FC878222

Overview
NameFC878222
Unique NameFC878222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA7_ARATH (ATPase 7, plasma membrane-type OS=Arabidopsis thaliana GN=AHA7 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.708e-25
Identity = 59/140 (42.14%), Postives = 94/140 (67.14%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            K+G++S+EV++R   +G+N++  +KE+  +KFLGF   P+ +VME A L+A GL        D+ DF  I+ +LL+N+ + + +E  A +  A+L   +A KA  VRDG+ ++I A ELVPGDI+ I+ G+ +PADARL+
Sbjct:   33 KEGLTSNEVQERLTLFGYNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIGLAHGGGKPADYHDFVGIVVLLLINSTISFVEENNAGNAAAALMAQLAPKAKAVRDGKWNEIDAAELVPGDIVSIKLGDIIPADARLL 172          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA10_ARATH (ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.914e-25
Identity = 65/159 (40.88%), Postives = 97/159 (61.01%), Query Frame = 1
Query:  274 GADPGFVPDEMLEADIK---QGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            G D G +P E +   ++   QG+ S + E+R K +G N +  ++EN F+KFLGF   P+ +VME A L+A  L        DW DF  I+ +LL+NA + +++E  A +  A+L   +A+K  V+RDGQ  +  A  LVPGDII I+ G+ +PADARL+
Sbjct:   19 GIDLGILPLEEVFEYLRTSPQGLLSGDAEERLKIFGPNRLEEKQENRFVKFLGFMWNPLSWVMEAAALMAIALANSQSLGPDWEDFTGIVCLLLINATISFFEENNAGNAAAALMARLALKTRVLRDGQWQEQDASILVPGDIISIKLGDIIPADARLL 177          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_DUNBI (Plasma membrane ATPase OS=Dunaliella bioculata GN=PMA1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.727e-23
Identity = 61/161 (37.89%), Postives = 91/161 (56.52%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDYDAPEDFATYKELREQHALNPEEDPA 804
            K G+SS E   R +++G N++     N  + FLG+   P+ + ME A +++  L D  DF +I+G+LL+NA++ +Y+E  A   + +L   +A KA VVRDG    I A  LVPGD+I+I  G  VPAD +L+ +  A E         +Q AL  E  PA
Sbjct:   50 KHGLSSAEAAARLQQHGPNKLPDSSRNPVLVFLGYMWNPLAWAMEAAAIISIALLDVADFVLIVGLLLINAIISFYEESNADKAIKALTAALAPKAMVVRDGAIVTIDAVNLVPGDVILIRLGNIVPADVKLLEEEGADEGEQEAPMQIDQAALTGESLPA 210          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA5_ARATH (ATPase 5, plasma membrane-type OS=Arabidopsis thaliana GN=AHA5 PE=2 SV=3)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 56/140 (40.00%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            KQG++++E   R   +G N++  +KE+  +KFLGF   P+ +VME+A L+A  L        DW DF  I+ +LL+N+ + + +E  A +  A+L   +A K  V+RD Q S+ +A  LVPGD+I I+ G+ +PADARL+
Sbjct:   30 KQGLTANEASHRLDVFGPNKLEEKKESKLLKFLGFMWNPLSWVMEVAALMAIALANGGGRPPDWQDFVGIVCLLLINSTISFIEENNAGNAAAALMAGLAPKTKVLRDNQWSEQEASILVPGDVISIKLGDIIPADARLL 169          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: CTPF_MYCTU (Probable cation-transporting ATPase F OS=Mycobacterium tuberculosis GN=ctpF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 58/158 (36.71%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  259 SGAATGADPGFVPDE---MLEADIKQGISSHEVEQRRKRYGWNEITT-EKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            S +AT A  G    E   +LE+D   G+S  E  QR +R+G N +    + +L  + L  F  P++YV+ +A  + AGL++++D  VI G++++NA+VG+ QE +A   +  L+  +   A VVR+G E  + + ELVPGD++++  G+ VPAD RL+
Sbjct:    4 SVSATTAHHGLPAHEVVLLLESDPYHGLSDGEAAQRLERFGPNTLAVVTRASLLARILRQFHHPLIYVLLVAGTITAGLKEFVDAAVIFGVVVINAIVGFIQESKAEAALQGLRSMVHTHAKVVREGHEHTMPSEELVPGDLVLLAAGDKVPADLRLV 161          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: CTPF_MYCBO (Probable cation-transporting ATPase F OS=Mycobacterium bovis GN=ctpF PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.768e-22
Identity = 58/158 (36.71%), Postives = 96/158 (60.76%), Query Frame = 1
Query:  259 SGAATGADPGFVPDE---MLEADIKQGISSHEVEQRRKRYGWNEITT-EKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            S +AT A  G    E   +LE+D   G+S  E  QR +R+G N +    + +L  + L  F  P++YV+ +A  + AGL++++D  VI G++++NA+VG+ QE +A   +  L+  +   A VVR+G E  + + ELVPGD++++  G+ VPAD RL+
Sbjct:    4 SVSATTAHHGLPAHEVVLLLESDPYHGLSDGEAAQRLERFGPNTLAVVTRASLLARILRQFHHPLIYVLLVAGTITAGLKEFVDAAVIFGVVVINAIVGFIQESKAEAALQGLRSMVHTHAKVVREGHEHTMPSEELVPGDLVLLAAGDKVPADLRLV 161          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA4_ARATH (ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=AHA4 PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22
Identity = 56/140 (40.00%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            K+G+++   ++R   +G N++  +KE+ F+KFLGF   P+ +VME A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A KA V+RDG+  +  A  LVPGDII I+ G+ VPADARL+
Sbjct:   38 KEGLTTQAADERLALFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWGEQDAAILVPGDIISIKLGDIVPADARLL 177          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_WHEAT (Plasma membrane ATPase OS=Triticum aestivum GN=ha1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22
Identity = 56/140 (40.00%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            +QG++S E  QR + +G N++  +KE+  +KFLGF   P+ +VME+A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L  ++A K  V+RDG+  + +A  LVPGDI+ I+ G+ VPADARL+
Sbjct:   30 RQGLTSDEGAQRVEIFGLNKLEEKKESKVLKFLGFMWNPLSWVMEMAAIMAIALANGGGKPPDWQDFVGIIVLLVINSTISFIEENNAGNAAAALMANLAPKTKVLRDGRWGEQEASILVPGDIVSIKLGDIVPADARLL 169          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_SOLLC (Plasma membrane ATPase 1 OS=Solanum lycopersicum GN=LHA1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22
Identity = 54/140 (38.57%), Postives = 89/140 (63.57%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+++   ++R   +G+N++  +KE+ F+KFLGF   P+ +VME A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A KA V+RDG+  +  A  LVPGDII I+ G+ +PADARL+
Sbjct:   34 REGLTATAAQERLSIFGYNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWDEEDASVLVPGDIISIKLGDIIPADARLL 173          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_ORYSJ (Plasma membrane ATPase OS=Oryza sativa subsp. japonica GN=Os04g0656100 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.309e-22
Identity = 56/140 (40.00%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+SS E  +R + +G N++  +KE+  +KFLGF   P+ +VME+A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L  ++A K  V+RDG+  + +A  LVPGDII I+ G+ VPADARL+
Sbjct:   30 REGLSSEEGNRRIEMFGPNKLEEKKESKILKFLGFMWNPLSWVMEMAAIMAIALANGGGKPPDWEDFVGIIVLLVINSTISFIEENNAGNAAAALMANLAPKTKVLRDGRWGEQEAAILVPGDIISIKLGDIVPADARLL 169          
The following BLAST results are available for this feature:
BLAST of FC878222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PMA7_ARATH1.708e-2542.14ATPase 7, plasma membrane-type OS=Arabidopsis thal... [more]
PMA10_ARATH2.914e-2540.88ATPase 10, plasma membrane-type OS=Arabidopsis tha... [more]
PMA1_DUNBI2.727e-2337.89Plasma membrane ATPase OS=Dunaliella bioculata GN=... [more]
PMA5_ARATH1.768e-2240.00ATPase 5, plasma membrane-type OS=Arabidopsis thal... [more]
CTPF_MYCTU1.768e-2236.71Probable cation-transporting ATPase F OS=Mycobacte... [more]
CTPF_MYCBO1.768e-2236.71Probable cation-transporting ATPase F OS=Mycobacte... [more]
PMA4_ARATH2.309e-2240.00ATPase 4, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_WHEAT2.309e-2240.00Plasma membrane ATPase OS=Triticum aestivum GN=ha1... [more]
PMA1_SOLLC2.309e-2238.57Plasma membrane ATPase 1 OS=Solanum lycopersicum G... [more]
PMA1_ORYSJ2.309e-2240.00Plasma membrane ATPase OS=Oryza sativa subsp. japo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA55AC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878222 ID=FC878222; Name=FC878222; organism=Citrus clementina; type=EST; length=862bp
TCGCTATCTAAGATGGCTGCTCCTCGCGTTAGCTTCGGCGAAAAGGATAT
GGAGAACGGTGGTGATGACGCGGCCGAAAGGTCTCGCAAGTGGTCGCAGG
CTCCTGGCAACATCGAGGACCTCGACGAGTACACTGCTCTGCAGAAGTAC
ATCTCTACCTACAGAGACCCCAAGGCCCACGCCGCCGAGGATGCTGAGGC
CAACGCTGCCGATGCTGGCAAGGGCAAGGCCTGGTGGCAGTTCTGGCGCT
CCGGCAACTCTGGTGCTGCCACTGGTGCCGACCCTGGATTCGTCCCCGAT
GAGATGCTCGAGGCCGATATCAAGCAGGGTATCTCCTCTCACGAGGTTGA
GCAGCGCCGCAAGCGCTACGGTTGGAACGAAATCACCACCGAGAAGGAGA
ACTTGTTCATCAAGTTCCTCGGTTTCTTCACTGGTCCTGTCCTCTATGTT
ATGGAACTCGCTGTCCTCCTCGCCGCCGGTCTTCGTGACTGGATCGACTT
TGGTGTGATTATTGGTATTCTTCTTCTCAACGCCGTCGTCGGTTGGTACC
AGGAAAAGCAGGCTGCCGATGTCGTCGCTTCTCTCAAGGGTGACATCGCC
ATGAAGGCGACTGTCGTCCGTGATGGCCAGGAATCCGACATCAAGGCTCG
CGAGCTCGTCCCCGGTGACATTATCATCATCGAGGAGGGTGAGTCCGTTC
CTGCCGATGCCCGTCTTATCTGCGACTACGATGCTCCCGAGGACTTCGCT
ACCTACAAGGAGCTCCGCGAACAGCACGCTCTCAACCCTGAGGAGGACCC
CGCCGGTTCTGAGGACGCTGAGGACGATNGGTGAGGGTGTTGCCCACCAG
GGTCACTCCATC
back to top