FC878222

Overview
NameFC878222
Unique NameFC878222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5701 contig Ccv1_Contig5701:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATCL_BACSU (Calcium-transporting ATPase OS=Bacillus subtilis GN=yloB PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.314e-14
Identity = 42/141 (29.79%), Postives = 81/141 (57.45%), Query Frame = 1
Query:  301 EMLEADIKQGISSHEVEQRRKRYGWNEITT-EKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            E     +KQG++  EV++R  ++G NE+   +K +  + F   F   ++ V+  A L++  L +++D   II I+ +N ++G++QE++A   + +LK         +R+G  + I ++ELVPGDI+    G+ + AD R++
Sbjct:   13 EATNTSMKQGLTEKEVKKRLDKHGPNELQEGKKTSALLLFFAQFKDFMVLVLLAATLISGFLGEYVDAVAIIAIVFVNGILGFFQERRAEQSLQALKELSTPHVMALREGSWTKIPSKELVPGDIVKFTSGDRIGADVRIV 153          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATN1_YEAST (Sodium transport ATPase 1 OS=Saccharomyces cerevisiae GN=ENA1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.022e-14
Identity = 45/158 (28.48%), Postives = 87/158 (55.06%), Query Frame = 1
Query:  301 EMLEADIKQGISSHEVEQRRKRYGWNEITTE-KENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI--CDYDAPEDFATYKEL 765
            E +   + +G++  E   R K  G N +  + K +     L      ++ V+ ++++++  + DWI  GVI  ++ +N ++G  QE +A   + SLK   +  A V+R+G+   I ++++VPGDI +++ G+++PAD RLI   ++D  E   T + L
Sbjct:   27 EFIGTSLTEGLTQDEFVHRLKTVGENTLGDDTKIDYKAMVLHQVCNAMIMVLLISMIISFAMHDWITGGVISFVIAVNVLIGLVQEYKATKTMNSLKNLSSPNAHVIRNGKSETINSKDVVPGDICLVKVGDTIPADLRLIETKNFDTDESLLTGESL 184          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATCL_SYNE7 (Probable calcium-transporting ATPase OS=Synechococcus elongatus (strain PCC 7942) GN=pacL PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 3.947e-14
Identity = 48/139 (34.53%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITTEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFG------VIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            + G+++     R   YG NE+  +     ++ L      ++ +M LAV + +G  D  D         I+ I++LNAV+G+ QE +A   +A+LKG  A    V RD ++ +I    LVPGD+I++E G+ VPADARL+
Sbjct:   36 RNGLTAEVAADRLALYGPNELVEQAGRSPLQILWDQFANIMLLMLLAVAVVSGALDLRDGQFPKDAIAILVIVVLNAVLGYLQESRAEKALAALKGMAAPLVRVRRDNRDQEIPVAGLVPGDLILLEAGDQVPADARLV 174          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C1_RAT (Calcium-transporting ATPase type 2C member 1 OS=Rattus norvegicus GN=Atp2c1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.155e-14
Identity = 43/139 (30.94%), Postives = 78/139 (56.12%), Query Frame = 1
Query:  304 MLEADIKQGISSHEVEQRRKRYGWNEIT-TEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            +L+AD++ G++  EV  RR  +GWNE   +E E L+ K++  F  P++ ++  + +++  +R + D   I   +L+   V + QE ++   +  L   +  +   VR+G+     AR+LVPGD + +  G+ VPAD RL
Sbjct:   37 LLQADLQNGLNKSEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISVLMRQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRL 175          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC3_SCHPO (Calcium-transporting ATPase 3 OS=Schizosaccharomyces pombe GN=cta3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.794e-14
Identity = 50/160 (31.25%), Postives = 83/160 (51.88%), Query Frame = 1
Query:  319 IKQGISSHEVEQRRKRYGWNEITTEKE-NLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI--CDYDAPEDFATYKEL---REQHA 780
            I  G++  E + R   YG N +  +   + +   L      +  V+ LA  L+ G  DWI+ GVI  I++LN  VG+ QE +A   + SL+   +  A V R  +   I +  LVPGD+++++ G+ VPAD RL+   +++  E   T + L   ++ HA
Sbjct:   26 IPNGLTHEEAQNRLSEYGENRLEADSGVSAWKVLLRQVLNAMCVVLILAAALSFGTTDWIEGGVISAIIVLNITVGFIQEYKAEKTMDSLRTLASPMAHVTRSSKTDAIDSHLLVPGDVVVLKTGDVVPADLRLVETVNFETDEALLTGESLPVIKDAHA 185          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ECA2_ARATH (Calcium-transporting ATPase 2, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 53/151 (35.10%), Postives = 82/151 (54.30%), Query Frame = 1
Query:  319 IKQGISSHEVEQRRKRYGWNEITTEK------------ENLFIKFLGFFTGPVLYVMELAVL-----LAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQE-SDIKARELVPGDIIIIEEGESVPADARL 717
            + +G++S +V+ RR++YG+NE+  EK            ++  +K L    G       LA L       +G   +++  VI+ IL+LNAVVG +QE  A   + +LK      A V+RDG    ++ ARELVPGDI+ +  G+ VPAD R+
Sbjct:   25 LDKGLTSEDVQIRRQKYGFNELAKEKGKPLWHLVLEQFDDTLVKIL---LGAAFISFVLAFLGEEHGSGSGFEAFVEPFVIVLILILNAVVGVWQESNAEKALEALKEMQCESAKVLRDGNVLPNLPARELVPGDIVELNVGDKVPADMRV 172          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C1_MOUSE (Calcium-transporting ATPase type 2C member 1 OS=Mus musculus GN=Atp2c1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.148e-13
Identity = 44/148 (29.73%), Postives = 80/148 (54.05%), Query Frame = 1
Query:  304 MLEADIKQGISSHEVEQRRKRYGWNEIT-TEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDYDAPED 744
            +L+AD++ G++  EV  RR  +GWNE   +E E L+ K++  F  P++ ++  + +++  +R + D   I   +++   V + QE ++   +  L   +  +   VR+G+     AR+LVPGD + +  G+ VPAD RL    D   D
Sbjct:   37 LLQADLQNGLNKSEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISILMRQFDDAVSITVAIVIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSVD 184          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ECA1_ARATH (Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.500e-13
Identity = 50/148 (33.78%), Postives = 86/148 (58.11%), Query Frame = 1
Query:  322 KQGISSHEVEQRRKRYGWNEITT-EKENLFIKFLGFFTGPVLYVMELAVLLA-------------AGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQE-SDIKARELVPGDIIIIEEGESVPADARLI 720
            ++G+SS EV +R + YG NE+   E  ++F   L  F   ++ ++  A +++              G+  +++  VI  IL++NA+VG +QE  A   + +LK   + +ATV+RDG + S + A+ELVPGDI+ +  G+ VPAD R++
Sbjct:   43 EKGLSSDEVLKRHQIYGLNELEKPEGTSIFKLILEQFNDTLVRILLAAAVISFVLAFFDGDEGGEMGITAFVEPLVIFLILIVNAIVGIWQETNAEKALEALKEIQSQQATVMRDGTKVSSLPAKELVPGDIVELRVGDKVPADMRVV 190          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ECA4_ARATH (Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.559e-13
Identity = 50/156 (32.05%), Postives = 88/156 (56.41%), Query Frame = 1
Query:  298 DEMLEADIKQGISSHEVEQRRKRYGWNEITT-EKENLFIKFLGFFTGPVLYVMELAVLLA-------------AGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQE-SDIKARELVPGDIIIIEEGESVPADARLI 720
            +E      ++G+S+ EV +R + YG NE+   E  ++F   L  F   ++ ++  A +++              G+  +++  VI  IL++NA+VG +QE  A   + +LK   + +ATV+RDG + S + A+ELVPGDI+ +  G+ VPAD R++
Sbjct:   35 EEKFGVSREKGLSTDEVLKRHQIYGLNELEKPEGTSIFKLILEQFNDTLVRILLAAAVISFVLAFFDGDEGGEMGITAFVEPLVIFLILIVNAIVGIWQETNAEKALEALKEIQSQQATVMRDGTKVSSLPAKELVPGDIVELRVGDKVPADMRVV 190          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC_PLAFK (Calcium-transporting ATPase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=ATP6 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  301 EMLEADIKQGISSHEVEQRRKRYGWNEITTEKE-NLFIKFLGFFTGPVLYVMELAVLLAAGLR------------DWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDY 729
            + L+ +   G+ + E++ RR +YG NE+  EK+ ++F   L  F   ++ ++ LA  ++  L             D+I+  VI+ IL+LNA VG +QE  A   + +LK     KA V+RDG+   I ++ L  GDII +  G   PADAR+I  Y
Sbjct:   18 KFLDVNKDNGLKNEELDDRRLKYGLNELEVEKKKSIFELILNQFDDLLVKILLLAAFISFVLTLLDMKHKKIEICDFIEPLVIVLILILNAAVGVWQECNAEKSLEALKELQPTKAKVLRDGKWEIIDSKYLYVGDIIELSVGNKTPADARIIKIY 173          
The following BLAST results are available for this feature:
BLAST of FC878222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
ATCL_BACSU2.314e-1429.79Calcium-transporting ATPase OS=Bacillus subtilis G... [more]
ATN1_YEAST3.022e-1428.48Sodium transport ATPase 1 OS=Saccharomyces cerevis... [more]
ATCL_SYNE73.947e-1434.53Probable calcium-transporting ATPase OS=Synechococ... [more]
AT2C1_RAT5.155e-1430.94Calcium-transporting ATPase type 2C member 1 OS=Ra... [more]
ATC3_SCHPO8.794e-1431.25Calcium-transporting ATPase 3 OS=Schizosaccharomyc... [more]
ECA2_ARATH1.148e-1335.10Calcium-transporting ATPase 2, endoplasmic reticul... [more]
AT2C1_MOUSE1.148e-1329.73Calcium-transporting ATPase type 2C member 1 OS=Mu... [more]
ECA1_ARATH1.500e-1333.78Calcium-transporting ATPase 1, endoplasmic reticul... [more]
ECA4_ARATH2.559e-1332.05Calcium-transporting ATPase 4, endoplasmic reticul... [more]
ATC_PLAFK4.364e-1333.97Calcium-transporting ATPase OS=Plasmodium falcipar... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878222 ID=FC878222; Name=FC878222; organism=Citrus clementina; type=EST; length=862bp
TCGCTATCTAAGATGGCTGCTCCTCGCGTTAGCTTCGGCGAAAAGGATAT
GGAGAACGGTGGTGATGACGCGGCCGAAAGGTCTCGCAAGTGGTCGCAGG
CTCCTGGCAACATCGAGGACCTCGACGAGTACACTGCTCTGCAGAAGTAC
ATCTCTACCTACAGAGACCCCAAGGCCCACGCCGCCGAGGATGCTGAGGC
CAACGCTGCCGATGCTGGCAAGGGCAAGGCCTGGTGGCAGTTCTGGCGCT
CCGGCAACTCTGGTGCTGCCACTGGTGCCGACCCTGGATTCGTCCCCGAT
GAGATGCTCGAGGCCGATATCAAGCAGGGTATCTCCTCTCACGAGGTTGA
GCAGCGCCGCAAGCGCTACGGTTGGAACGAAATCACCACCGAGAAGGAGA
ACTTGTTCATCAAGTTCCTCGGTTTCTTCACTGGTCCTGTCCTCTATGTT
ATGGAACTCGCTGTCCTCCTCGCCGCCGGTCTTCGTGACTGGATCGACTT
TGGTGTGATTATTGGTATTCTTCTTCTCAACGCCGTCGTCGGTTGGTACC
AGGAAAAGCAGGCTGCCGATGTCGTCGCTTCTCTCAAGGGTGACATCGCC
ATGAAGGCGACTGTCGTCCGTGATGGCCAGGAATCCGACATCAAGGCTCG
CGAGCTCGTCCCCGGTGACATTATCATCATCGAGGAGGGTGAGTCCGTTC
CTGCCGATGCCCGTCTTATCTGCGACTACGATGCTCCCGAGGACTTCGCT
ACCTACAAGGAGCTCCGCGAACAGCACGCTCTCAACCCTGAGGAGGACCC
CGCCGGTTCTGAGGACGCTGAGGACGATNGGTGAGGGTGTTGCCCACCAG
GGTCACTCCATC
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