FC878222

Overview
NameFC878222
Unique NameFC878222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5701 contig Ccv1_Contig5701:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA3_NICPL (Plasma membrane ATPase 3 OS=Nicotiana plumbaginifolia GN=PMA3 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.015e-22
Identity = 55/140 (39.29%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            K+G+++   ++R   +G+N++  +KE+ F KFLGF   P+ +VME A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A KA V+RDG+  +  A  LVPGDII I+ G+ +PADARL+
Sbjct:   34 KEGLTATAAQERLSIFGYNKLEEKKESKFSKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGKWKEEDAAVLVPGDIISIKLGDIIPADARLL 173          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA11_ARATH (ATPase 11, plasma membrane-type OS=Arabidopsis thaliana GN=AHA11 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.143e-22
Identity = 55/140 (39.29%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+++   ++R   +G N++  +KE+ F+KFLGF   P+ +VME A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A KA V+RDG+  +  A  LVPGDII I+ G+ VPADARL+
Sbjct:   34 REGLTTEAADERLALFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWGEQDAAILVPGDIISIKLGDIVPADARLL 173          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA2_ARATH (ATPase 2, plasma membrane-type OS=Arabidopsis thaliana GN=AHA2 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.717e-22
Identity = 54/140 (38.57%), Postives = 90/140 (64.29%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+++ E E R + +G N++  +KE+  +KFLGF   P+ +VME+A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A K  V+RDG+ S+ +A  LVPGDI+ I+ G+ +PADARL+
Sbjct:   30 REGLTTQEGEDRIQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLL 169          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA9_ARATH (ATPase 9, plasma membrane-type OS=Arabidopsis thaliana GN=AHA9 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 56/140 (40.00%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G++S E + R + +G N++  +KEN  +KFLGF   P+ +VMELA ++A  L        DW DF  I  +L++N+ + + +E  A +  A+L   +A K  V+RDG+ S+ +A  LVPGDII I+ G+ VPAD RL+
Sbjct:   35 REGLTSDEGQTRLEIFGPNKLEEKKENKVLKFLGFMWNPLSWVMELAAIMAIALANGGGRPPDWQDFVGITVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIISIKLGDIVPADGRLL 174          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA8_ARATH (ATPase 8, plasma membrane-type OS=Arabidopsis thaliana GN=AHA8 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 56/140 (40.00%), Postives = 89/140 (63.57%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            K+G+SS E  +R + +G N++  + EN F+KFLGF   P+ +VME A ++A  L        DW DF  I+ +L++N+ + + +E  A +  A+L  ++A K  V+RDG+  + +A  LVPGD+I I+ G+ VPADARL+
Sbjct:   33 KEGLSSDEGAKRLEIFGANKLEEKSENKFLKFLGFMWNPLSWVMESAAIMAIVLANGGGKAPDWQDFIGIMVLLIINSTISFIEENNAGNAAAALMANLAPKTKVLRDGKWGEQEASILVPGDLISIKLGDIVPADARLL 172          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_DUNAC (Plasma membrane ATPase OS=Dunaliella acidophila GN=DHA1 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.773e-22
Identity = 56/161 (34.78%), Postives = 94/161 (58.39%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDYDAPEDFATYKELREQHALNPEEDPA 804
            + G+S  E E R K++G N++     N  + + G+   P+ + ME A ++A  L D  DF +I+G+L++NA + + +E  A   + +L   +A KA  +R+G    I A +LVPGD+I+I  G  VPAD +L+ ++ A +D+ T  ++ +Q AL  E  PA
Sbjct:   53 EHGLSGAEAEARLKQHGPNKLPDNSRNPVLVYFGYMWNPLAWAMEAAAIIAIALVDGADFALIVGLLIINATISFVEESNADKAIKALSAALAPKAMALRNGAMVTIDAVDLVPGDVILIRIGNVVPADVKLLPEHGA-DDYETPVQI-DQAALTGESLPA 211          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA3_ARATH (ATPase 3, plasma membrane-type OS=Arabidopsis thaliana GN=AHA3 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.496e-21
Identity = 54/140 (38.57%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+S  E E R + +G N++  +KE+  +KFLGF   P+ +VME A ++A  L        DW DF  I+ +L++N+ + + +E  A +  A+L   +A K  V+RDG+ S+ +A  LVPGDI+ I+ G+ +PADARL+
Sbjct:   31 REGLSGAEGENRLQIFGPNKLEEKKESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIVCLLVINSTISFVEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEASILVPGDIVSIKLGDIIPADARLL 170          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_NICPL (Plasma membrane ATPase 1 OS=Nicotiana plumbaginifolia GN=PMA1 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.496e-21
Identity = 53/140 (37.86%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            K+G+++   ++R   +G+N++  +K++  +KFLGF   P+ +VME A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A KA V+RDG+  +  A  LVPGDII I+ G+ +PADARL+
Sbjct:   35 KEGLTATAAQERLAIFGYNKLEEKKDSKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWKEEDAAVLVPGDIISIKLGDIIPADARLL 174          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_ARATH (ATPase 1, plasma membrane-type OS=Arabidopsis thaliana GN=AHA1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.954e-21
Identity = 55/140 (39.29%), Postives = 88/140 (62.86%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+++ E E R   +G N++  +KE+  +KFLGF   P+ +VME A L+A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A K  V+RDG+ S+ +A  LVPGDI+ I+ G+ +PADARL+
Sbjct:   30 REGLTTQEGEDRIVIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAALMAIALANGDNRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLL 169          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA6_ARATH (ATPase 6, plasma membrane-type OS=Arabidopsis thaliana GN=AHA6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.553e-21
Identity = 55/140 (39.29%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+SS E   R + +G N++  + EN F+KFLGF   P+ +VME A ++A  L        DW DF  I  +L++N+ + + +E  A +  A+L  ++A K  V+RDG+  + +A  LVPGD+I I+ G+ VPADARL+
Sbjct:   33 REGLSSEEGRNRLQIFGANKLEEKVENKFLKFLGFMWNPLSWVMEAAAIMAIVLANGGGRPPDWQDFVGITCLLIINSTISFIEENNAGNAAAALMANLAPKTKVLRDGRWGEQEAAILVPGDLISIKLGDIVPADARLL 172          
The following BLAST results are available for this feature:
BLAST of FC878222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PMA3_NICPL3.015e-2239.29Plasma membrane ATPase 3 OS=Nicotiana plumbaginifo... [more]
PMA11_ARATH5.143e-2239.29ATPase 11, plasma membrane-type OS=Arabidopsis tha... [more]
PMA2_ARATH6.717e-2238.57ATPase 2, plasma membrane-type OS=Arabidopsis thal... [more]
PMA9_ARATH8.773e-2240.00ATPase 9, plasma membrane-type OS=Arabidopsis thal... [more]
PMA8_ARATH8.773e-2240.00ATPase 8, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_DUNAC8.773e-2234.78Plasma membrane ATPase OS=Dunaliella acidophila GN... [more]
PMA3_ARATH1.496e-2138.57ATPase 3, plasma membrane-type OS=Arabidopsis thal... [more]
PMA1_NICPL1.496e-2137.86Plasma membrane ATPase 1 OS=Nicotiana plumbaginifo... [more]
PMA1_ARATH1.954e-2139.29ATPase 1, plasma membrane-type OS=Arabidopsis thal... [more]
PMA6_ARATH2.553e-2139.29ATPase 6, plasma membrane-type OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878222 ID=FC878222; Name=FC878222; organism=Citrus clementina; type=EST; length=862bp
TCGCTATCTAAGATGGCTGCTCCTCGCGTTAGCTTCGGCGAAAAGGATAT
GGAGAACGGTGGTGATGACGCGGCCGAAAGGTCTCGCAAGTGGTCGCAGG
CTCCTGGCAACATCGAGGACCTCGACGAGTACACTGCTCTGCAGAAGTAC
ATCTCTACCTACAGAGACCCCAAGGCCCACGCCGCCGAGGATGCTGAGGC
CAACGCTGCCGATGCTGGCAAGGGCAAGGCCTGGTGGCAGTTCTGGCGCT
CCGGCAACTCTGGTGCTGCCACTGGTGCCGACCCTGGATTCGTCCCCGAT
GAGATGCTCGAGGCCGATATCAAGCAGGGTATCTCCTCTCACGAGGTTGA
GCAGCGCCGCAAGCGCTACGGTTGGAACGAAATCACCACCGAGAAGGAGA
ACTTGTTCATCAAGTTCCTCGGTTTCTTCACTGGTCCTGTCCTCTATGTT
ATGGAACTCGCTGTCCTCCTCGCCGCCGGTCTTCGTGACTGGATCGACTT
TGGTGTGATTATTGGTATTCTTCTTCTCAACGCCGTCGTCGGTTGGTACC
AGGAAAAGCAGGCTGCCGATGTCGTCGCTTCTCTCAAGGGTGACATCGCC
ATGAAGGCGACTGTCGTCCGTGATGGCCAGGAATCCGACATCAAGGCTCG
CGAGCTCGTCCCCGGTGACATTATCATCATCGAGGAGGGTGAGTCCGTTC
CTGCCGATGCCCGTCTTATCTGCGACTACGATGCTCCCGAGGACTTCGCT
ACCTACAAGGAGCTCCGCGAACAGCACGCTCTCAACCCTGAGGAGGACCC
CGCCGGTTCTGAGGACGCTGAGGACGATNGGTGAGGGTGTTGCCCACCAG
GGTCACTCCATC
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