FC878222

Overview
NameFC878222
Unique NameFC878222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5701 contig Ccv1_Contig5701:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA4_NICPL (Plasma membrane ATPase 4 OS=Nicotiana plumbaginifolia GN=PMA4 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 53/140 (37.86%), Postives = 87/140 (62.14%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+S+ E   R + +G N++  + E+  +KFLGF   P+ +VME A ++A  L        DW DF  II +L++N+ + + +E  A +  A+L   +A K  V+RDG+ S+ +A  LVPGDII ++ G+ +PADARL+
Sbjct:   33 REGLSADEGASRLQIFGPNKLEEKNESKILKFLGFMWNPLSWVMEAAAVMAIALANGDGKPPDWQDFIGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISVKLGDIIPADARLL 172          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATA1_SYNY3 (Cation-transporting ATPase pma1 OS=Synechocystis sp. (strain PCC 6803) GN=pma1 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 8.212e-20
Identity = 61/170 (35.88%), Postives = 99/170 (58.24%), Query Frame = 1
Query:  307 LEADIKQGISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL--ICDYDAPEDFATYKELREQHA--LNPEEDP 801
            L  D   G+++  V QR ++YG NE+  +  +  +++FL  F  P+LY++ +A  + A L  W +  VI G+ L+NA++G+ QE +A   +ASL   +  +ATV+RDGQ   I +++LV GDI+ +  G+ VPAD RL  + +    E   T + +  + A  L PEE P
Sbjct:   23 LHTDPGLGLTAEAVAQRYEQYGRNELKFKPGKPAWLRFLLQFHQPLLYILLIAGTVKAFLGSWTNAWVIWGVTLVNAIIGYIQEAKAEGAIASLAKAVTTEATVLRDGQNLRIPSQDLVIGDIVSLASGDKVPADLRLLKVRNLQVDESALTGEAVPVEKAVELLPEETP 192          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMA1_DICDI (Probable plasma membrane ATPase OS=Dictyostelium discoideum GN=patB PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 4.075e-19
Identity = 45/131 (34.35%), Postives = 80/131 (61.07%), Query Frame = 1
Query:  328 GISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            G++  E ++R +  G N I   K    ++FL F   P+ + ME+A +++  L DW+DF +I  +LLLNA +G+ +E  A + V +LK  +  +   +RDG+   + + +LVPGD+++++ G  +PAD R+I
Sbjct:  183 GLTKAEAQKRLEEVGPNAIPDVKRYPILEFLYFMWNPLSWTMEVAAIVSIALLDWVDFILICALLLLNATIGFIEENTAGNAVEALKNSLVSQIRCMRDGEWVMLPSPDLVPGDVVMLKIGAIIPADCRVI 313          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATXB_LEIDO (Probable proton ATPase 1B OS=Leishmania donovani GN=H1B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 44/131 (33.59%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  325 QGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            +G+++ E E+  K+YG NE+  +K   ++ ++    GP+   + +A+++   L +W D  ++  I + NA +GWY+  +A D VA+LK  +   ATV RD +   I A  LVPGD++ +  G +VPAD  +
Sbjct:   60 KGLTTEEAEELLKKYGRNELPEKKTPSWLIYVRGLWGPMPAALWIAIIIEFALENWPDGAILFAIQIANATIGWYETIKAGDAVAALKNSLKPTATVYRDSKWQQIDAAVLVPGDLVKLASGSAVPADCSI 190          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATXA_LEIDO (Probable proton ATPase 1A OS=Leishmania donovani GN=H1A PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 44/131 (33.59%), Postives = 77/131 (58.78%), Query Frame = 1
Query:  325 QGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            +G+++ E E+  K+YG NE+  +K   ++ ++    GP+   + +A+++   L +W D  ++  I + NA +GWY+  +A D VA+LK  +   ATV RD +   I A  LVPGD++ +  G +VPAD  +
Sbjct:   60 KGLTTEEAEELLKKYGRNELPEKKTPSWLIYVRGLWGPMPAALWIAIIIEFALENWPDGAILFAIQIANATIGWYETIKAGDAVAALKNSLKPTATVYRDSKWQQIDAAVLVPGDLVKLASGSAVPADCSI 190          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC_TRYBB (Probable calcium-transporting ATPase OS=Trypanosoma brucei brucei GN=TBA1 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.642e-18
Identity = 53/146 (36.30%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  307 LEADIKQGISSHEVEQRRKRYGWNEITTEKENLFIKF-LGFFTGPVLYVMELAVLLAAGLR-------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            L  D K G+SS+EVE+RR+ +G NE+ +E    F K  L  F   ++ ++ LA  ++  +        D+++  +I+ IL+LNA VG +QE +A   + +LK  +   A V+RDG    + A ELVPGD++ +  G  VPAD R++
Sbjct:   22 LRVDTKVGLSSNEVEERRQAFGINELPSEPPTPFWKLVLAQFEDTLVRILLLAATVSFAMAVVENNAADFVEPFIILLILILNATVGVWQENRAEGAIEALKSFVPKTAVVLRDGDIKTVNAEELVPGDVVEVAVGNRVPADMRVV 167          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.090e-15
Identity = 53/151 (35.10%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  310 EADIKQGISSHEVEQRRKRYGWNEITTEK------------ENLFIKFL--GFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQ-ESDIKARELVPGDIIIIEEGESVPADARL 717
            +  +++G+S++EV++RR+RYG NE+  EK            ++  +K L    F   VL  +       +G   +++  VI+ IL+LNA+VG +QE  A   + +LK      A V+RDG    D  A+ELVPGDI+ +  G+ VPAD R+
Sbjct:   21 QVKLEKGLSTYEVDKRRERYGLNELEKEKGKPLWRLVLEQFDDTLVKILLGAAFISFVLAYVNQDETGESGFEAYVEPLVILWILVLNAIVGVWQESNAEKALEALKEMQGESAKVLRDGYLVPDFPAKELVPGDIVELRVGDKVPADMRV 171          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: PMAX_ARATH (Putative ATPase, plasma membrane-like OS=Arabidopsis thaliana GN=At4g11730 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.772e-14
Identity = 44/137 (32.12%), Postives = 85/137 (62.04%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGI---LLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+S  E ++R K +G N++  +K E++ ++F      P+ +V++ A ++A    +     + +GI   L++N ++ + +E  AA+VVA  +  ++ K  V+RDG+ S+ +A  LVPGDI+ I+ G+ +P DARL+
Sbjct:   34 REGLSGAEGKERLKIFGPNKLENKKKEHITLRFFALMFKPLSWVIQAAAIMAMLFANGDGRQLFLGIVCLLIVNTIICYLKEDDAANVVAMARAGLSPKTKVLRDGKWSEQEASILVPGDIVSIKPGDIIPCDARLL 170          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATN5_YEAST (Sodium transport ATPase 5 OS=Saccharomyces cerevisiae GN=ENA5 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 46/158 (29.11%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  301 EMLEADIKQGISSHEVEQRRKRYGWNEITTE-KENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI--CDYDAPEDFATYKEL 765
            E +   + +G++  E  +R K  G N +  + K +     L      ++ V+ +++ ++  +RDWI  GVI  ++ +N ++G  QE +A   + SLK   +  A V+R+G+   I ++++VPGDI +++ G+++PAD RLI   ++D  E   T + L
Sbjct:   27 EFIGTSLTEGLTQDESLRRLKAVGENTLGDDTKIDYKAMVLHQVCNAMIMVLVISMAISFAVRDWITGGVISFVIAVNVLIGLVQEYKATKTMNSLKNLSSPNAHVIRNGKSETINSKDVVPGDICLVKVGDTIPADLRLIETKNFDTDESLLTGESL 184          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATN2_YEAST (Sodium transport ATPase 2 OS=Saccharomyces cerevisiae GN=ENA2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 46/158 (29.11%), Postives = 88/158 (55.70%), Query Frame = 1
Query:  301 EMLEADIKQGISSHEVEQRRKRYGWNEITTE-KENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI--CDYDAPEDFATYKEL 765
            E +   + +G++  E  +R K  G N +  + K +     L      ++ V+ +++ ++  +RDWI  GVI  ++ +N ++G  QE +A   + SLK   +  A V+R+G+   I ++++VPGDI +++ G+++PAD RLI   ++D  E   T + L
Sbjct:   27 EFIGTSLTEGLTQDESLRRLKAVGENTLGDDTKIDYKAMVLHQVCNAMIMVLVISMAISFAVRDWITGGVISFVIAVNVLIGLVQEYKATKTMNSLKNLSSPNAHVIRNGKSETINSKDVVPGDICLVKVGDTIPADLRLIETKNFDTDESLLTGESL 184          
The following BLAST results are available for this feature:
BLAST of FC878222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
PMA4_NICPL2.161e-2037.86Plasma membrane ATPase 4 OS=Nicotiana plumbaginifo... [more]
ATA1_SYNY38.212e-2035.88Cation-transporting ATPase pma1 OS=Synechocystis s... [more]
PMA1_DICDI4.075e-1934.35Probable plasma membrane ATPase OS=Dictyostelium d... [more]
ATXB_LEIDO9.079e-1933.59Probable proton ATPase 1B OS=Leishmania donovani G... [more]
ATXA_LEIDO9.079e-1933.59Probable proton ATPase 1A OS=Leishmania donovani G... [more]
ATC_TRYBB2.642e-1836.30Probable calcium-transporting ATPase OS=Trypanosom... [more]
ECAP_SOLLC6.090e-1535.10Calcium-transporting ATPase, endoplasmic reticulum... [more]
PMAX_ARATH1.772e-1432.12Putative ATPase, plasma membrane-like OS=Arabidops... [more]
ATN5_YEAST2.314e-1429.11Sodium transport ATPase 5 OS=Saccharomyces cerevis... [more]
ATN2_YEAST2.314e-1429.11Sodium transport ATPase 2 OS=Saccharomyces cerevis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionIC0AAA55AC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878222 ID=FC878222; Name=FC878222; organism=Citrus clementina; type=EST; length=862bp
TCGCTATCTAAGATGGCTGCTCCTCGCGTTAGCTTCGGCGAAAAGGATAT
GGAGAACGGTGGTGATGACGCGGCCGAAAGGTCTCGCAAGTGGTCGCAGG
CTCCTGGCAACATCGAGGACCTCGACGAGTACACTGCTCTGCAGAAGTAC
ATCTCTACCTACAGAGACCCCAAGGCCCACGCCGCCGAGGATGCTGAGGC
CAACGCTGCCGATGCTGGCAAGGGCAAGGCCTGGTGGCAGTTCTGGCGCT
CCGGCAACTCTGGTGCTGCCACTGGTGCCGACCCTGGATTCGTCCCCGAT
GAGATGCTCGAGGCCGATATCAAGCAGGGTATCTCCTCTCACGAGGTTGA
GCAGCGCCGCAAGCGCTACGGTTGGAACGAAATCACCACCGAGAAGGAGA
ACTTGTTCATCAAGTTCCTCGGTTTCTTCACTGGTCCTGTCCTCTATGTT
ATGGAACTCGCTGTCCTCCTCGCCGCCGGTCTTCGTGACTGGATCGACTT
TGGTGTGATTATTGGTATTCTTCTTCTCAACGCCGTCGTCGGTTGGTACC
AGGAAAAGCAGGCTGCCGATGTCGTCGCTTCTCTCAAGGGTGACATCGCC
ATGAAGGCGACTGTCGTCCGTGATGGCCAGGAATCCGACATCAAGGCTCG
CGAGCTCGTCCCCGGTGACATTATCATCATCGAGGAGGGTGAGTCCGTTC
CTGCCGATGCCCGTCTTATCTGCGACTACGATGCTCCCGAGGACTTCGCT
ACCTACAAGGAGCTCCGCGAACAGCACGCTCTCAACCCTGAGGAGGACCC
CGCCGGTTCTGAGGACGCTGAGGACGATNGGTGAGGGTGTTGCCCACCAG
GGTCACTCCATC
back to top