FC878218
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM2 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9215) GN=rpsE PE=3 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 1.769e-23 Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++N+V VP+T + P S G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + SRERG +E+ Sbjct: 100 RKGVSDGKKNLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 203
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_MICAN (30S ribosomal protein S5 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsE PE=3 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 3.941e-23 Identity = 53/103 (51.46%), Postives = 76/103 (73.79%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPME 920 +K D ++ ++ V +TK + H + G G A+V++RPAAPGTGVIAGGAVR VLE+AGV+N L KQLGS+N LNNARA V A++ ++ + EV+++RG +E Sbjct: 67 RKGVADGKKQLIEVSLTKASSITHLTRGASGGAQVIMRPAAPGTGVIAGGAVRTVLELAGVKNILAKQLGSDNPLNNARAAVNALETLRTFSEVAKDRGVSIE 169
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMT (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain NATL2A) GN=rpsE PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23 Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T+ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + ++ERG +E+ Sbjct: 102 RKGVADGKKHLVRVPLTRNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSELRTHKATAKERGISLEQ 205
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM1 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain NATL1A) GN=rpsE PE=3 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.147e-23 Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T+ + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + ++ERG +E+ Sbjct: 102 RKGVADGKKHLVRVPLTRNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSELRTHKATAKERGISLEQ 205
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMP (30S ribosomal protein S5 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpsE PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23 Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T + P S G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + SRERG +E+ Sbjct: 100 RKGVSDGKKHLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 203
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROMA (30S ribosomal protein S5 OS=Prochlorococcus marinus GN=rpsE PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23 Identity = 51/104 (49.04%), Postives = 75/104 (72.12%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++N+V VP+T + P S+G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ ++ + ++ERG +E+ Sbjct: 105 RKGVADGKKNLVRVPLTPNSSIPTLSNGRDGAASVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSLLRTHKATAKERGISLEQ 208
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM5 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9515) GN=rpsE PE=3 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 6.722e-23 Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T + P S G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + SRERG +E+ Sbjct: 100 RKGVSDGKKHLVRVPLTPNNSIPTLSKGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASRERGISLEQ 203
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_PROM0 (30S ribosomal protein S5 OS=Prochlorococcus marinus (strain MIT 9301) GN=rpsE PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 8.779e-23 Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++N+V VP+T + P S G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA+ +++ + S+ERG +E+ Sbjct: 100 RKGVSDGKKNLVRVPLTPNNSIPTLSLGRDGAANVLIRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALSQLRTHKSASKERGISLEQ 203
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RS5_SYNR3 (30S ribosomal protein S5 OS=Synechococcus sp. (strain RCC307) GN=rpsE PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.147e-22 Identity = 50/104 (48.08%), Postives = 77/104 (74.04%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRERGNPMEE 923 +K D ++++V VP+T+ + P S G GAA V++RPAAPGTGVIAGG++R VLE+AG++N L K+LGS LNNARA +VA++ ++ ++ ++ERG +E+ Sbjct: 112 KKGVADGKKHLVKVPLTRSNSIPTISTGRDGAASVLMRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNNARAAMVALRDLRTHQDTAKERGITLEQ 215
BLAST of FC878218 vs. ExPASy Swiss-Prot
Match: RR5_ODOSI (30S ribosomal protein S5, chloroplastic OS=Odontella sinensis GN=rps5 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 4.357e-22 Identity = 48/98 (48.98%), Postives = 71/98 (72.45%), Query Frame = 3 Query: 612 QKSAVDARRNIVTVPMTKYLTFPHRSDGDFGAAKVMLRPAAPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNNARATVVAVQKMKQWREVSRER 905 +K+ D R+N++ +P+TK L+ PH G FGA K+++RP+ G+GVIAGG+VR VLE+AG++N + KQLGSNN LNNARA V + + +V ++R Sbjct: 76 KKAKADGRKNLIKIPITKSLSIPHNVIGIFGACKIIMRPSIEGSGVIAGGSVRTVLEVAGIKNVIAKQLGSNNVLNNARAAVSGLNNLTTKSQVLKKR 173 The following BLAST results are available for this feature:
BLAST of FC878218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC878218 ID=FC878218; Name=FC878218; organism=Citrus clementina; type=EST; length=924bpback to top |