIKIPITKSLSIPHNVIGIFGACKIIMRPSIEGSGVIAGGSVRTVLEVAGIKNVIAKQLGSNNVLNNARAAVSGLNNLTTKSQVLKKR 173          
The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS5_PROM21.769e-2350.9630S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_MICAN3.941e-2351.4630S ribosomal protein S5 OS=Microcystis aeruginosa... [more]
RS5_PROMT5.147e-2348.0830S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM15.147e-2348.0830S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROMP6.722e-2350.0030S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROMA6.722e-2349.0430S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM56.722e-2350.0030S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_PROM08.779e-2350.0030S ribosomal protein S5 OS=Prochlorococcus marinu... [more]
RS5_SYNR31.147e-2248.0830S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RR5_ODOSI4.357e-2248.9830S ribosomal protein S5, chloroplastic OS=Odontel... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bp
TTACATACACATCACCAATGGCAACAACAGCATCAGCAACAAGAGCAACC
CTTTCTCTCTCGTCATTGTCTTTGTCTCTATCTCTTCACTCGACTCCCCG
CCTCTCATTCCTCTCCACTGCAAAACTCACCAGGCTCCCAAAACTCACCC
TCTCGACCGTCCTCGTCAGAGCCTCCGAATCCGACAAACCAAACGGCATC
GTTTTCGACGACTTCAACAACCCAGATGAAGACGCCGCCGTTTTCGACCC
ACCGACGCCCCCGGAGGATTACACTCCCCCGCCCTCCTTCGACGAGCTCC
CAATGGAAACCGAGGACGAAATTGCCGCTGCTTACGAAGAATTGTACGGA
CCCGCGTACGCGGGAGTCAGCGTCTTGGGAAATGATGTTTATGTGATGGA
CTCGAAGGCGAAAAAGACGAGTGCTTTTGGGAAAACGAAGAAGGAGAAAG
TGAAGGATGGGTTTGAAGAAAGAGTGGTTCAAGTCAGAAGAGTGACGAAG
GTGGTCAAAGGAGGGAAGCAGTTGAAGTTTAGAGCTATTGTTGTGGTTGG
TGATAAGAAAGGCCAAGTTGGTGTTGGCGTTGCCAAAGCTAAAGAAGTTA
TTGCTGCCGTACAGAAATCCGCCGTTGATGCTAGGAGGAATATTGTTACT
GTCCCTATGACTAAGTACTTGACTTTCCCACACAGATCTGATGGTGATTT
TGGGGCGGCTAAGGTGATGCTCAGACCTGCTGCTCCTGGTACTGGAGTGA
TTGCTGGAGGTGCTGTTAGAATTGTTCTCGAAATGGCAGGTGTTGAGAAT
GCTTTGGGGAAGCAACTTGGGAGTAACAATGCCCTCAACAATGCTAGAGC
AACGGTTGTTGCAGTGCAGAAAATGAAGCAGTGGCGTGAAGTTTCTCGTG
AACGCGGGAATCCAATGGAAGAAT
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