FC878222

Overview
NameFC878222
Unique NameFC878222
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
IVIA1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5701 contig Ccv1_Contig5701:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C1_PONAB (Calcium-transporting ATPase type 2C member 1 OS=Pongo abelii GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 42/139 (30.22%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  304 MLEADIKQGISSHEVEQRRKRYGWNEIT-TEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            +L+AD++ G++  EV  RR  +GWNE   +E E L+ K++  F  P++ ++  + +++  +  + D   I   +L+   V + QE ++   +  L   +  +   VR+G+     AR+LVPGD + +  G+ VPAD RL
Sbjct:   37 ILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRL 175          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C1_HUMAN (Calcium-transporting ATPase type 2C member 1 OS=Homo sapiens GN=ATP2C1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 4.364e-13
Identity = 42/139 (30.22%), Postives = 77/139 (55.40%), Query Frame = 1
Query:  304 MLEADIKQGISSHEVEQRRKRYGWNEIT-TEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            +L+AD++ G++  EV  RR  +GWNE   +E E L+ K++  F  P++ ++  + +++  +  + D   I   +L+   V + QE ++   +  L   +  +   VR+G+     AR+LVPGD + +  G+ VPAD RL
Sbjct:   37 ILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLVPPECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRL 175          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C1_BOVIN (Calcium-transporting ATPase type 2C member 1 OS=Bos taurus GN=ATP2C1 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.700e-13
Identity = 44/148 (29.73%), Postives = 79/148 (53.38%), Query Frame = 1
Query:  304 MLEADIKQGISSHEVEQRRKRYGWNEIT-TEKENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDYDAPED 744
            +L+AD++ G++  EV  RR  +GWNE   +E E L+ K++  F  P++ ++  + +++  +  + D   I   +L+   V + QE ++   +  L   +  +   VR+G+     AR+LVPGD + +  G+ VPAD RL    D   D
Sbjct:   71 ILQADLQNGLNKCEVSHRRAFHGWNEFDISEDEPLWKKYISQFKNPLIMLLLASAVISVLMHQFDDAVSITVAILIVVTVAFVQEYRSEKSLEELSKLMPPECHCVREGKLEHTLARDLVPGDTVCLSVGDRVPADLRLFEAVDLSVD 218          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C2_MOUSE (Calcium-transporting ATPase type 2C member 2 OS=Mus musculus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.444e-13
Identity = 48/169 (28.40%), Postives = 87/169 (51.48%), Query Frame = 1
Query:  316 DIKQGISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLICDYDAPEDFATYKELREQHALNPEEDPAGSEDA 819
            D+  G+S   V QRR  +GWNE  T+  E ++ K+L  F  P++ ++  + +++   +++ D   I   +L+   VG+ QE ++   +  L   +  +   +RDG+   + AR+LVPGDI+ +  G+ +PAD RL    D          L ++ +   E +P G  D+
Sbjct:   70 DLDSGLSEFAVAQRRLVHGWNEFVTDNAEPVWKKYLDQFRNPLILLLLGSSVVSVLTKEYEDAVSIALAVLIVVTVGFIQEYRSEKSLEELTKLVPPECNCLRDGKLRHMLARDLVPGDIVSLSMGDRIPADIRLTEVTDL---------LVDESSFTGEVEPCGKTDS 229          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC1_ANOGA (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Anopheles gambiae GN=Ca-P60A PE=3 SV=5)

HSP 1 Score: 73.9442 bits (180), Expect = 1.270e-12
Identity = 50/159 (31.45%), Postives = 90/159 (56.60%), Query Frame = 1
Query:  298 DEMLE---ADIKQGISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLA---------AGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLICDY 729
            DE+L     D ++G+S  +V++ +K+YG NE+  E+ + L+   L  F   ++ ++ LA +++          G+  +++  VI+ IL+ NAVVG +QE+ A   + +LK        V+R  +     I+A+E+VPGD++ +  G+ +PAD RLI  Y
Sbjct:   10 DEVLSHFRVDPERGLSLDQVKEYQKKYGPNELPAEEGKTLWQLVLEQFDDLLVKILLLAAIISFVLALFEEHEGVEAFVEPFVILLILIANAVVGVWQERNAESAIEALKEYEPEMGKVIRGDKSGVQKIRAKEIVPGDVVEVSVGDKIPADIRLIKIY 168          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C2_RAT (Calcium-transporting ATPase type 2C member 2 OS=Rattus norvegicus GN=Atp2c2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.166e-12
Identity = 41/135 (30.37%), Postives = 76/135 (56.30%), Query Frame = 1
Query:  316 DIKQGISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            D+  G+S   V QRR  +GWNE  T+  E ++ K+L  F  P++ ++  + +++   +++ D   I   +L+   VG+ QE ++   +  L   +  +   +RDG+   + AR+LVPGD++ +  G+ +PAD RL
Sbjct:   70 DLDSGLSEFAVAQRRLVHGWNEFVTDNTEPVWKKYLDQFRNPLILLLLGSSVVSVLTKEYEDAISIALAVLIVVTVGFIQEYRSEKSLEELTKLVPPECNCLRDGKLRHMLARDLVPGDVVSLSMGDRIPADIRL 204          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC_ARTSF (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 50/151 (33.11%), Postives = 84/151 (55.63%), Query Frame = 1
Query:  316 DIKQGISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLL-------------AAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLI 720
            D ++G++  +V++ +++YG NE+  E+ ++L    L  F   ++ ++ LA ++             A  L  +++  VI+ IL+ NAVVG +QEK A   + +LK        V+R  +     IKAR+LVPGDI+ I  G+ +PAD RLI
Sbjct:   19 DPERGLALEQVKKNQEKYGPNELPAEEGKSLLTLILEQFDDLLVKILLLAAIISLVLALFEEHDDEAEQLTAYVEPFVILLILIANAVVGVWQEKNAESAIEALKEYEPEMGKVIRADKTGIQKIKARDLVPGDIVEISVGDKIPADLRLI 169          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2C2_HUMAN (Calcium-transporting ATPase type 2C member 2 OS=Homo sapiens GN=ATP2C2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 40/135 (29.63%), Postives = 74/135 (54.81%), Query Frame = 1
Query:  316 DIKQGISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARL 717
            D+  G+S   V QRR  +GWNE   +  E ++ K+L  F  P++ ++  + L++   +++ D   I   +L+   V + QE ++   +  L   +  +   +R+G+   + ARELVPGD++ +  G+ +PAD RL
Sbjct:   72 DLHTGLSEFSVTQRRLAHGWNEFVADNSEPVWKKYLDQFKNPLILLLLGSALVSVLTKEYEDAVSIATAVLVVVTVAFIQEYRSEKSLEELTKMVPPECNCLREGKLQHLLARELVPGDVVSLSIGDRIPADIRL 206          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: ATC1_YEAST (Calcium-transporting ATPase 1 OS=Saccharomyces cerevisiae GN=PMR1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12
Identity = 50/143 (34.97%), Postives = 77/143 (53.85%), Query Frame = 1
Query:  301 EMLEADIKQGI-SSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFGVIIGILLLNAV-VGWYQEKQAADVVASLKGDIAMKATVVRDGQESDIKARELVPGDIIIIEEGESVPADARLI 720
            E L+ D   G+ SS+E   RR  YG NEIT E  E+LF KFL  F    + ++ +   + +     ID  V I + +   V VG+ QE ++   + +L   +  +  ++R GQES + A  LVPGD++    G+ +PAD R+I
Sbjct:   48 EKLDTDKNGGLRSSNEANNRRSLYGPNEITVEDDESLFKKFLSNFIEDRMILLLIGSAVVSLFMGNIDDAVSITLAIFIVVTVGFVQEYRSEKSLEALNKLVPAECHLMRCGQESHVLASTLVPGDLVHFRIGDRIPADIRII 190          
BLAST of FC878222 vs. ExPASy Swiss-Prot
Match: AT2A3_MOUSE (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Mus musculus GN=Atp2a3 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.231e-12
Identity = 50/145 (34.48%), Postives = 82/145 (56.55%), Query Frame = 1
Query:  328 GISSHEVEQRRKRYGWNEITTEK-ENLFIKFLGFFTGPVLYVMELAVLLAAGLRDWIDFG-----------VIIGILLLNAVVGWYQEKQAADVVASLKGDIAMKATVVRDGQES--DIKARELVPGDIIIIEEGESVPADARLI 720
            G+S  +V   R+RYG NE+ TE+ ++L+   +  F   ++ ++ LA L++  L  W + G           VI+ IL+ NA+VG +QE+ A   + +LK        V+R  ++    I+AR++VPGDI+ +  G+ VPAD RLI
Sbjct:   23 GLSLEQVTDARERYGPNELPTEEGKSLWELVVEQFEDLLVRILLLAALVSFVLA-WFEEGEETTTAFVEPLVIMLILVANAIVGVWQERNAESAIEALKEYEPEMGKVIRSDRKGVQRIRARDIVPGDIVEVAVGDKVPADLRLI 166          
The following BLAST results are available for this feature:
BLAST of FC878222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
AT2C1_PONAB4.364e-1330.22Calcium-transporting ATPase type 2C member 1 OS=Po... [more]
AT2C1_HUMAN4.364e-1330.22Calcium-transporting ATPase type 2C member 1 OS=Ho... [more]
AT2C1_BOVIN5.700e-1329.73Calcium-transporting ATPase type 2C member 1 OS=Bo... [more]
AT2C2_MOUSE7.444e-1328.40Calcium-transporting ATPase type 2C member 2 OS=Mu... [more]
ATC1_ANOGA1.270e-1231.45Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
AT2C2_RAT2.166e-1230.37Calcium-transporting ATPase type 2C member 2 OS=Ra... [more]
ATC_ARTSF2.829e-1233.11Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
AT2C2_HUMAN2.829e-1229.63Calcium-transporting ATPase type 2C member 2 OS=Ho... [more]
ATC1_YEAST8.231e-1234.97Calcium-transporting ATPase 1 OS=Saccharomyces cer... [more]
AT2A3_MOUSE8.231e-1234.48Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA55AC09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA55AC09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC878222 ID=FC878222; Name=FC878222; organism=Citrus clementina; type=EST; length=862bp
TCGCTATCTAAGATGGCTGCTCCTCGCGTTAGCTTCGGCGAAAAGGATAT
GGAGAACGGTGGTGATGACGCGGCCGAAAGGTCTCGCAAGTGGTCGCAGG
CTCCTGGCAACATCGAGGACCTCGACGAGTACACTGCTCTGCAGAAGTAC
ATCTCTACCTACAGAGACCCCAAGGCCCACGCCGCCGAGGATGCTGAGGC
CAACGCTGCCGATGCTGGCAAGGGCAAGGCCTGGTGGCAGTTCTGGCGCT
CCGGCAACTCTGGTGCTGCCACTGGTGCCGACCCTGGATTCGTCCCCGAT
GAGATGCTCGAGGCCGATATCAAGCAGGGTATCTCCTCTCACGAGGTTGA
GCAGCGCCGCAAGCGCTACGGTTGGAACGAAATCACCACCGAGAAGGAGA
ACTTGTTCATCAAGTTCCTCGGTTTCTTCACTGGTCCTGTCCTCTATGTT
ATGGAACTCGCTGTCCTCCTCGCCGCCGGTCTTCGTGACTGGATCGACTT
TGGTGTGATTATTGGTATTCTTCTTCTCAACGCCGTCGTCGGTTGGTACC
AGGAAAAGCAGGCTGCCGATGTCGTCGCTTCTCTCAAGGGTGACATCGCC
ATGAAGGCGACTGTCGTCCGTGATGGCCAGGAATCCGACATCAAGGCTCG
CGAGCTCGTCCCCGGTGACATTATCATCATCGAGGAGGGTGAGTCCGTTC
CTGCCGATGCCCGTCTTATCTGCGACTACGATGCTCCCGAGGACTTCGCT
ACCTACAAGGAGCTCCGCGAACAGCACGCTCTCAACCCTGAGGAGGACCC
CGCCGGTTCTGAGGACGCTGAGGACGATNGGTGAGGGTGTTGCCCACCAG
GGTCACTCCATC
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